BAC Information

Click to search

BAC

Clone NameB6Ng01-318H08
Chromosome5 (Build37)12 (Build37)
Map Location 82,121,179 - 82,122,34763,699,838 - 63,699,992
singlet/doubletsingletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318H08.bB6Ng01-318H08.g
ACCGA108341GA108342
length1,165451
definitionB6Ng01-318H08.b B6Ng01-318H08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,121,179 - 82,122,347)(63,699,838 - 63,699,992)
sequence
gaattcttagacaaatacaaacaattagtgtccttacttaaaaaaaattc
acagtaatataattaaaacacaataaaatatatacactgtgagtgtttac
tttaaatctgacggttaaatttacatttacagataaaacaaaacaggtag
aaaaacaagttggaaactaagtgttccctactacctctaccattgtgtta
cttactgctctttcttcgtctcctcctaaaggaagatctttattatcatt
ttgtttttagacttcatattgctggaatcacccaatatgaattattttct
gtgtagattaagtaatccaaaaagtcacgttgagattcagccacattttc
catttattaatattttgtgctgtattgacacctagtatattctattactg
tgatatatttattcttttatttgatttctttcaagatagaggctatgatc
aataaggattctgtaaaaagcctcatgcaaattgttttctttgtggtaaa
tgttcttacttatccaggaagggtcaatatgtccgcagctttataaaaag
tgtcaaagtgcttccaagtcactgcaaaattttgtattcccatcagtagg
gcacaaggatttgaactgcttcaagtccgtgtaaacattagtatcaagtg
ggtataaaatagtattgcaaatgtacttttaccatttgtttctttaattg
ctaatcattccaactatcttttgttatagaaaatggtttttgttttattt
tttctaaaattgtccattaatctctttggataattttaagtatcttctat
tactgtattgttaacaaacatgaatgttctgtaattccagactcccatat
tccctagtctgtggttcgtatatttgttttcttgatggtatattctaaaa
agttcaaaattttagctttgttgaagtttaattttccatttttatggcta
aggtttttgaagctatgtacataattttttctttagagtataaaggagat
ggtcttgtatttggttctagaacatatttggttctggattctggttctgt
gtgaggagcatcttgaattagttcaggaccgccagtgagacagggctcag
aattcagattcggtggttaggacttaattataggatctcaatcattcaca
cttcccctttcctca

atgccatacttgtatgtactcagaaaggaaagaaataggctgaatcccta
actcttggcatactacatttaatgatgtgtatttctggtttattagggta
tagatgaatctaagaggcttaaaaccttggcctggtagaactaatattta
tttatttatttatttatttatttatttatttttattggttattttattta
tttacatttcaaatgttatcccccttcccagtttcccctctgtaaactat
atatatatggaagcccaggaggagttttatatatgtgtatatatatatat
atatatatatatatatatatatacatatataaaaagatatatatatatat
atatatatatatatatatagaagggggctgagagggaaggttatatatat
atataaatatatatataaaaatatatatatacaaatatatatatatatat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82121179_82122347
seq2: B6Ng01-318H08.b_45_1209

seq1  GAATTCTTAGACAAATACAAACAATTAGTGTCCTTACTTAAAAAAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGACAAATACAAACAATTAGTGTCCTTACTTAAAAAAAATTC  50

seq1  ACAGTAATATAATTAAAACACAATAAAATATATACACTGTGAGTGTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATATAATTAAAACACAATAAAATATATACACTGTGAGTGTTTAC  100

seq1  TTTAAATCTGACGGTTAAATTTACATTTACAGATAAAACAAAACAGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTGACGGTTAAATTTACATTTACAGATAAAACAAAACAGGTAG  150

seq1  AAAAACAAGTTGGAAACTAAGTGTTCCCTACTACCTCTACCATTGTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGTTGGAAACTAAGTGTTCCCTACTACCTCTACCATTGTGTTA  200

seq1  CTTACTGCTCTTTCTTCGTCTCCTCCTAAAGGAAGATCTTTATTATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCTCTTTCTTCGTCTCCTCCTAAAGGAAGATCTTTATTATCATT  250

seq1  TTGTTTTTAGACTTCATATTGCTGGAATCACCCAATATGAATTATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAGACTTCATATTGCTGGAATCACCCAATATGAATTATTTTCT  300

seq1  GTGTAGATTAAGTAATCCAAAAAGTCACGTTGAGATTCAGCCACATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGATTAAGTAATCCAAAAAGTCACGTTGAGATTCAGCCACATTTTC  350

seq1  CATTTATTAATATTTTGTGCTGTATTGACACCTAGTATATTCTATTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTAATATTTTGTGCTGTATTGACACCTAGTATATTCTATTACTG  400

