BAC Information

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BAC

Clone NameB6Ng01-319H02
Chromosome1 (Build37)12 (Build37)
Map Location 174,665,176 - 174,665,69137,557,943 - 37,559,052
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319H02.bB6Ng01-319H02.g
ACCGA109071GA109072
length1,0191,115
definitionB6Ng01-319H02.b B6Ng01-319H02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,665,176 - 174,665,691)(37,557,943 - 37,559,052)
sequence
gaattcctgatctttccagacttttataataaaggggtgatggatttttc
aaattctttctcagcatctaacgagatgaccatattatttttgtctttga
atttgtttatatagtggattacgttgatggatttctgtatattcaaccat
cctttcattccttggatgaagcctactcggtcatgatggatgatcgtttt
gatgtgttcttggattcagtttgcgaggattttattgaatattcttgcat
cgatattcataagggaaattggtctgaagttctctatctttgttgggtct
ttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttggg
tagagtaccttctacttctattttgtggaatagtttgagtagagttagaa
ttagttcttctttgaaggtctgatataactcttcactaaacccatctggt
cctgggctttttttggttgggagactattaatgactgcttctatttcttt
aggggagatgggactgttaagatcattaatctgatcctgatttaactttg
gtacttggtatctgtctaggaagttgtccatttcattcaggttttccagt
tttgttgagtatagccttttatagtaggatctgatgatgttttggatttc
ctcaggatctgctattatgtctcctttttcatttctgattttgttaatta
ggatactgcccctgtgccctctagttagtctggctaaggggtttatctat
cttgttggttttctcaaagaaccagctcctggtttggttgattttttgaa
tagttctttttgtttccacttggttgatttcagtcctaagtttgattatt
tgctgctgtctactcctcttgggtgaatttgcttcctttagttctagagc
ttctaggtgtgctgtcagactgctagtatatgctctctttagtttctttt
tggaggcactcaggctatgagttttcctcttaggactgctttcattgtgt
ccataagtttgggtatgtt
gaattccaaatgctgtcaaaaactcagactgaattagcaggaggtggaaa
agggaagtgaaaaagagcagacatacgaattcaccgacccggctttttat
cctacgtactcttgaggtcacatcggtggctttgctttcatgccaggagc
agtgcaagtcataattagaatatggaacactgcagaaaaaggggaacgga
ccccatctgtacagccacgctaactacaagtccagaacctgttttacagc
tgaggcacaaagactgcattaagacatgtggttagttctttctctataca
tactgtaggttcattgtgtctgtgtctcctcggtggagctaatgcagtca
tacaatattttgtcctctctttgctgctggagttcctttctcaccagatg
cagcaaaccctttcctaagccgctctgcctgtgctgctctgcacattgac
acccgtcagcttgcaagtgagcagggctgtcagcgctggatattttcccc
tccattgtcactggtctaatgacatcctctggtttatgtgcttttctccc
caacaccaccgtaagctagaataactcactcagtctgagtgttaggtacc
tctcctataattcatgccaactgaaggaaatccccacacttaaggacaaa
cggtgcagcatgtgtactgaatagggggcagtctccatgtgtaaatgttc
catttattgtaatgaaactatacatctcaccgtgcacgccactattttta
ttgcagataaagaaaaaaattagaaatgggatgtcccagtacaataggat
cattattccaaaactcacattggaattaaaggagaactgtgtagatttat
attgatctcaggttctaatttattatgggaagtttggtaattgattgtta
attatgactttaaacacaagtgttgactgaaatcatggtattaatggctc
tctttgggacttttttatttttagatagcattactttatccagactgggg
tatgaggttttgattacaaggtatgccaacatagcatgaaaataaaaaca
ctcagattttcacaattcattagcattaagcacatagtagaatgtcaaaa
atacattattttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174665176_174665691
seq2: B6Ng01-319H02.b_47_560 (reverse)

seq1  GTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC  50
      ||||||| || |||||||||||||||||||| ||||||||||||||||||
seq2  GTCCCATCTCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACC  50

seq1  AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTT  100
      ||||||||||||||||||||||||||||||| |||||| || ||||||||
seq2  AAAAAAAGCCCAGGACCAGATGGGTTTAGTGAAGAGTTATATCAGACCTT  100

seq1  CAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAG  150
      ||||||||| ||||||| || ||| | ||||||||| |||||||||||||
seq2  CAAAGAAGAACTAATTCTAACTCTACTCAAACTATTCCACAAAATAGAAG  150

seq1  TAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATA  200
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATA  200

seq1  CCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTC  250

seq1  TCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAA  300
       ||||||||||||||||||| |||  |||||||||| ||||| ||| |||
seq2  CCTTATGAATATCGATGCAAGAATATTCAATAAAATCCTCGCAAACTGAA  300

seq1  TCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATT  350
      ||||||||||||| ||| | |||||||||| ||||| |||||| || || 
seq2  TCCAAGAACACATCAAAACGATCATCCATCATGACCGAGTAGGCTTCATC  350

seq1  CCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAACGTAATCCA  400
      | ||| ||| | |||||||| |||||||  ||||||||||||||||||||
seq2  CAAGGAATGAAAGGATGGTTGAATATACAGAAATCCATCAACGTAATCCA  400

seq1  TTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG  450
       |||||||||||| |||||||||||||  | ||| |||||||||||||||
seq2  CTATATAAACAAATTCAAAGACAAAAATAATATGGTCATCTCGTTAGATG  450

seq1  CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTG  500
      | || |||| |||||| || ||||| ||||| || || ||||||| | ||
seq2  CTGAGAAAGAATTTGA-AAAATCCATCACCCCTTTATTATAAAAG-TCTG  498

