BAC Information

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BAC

Clone NameB6Ng01-321A11
Chromosome12 (Build37)
Map Location 85,071,393 - 85,208,507
singlet/doubletdoublet
Overlap genePsen1, Papln, Numb
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950, Rbm25
Downstream geneLOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321A11.bB6Ng01-321A11.g
ACCGA110248GA110249
length1,171463
definitionB6Ng01-321A11.b B6Ng01-321A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,207,343 - 85,208,507)(85,071,393 - 85,071,861)
sequence
gaattctttatttctattttcctctttctggcagaatttcctggtggtgg
tcaattaagacaaaggactttccttctagagtccaggcagcttaaaaatg
ggtttctcaaaatcttttttctttgtgatatgtgcttactcgtcagagta
gccactgtatcttagtaagagaacttattggcaaaacaaccactggagca
gaaaactgacctgcctaatgctgatgagttgttgttttaaacctgtgaca
tgattcacaacattagaacaccggaccagccttttccttctttggaggta
gagggggcagaggtagaaaagaggataagaaaggatactgaactgctata
aaggattaagtaatacagtaaatgaatatttagttatctgtagtcatttt
gatcaaagcctttcattaagtataatttgaaggcctctaaaacgtagcag
ttcccaaatcacattaaacaaataaaggtgtaggtgagcctagagccttt
tctctatagagatctagagaagcccacgagctgtgttttagctgagttca
cagttcctcattgtgtgtgttagctttactctttacgtctttatttattt
aaaattgtaataaacagtaaaggagagattcatagtattaggaactttta
gaggtaactggcttggtgacagcgtgaaagtggttaagtaagggcagcta
ctttgaagaggcggtacttgagcaaggctctgaaggatatatacagatca
atttcagggaaagtaatggcttgtgagaactatggactgcagactttgag
atgagaatcatggaagatttaaagctttaaagaaagctgagatagttgtt
ggcactttgtaagccatagtaaggatttttcttacagtttccctttttct
tccatctctaatctgatcattaatatgatgctacttttcattagtctcct
ctgtcccagacagatgtatttattctatagaattatgttaggtatctttt
attgataaaattctaaatttgggtactatagtagattcagaaaatgtgct
tatttctgcagtgctggaactcaacccagttctataacataactgtgttc
tcagcctaaacagtactttagtatcaacctaaggttaatgtaaaggtgta
gctcatgaccttccttttctt
ctgtgcttgccttaactgatactccgccctctggaacgtggcggcgatgg
tctaaggattaagtgctctgattaaccttctctcttaaaggagcggagag
agagacacaggacagtggttctgggaacgatgatggtggcttcagtgagg
agtgggaggcccaaagagacagtcacctggggcctcatcgctccactccc
gagtcaagagctgctgtccaggaactttctgggagcattctaacgagtga
agacccggaggaaagtacgtgcatcacctctgcctgacatcacggcggtg
acatcacggcggtctgtcagtggcagggttatctgtctttcagaggatgt
tgagtttttctggggaaatagcttattcaggtgtttgccacacaaacata
agaggctgagtttaatctccagcactgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85207343_85208507
seq2: B6Ng01-321A11.b_45_1215 (reverse)

seq1  AAGAAA------GTCATGGAGCTACA-CTTAACATTAAACTTAGTTTGAT  43
      ||||||      ||||| |||||||| ||| ||||||| ||||| |||||
seq2  AAGAAAAGGAAGGTCAT-GAGCTACACCTTTACATTAACCTTAGGTTGAT  49

seq1  ACTAAAGTAACTGTTTAGGCTGAGGACACAGTTATG-TATAGAACCTGGT  92
      |||||||| ||||||||||||||| ||||||||||| ||||||| |||| 
seq2  ACTAAAGT-ACTGTTTAGGCTGAGAACACAGTTATGTTATAGAA-CTGGG  97

seq1  TTGAGTTCCAGCACTGCAG-AATAGCCACATTTTCCTGAATCTACTATAG  141
      ||||||||||||||||||| ||||  |||||||| |||||||||||||||
seq2  TTGAGTTCCAGCACTGCAGAAATAAGCACATTTT-CTGAATCTACTATAG  146

seq1  TA-CCAAATTTAGAATTTTATCAATAAAAGATACCTAACATAATTCTATA  190
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAATTTAGAATTTTATCAATAAAAGATACCTAACATAATTCTATA  196

seq1  GAATAAATACATCTGTCTGGGACAGAGGAGACTAATGAAAAGTAGCATCA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATACATCTGTCTGGGACAGAGGAGACTAATGAAAAGTAGCATCA  246

seq1  TATTAATGATCAGATTAGAGATGGAAGAAAAAGGGAAACTGTAAGAAAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGATCAGATTAGAGATGGAAGAAAAAGGGAAACTGTAAGAAAAA  296

seq1  TCCTTACTATGGCTTACAAAGTGCCAACAACTATCTCAGCTTTCTTTAAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTATGGCTTACAAAGTGCCAACAACTATCTCAGCTTTCTTTAAA  346

seq1  GCTTTAAATCTTCCATGATTCTCATCTCAAAGTCTGCAGTCCATAGTTCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAATCTTCCATGATTCTCATCTCAAAGTCTGCAGTCCATAGTTCT  396

seq1  CACAAGCCATTACTTTCCCTGAAATTGATCTGTATATATCCTTCAGAGCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCATTACTTTCCCTGAAATTGATCTGTATATATCCTTCAGAGCC  446