seq1  TGATATATTTATTCTTTTATTTGATTTCTTTCAAGATAGAGGCTATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATTTATTCTTTTATTTGATTTCTTTCAAGATAGAGGCTATGATC  450

seq1  AATAAGGATTCTGTAAAAAGCCTCATGCAAATTGTTTTCTTTGTGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGATTCTGTAAAAAGCCTCATGCAAATTGTTTTCTTTGTGGTAAA  500

seq1  TGTTCTTACTTATCCAGGAAGGGTCAATATGTCCGCAGCTTTATAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTACTTATCCAGGAAGGGTCAATATGTCCGCAGCTTTATAAAAAG  550

seq1  TGTCAAAGTGCTTCCAAGTCACTGCAAAATTTTGTATTCCCATCAGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGTGCTTCCAAGTCACTGCAAAATTTTGTATTCCCATCAGTAGG  600

seq1  GCACAAGGATTTGAACTGCTTCAAGTCCGTGTAAACATTAGTATCAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGATTTGAACTGCTTCAAGTCCGTGTAAACATTAGTATCAAGTG  650

seq1  GGTATAAAATAGTATTGCAAATGTACTTTTACCATTTGTTTCTTTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAAATAGTATTGCAAATGTACTTTTACCATTTGTTTCTTTAATTG  700

seq1  CTAATCATTCCAACTATCTTTTGTTATAGAAAATGGTTTTTGTTTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCATTCCAACTATCTTTTGTTATAGAAAATGGTTTTTGTTTTATTT  750

seq1  TTTCTAAAATTGTCCATTAATCTCTTTGGATAATTTTAAGTATCTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAATTGTCCATTAATCTCTTTGGATAATTTTAAGTATCTTCTAT  800

seq1  TACTGTATTGTTAACAAACATGAATGTTCTGTAATTCCAGACTCCCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATTGTTAACAAACATGAATGTTCTGTAATTCCAGACTCCCATAT  850

seq1  TCCCTAGTCTGTGGTTCGTATATTTGTTTTCTTGATGGTATATTCTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTCTGTGGTTCGTATATTTGTTTTCTTGATGGTATATTCTAAAA  900

seq1  AGTTCAAAATTTTAGCTTTGTTGAAGTTTAATTTTCCATTTTTATGGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAAATTTTAGCTTTGTTGAAGTTTAATTTTCCATTTTTATGGCTA  950

seq1  AGGTTTTTGAAGCTATGTACATAA-TTTTTCTTTAGAGTATAAA-GAGAT  998
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  AGGTTTTTGAAGCTATGTACATAATTTTTTCTTTAGAGTATAAAGGAGAT  1000

seq1  GGTCTTGTATTTGGTTCTAGAACATATTTGGTTCTGGATTCTGGTTCTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTATTTGGTTCTAGAACATATTTGGTTCTGGATTCTGGTTCTGT  1050

seq1  GTTGAGGAAGCATCTTGAATTTAGTTTCAAGGAC--GCAGTGAGACAGGG  1096
      | ||||| ||||||||||| ||||||   |||||   |||||||||||||
seq2  G-TGAGG-AGCATCTTGAA-TTAGTT--CAGGACCGCCAGTGAGACAGGG  1095

seq1  CTTCAG-ATTCAGATTCGGTGTTTAAAGAAATTATATATAGTGATCTCAA  1145
      | |||| |||||||||||||| ||  || | |||  ||||| ||||||||
seq2  C-TCAGAATTCAGATTCGGTGGTT--AGGACTTAATTATAG-GATCTCAA  1141

seq1  TCAAATTC-CACTT-CCCTTTCCTCA  1169
      ||  |||| ||||| |||||||||||
seq2  TC--ATTCACACTTCCCCTTTCCTCA  1165


seq1: chr12_63699838_63699992
seq2: B6Ng01-318H08.g_353_500 (reverse)

seq1  TATATATATATTTCCCCTTTGTAGTTTTATATATATATATATATATATAT  50
      |||||||||||             |||||||||||||| |||||||||||
seq2  TATATATATAT-------------TTTTATATATATATTTATATATATAT  37

seq1  ATA--------------------TATATATATATATGTGTGTGTGTGTAT  80
      |||                    | ||||||||||            |||
seq2  ATAACCTTCCCTCTCAGCCCCCTTCTATATATATA------------TAT  75

seq1  ATATATGTATATATATATATGTGTATATATATGTATATATATATATATAC  130
      |||||| ||||||||||||| | | |||||||||||||||||||||||  
seq2  ATATATATATATATATATATCTTTTTATATATGTATATATATATATAT--  123

seq1  ACACATATATATATATATATACACA  155
      | | |||||||||||||||||||||
seq2  ATATATATATATATATATATACACA  148


| Home | SequenceCutter | Blast | Download |