seq1  GAAAGATCAGGAATTC  516
      ||||||||||||||||
seq2  GAAAGATCAGGAATTC  514

seq1: chr12_37557943_37559052
seq2: B6Ng01-319H02.g_68_1182

seq1  GAATTCCAAATGCTGTCAAAAACTCAGACTGAATTAGCAGGAGGTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGCTGTCAAAAACTCAGACTGAATTAGCAGGAGGTGGAAA  50

seq1  AGGGAAGTGAAAAAGAGCAGACATACGAATTCACCGACCCGGCTTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGAAAAAGAGCAGACATACGAATTCACCGACCCGGCTTTTTAT  100

seq1  CCTACGTACTCTTGAGGTCACATCGGTGGCTTTGCTTTCATGCCAGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGTACTCTTGAGGTCACATCGGTGGCTTTGCTTTCATGCCAGGAGC  150

seq1  AGTGCAAGTCATAATTAGAATATGGAACACTGCAGAAAAAGGGGAACGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAGTCATAATTAGAATATGGAACACTGCAGAAAAAGGGGAACGGA  200

seq1  CCCCATCTGTACAGCCACGCTAACTACAAGTCCAGAACCTGTTTTACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTGTACAGCCACGCTAACTACAAGTCCAGAACCTGTTTTACAGC  250

seq1  TGAGGCACAAAGACTGCATTAAGACATGTGGTTAGTTCTTTCTCTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACAAAGACTGCATTAAGACATGTGGTTAGTTCTTTCTCTATACA  300

seq1  TACTGTAGGTTCATTGTGTCTGTGTCTCCTCGGTGGAGCTAATGCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGGTTCATTGTGTCTGTGTCTCCTCGGTGGAGCTAATGCAGTCA  350

seq1  TACAATATTTTGTCCTCTCTTTGCTGCTGGAGTTCCTTTCTCACCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATTTTGTCCTCTCTTTGCTGCTGGAGTTCCTTTCTCACCAGATG  400

seq1  CAGCAAACCCTTTCCTAAGCCGCTCTGCCTGTGCTGCTCTGCACATTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACCCTTTCCTAAGCCGCTCTGCCTGTGCTGCTCTGCACATTGAC  450

seq1  ACCCGTCAGCTTGCAAGTGAGCAGGGCTGTCAGCGCTGGATATTTTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTCAGCTTGCAAGTGAGCAGGGCTGTCAGCGCTGGATATTTTCCCC  500

seq1  TCCATTGTCACTGGTCTAATGACATCCTCTGGTTTATGTGCTTTTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCACTGGTCTAATGACATCCTCTGGTTTATGTGCTTTTCTCCC  550

seq1  CAACACCACCGTAAGCTAGAATAACTCACTCAGTCTGAGTGTTAGGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCACCGTAAGCTAGAATAACTCACTCAGTCTGAGTGTTAGGTACC  600

seq1  TCTCCTATAATTCATGCCAACTGAAGGAAATCCCCACACTTAAGGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATAATTCATGCCAACTGAAGGAAATCCCCACACTTAAGGACAAA  650

seq1  CGGTGCAGCATGTGTACTGAATAGGGGGCAGTCTCCATGTGTAAATGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCAGCATGTGTACTGAATAGGGGGCAGTCTCCATGTGTAAATGTTC  700

seq1  CATTTATTGTAATGAAACTATACATCTCACCGTGCACGCCACTATTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTGTAATGAAACTATACATCTCACCGTGCACGCCACTATTTTTA  750

seq1  TTGCAGATAAAGAAAAAAATTAGAAATGGGATGTCCCAGTACAATAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATAAAGAAAAAAATTAGAAATGGGATGTCCCAGTACAATAGGAT  800

seq1  CATTATTCCAAAACTCACATTGGAATTAAAGGAGAACTGTGTAGATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCCAAAACTCACATTGGAATTAAAGGAGAACTGTGTAGATTTAT  850

seq1  ATTGATCTCAGGTTCTAATTTATTAT-GGAAGTTTGGTAATTGATTGTTA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTGATCTCAGGTTCTAATTTATTATGGGAAGTTTGGTAATTGATTGTTA  900

seq1  ATTATGAC-TTAAACACAAGTGTTGACTG-AATCATGGTATTAATGGCTC  947
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  ATTATGACTTTAAACACAAGTGTTGACTGAAATCATGGTATTAATGGCTC  950

seq1  TCTTTGGGACTTTT---ATTTTAGATAGCATTACTTTATCCAGACT-GGG  993
      ||||||||||||||    |||||||||||||||||||||||||||| |||
seq2  TCTTTGGGACTTTTTTATTTTTAGATAGCATTACTTTATCCAGACTGGGG  1000

seq1  TATGAGGTTTTGATTACAAGGTTATGCCAACATAAGCATGAAAAT-AAAA  1042
      ||||||||||||||||||||| ||||||||||| ||||||||||| ||||
seq2  TATGAGGTTTTGATTACAAGG-TATGCCAACAT-AGCATGAAAATAAAAA  1048

seq1  CACTCAGATTTTCACAAATCAATAGCATTAAGCACATAGTAG-ATGTCCA  1091
      ||||||||||||||||| ||| |||||||||||||||||||| |||| ||
seq2  CACTCAGATTTTCACAATTCATTAGCATTAAGCACATAGTAGAATGT-CA  1097

seq1  AAAATACAATTATTTTGAC  1110
      ||||||| |||||||||||
seq2  AAAATAC-ATTATTTTGAC  1115