seq1  TTGCTCAAGTACCGCCTCTTCAAAGTAGCTGCCCTTACTTAACCACTTTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAGTACCGCCTCTTCAAAGTAGCTGCCCTTACTTAACCACTTTC  496

seq1  ACGCTGTCACCAAGCCAGTTACCTCTAAAAGTTCCTAATACTATGAATCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTCACCAAGCCAGTTACCTCTAAAAGTTCCTAATACTATGAATCT  546

seq1  CTCCTTTACTGTTTATTACAATTTTAAATAAATAAAGACGTAAAGAGTAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTACTGTTTATTACAATTTTAAATAAATAAAGACGTAAAGAGTAA  596

seq1  AGCTAACACACACAATGAGGAACTGTGAACTCAGCTAAAACACAGCTCGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACACACACAATGAGGAACTGTGAACTCAGCTAAAACACAGCTCGT  646

seq1  GGGCTTCTCTAGATCTCTATAGAGAAAAGGCTCTAGGCTCACCTACACCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTCTAGATCTCTATAGAGAAAAGGCTCTAGGCTCACCTACACCT  696

seq1  TTATTTGTTTAATGTGATTTGGGAACTGCTACGTTTTAGAGGCCTTCAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTAATGTGATTTGGGAACTGCTACGTTTTAGAGGCCTTCAAA  746

seq1  TTATACTTAATGAAAGGCTTTGATCAAAATGACTACAGATAACTAAATAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTAATGAAAGGCTTTGATCAAAATGACTACAGATAACTAAATAT  796

seq1  TCATTTACTGTATTACTTAATCCTTTATAGCAGTTCAGTATCCTTTCTTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACTGTATTACTTAATCCTTTATAGCAGTTCAGTATCCTTTCTTA  846

seq1  TCCTCTTTTCTACCTCTGCCCCCTCTACCTCCAAAGAAGGAAAAGGCTGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTCTACCTCTGCCCCCTCTACCTCCAAAGAAGGAAAAGGCTGG  896

seq1  TCCGGTGTTCTAATGTTGTGAATCATGTCACAGGTTTAAAACAACAACTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTGTTCTAATGTTGTGAATCATGTCACAGGTTTAAAACAACAACTC  946

seq1  ATCAGCATTAGGCAGGTCAGTTTTCTGCTCCAGTGGTTGTTTTGCCAATA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATTAGGCAGGTCAGTTTTCTGCTCCAGTGGTTGTTTTGCCAATA  996

seq1  AGTTCTCTTACTAAGATACAGTGGCTACTCTGACGAGTAAGCACATATCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTTACTAAGATACAGTGGCTACTCTGACGAGTAAGCACATATCA  1046

seq1  CAAAGAAAAAAGATTTTGAGAAACCCATTTTTAAGCTGCCTGGACTCTAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAAAAGATTTTGAGAAACCCATTTTTAAGCTGCCTGGACTCTAG  1096

seq1  AAGGAAAGTCCTTTGTCTTAATTGACCACCACCAGGAAATTCTGCCAGAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGTCCTTTGTCTTAATTGACCACCACCAGGAAATTCTGCCAGAA  1146

seq1  AGAGGAAAATAGAAATAAAGAATTC  1165
      |||||||||||||||||||||||||
seq2  AGAGGAAAATAGAAATAAAGAATTC  1171

seq1: chr12_85071393_85071861
seq2: B6Ng01-321A11.g_65_533

seq1  GAATTCCTGTGCTTGCCTTAACTGATACTCCGCCCTCTGGAACGTGGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGCTTGCCTTAACTGATACTCCGCCCTCTGGAACGTGGCGG  50

seq1  CGATGGTCTAAGGATTAAGTGCTCTGATTAACCTTCTCTCTTAAAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTCTAAGGATTAAGTGCTCTGATTAACCTTCTCTCTTAAAGGAGC  100

seq1  GGAGAGAGAGACACAGGACAGTGGTTCTGGGAACGATGATGGTGGCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGACACAGGACAGTGGTTCTGGGAACGATGATGGTGGCTTCA  150

seq1  GTGAGGAGTGGGAGGCCCAAAGAGACAGTCACCTGGGGCCTCATCGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGTGGGAGGCCCAAAGAGACAGTCACCTGGGGCCTCATCGCTCC  200

seq1  ACTCCCGAGTCAAGAGCTGCTGTCCAGGAACTTTCTGGGAGCATTCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCGAGTCAAGAGCTGCTGTCCAGGAACTTTCTGGGAGCATTCTAAC  250

seq1  GAGTGAAGACCCGGAGGAAAGTACGTGCATCACCTCTGCCTGACATCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGACCCGGAGGAAAGTACGTGCATCACCTCTGCCTGACATCACG  300

seq1  GCGGTGACATCACGGCGGTCTGTCAGTGGCAGGGTTATCTGTCTTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGACATCACGGCGGTCTGTCAGTGGCAGGGTTATCTGTCTTTCAGA  350

seq1  GGATGTTGAGTTTTTCTGGGGAAATAGCTTATTCAGGTGTTTGCCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGAGTTTTTCTGGGGAAATAGCTTATTCAGGTGTTTGCCACACA  400

seq1  AACATAAGAGGCTGAGTTTAATCTCCAGCACTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGAGGCTGAGTTTAATCTCCAGCACTGTGTGTGTGTGTGTGTGT  450

seq1  GTGTGTGTGTGTGTGTGTG  469
      |||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTG  469