BAC Information

Click to search

BAC

Clone NameB6Ng01-321H13
Chromosome16 (Build37)12 (Build37)
Map Location 34,833,821 - 34,833,96246,269,924 - 46,271,111
singlet/doubletsingletsinglet
Overlap geneMylk
Upstream geneItgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14
Downstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321H13.bB6Ng01-321H13.g
ACCGA110567GA110568
length6091,179
definitionB6Ng01-321H13.b B6Ng01-321H13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,833,821 - 34,833,962)(46,269,924 - 46,271,111)
sequence
gaattcagagattttaaaattcagaagagcataggaagatgttctacaga
ctctaaaagaccatagatgccagcacagactactataccaagcaaaagtt
tcaatcataatgataaaaaccaaattcacacaacatctaactacaaatcc
agagctatatacagtcctattaggaaaattgcaacctaaggttaatagca
ttcaggaaaacactagtcataaataatcccaaagctacaaataaacagag
atgaaacacacatataccacaactgcaaatttatagtagtaacaaatact
attcaccgatatctcaacatcagtggtattacttcctcaataaaaagaga
cagactaacagaatggatgccaaaagagaatccatccttttgtgacctcc
cagtggcattccttatatcaaggacagacaacactgcaggataaaagggt
ggtcaaagatattctaagctctgggacaaaagaacaacaacaacaacaac
aaaaaacaagctggtgtagccattttgtgtagacttcaaacaaaaactaa
tccaaagacatatgaaaatactatatatatgtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
gaattcttttttaaaaatggtttatttattttatatgagtactgtactgt
agctgtcatcagacatatcagaagagggcatcgagtccattacagatggt
tgtgagccaccatgtggttgctgggaatttaactcaggacctttggaaga
gcagtcagtgctcttaaccgctgatccatctcttcagcccttagttgaat
tcctaatcacgactaattgacaaagcatgtaattacaaaattttaggatc
atgttaatgtggctcagagttttcttttctaaatttgagaatttcaagtt
cttcaaacactgggcatgagagggaagtttatctatgggagttctaatag
tatagacaaatttatgaattatttgactcattcttctatgaagatattta
ctaatgtatcttgatgggcttcagattttaaagaaagattctgagatgac
ttaaatcattctcttgatagaaaagaaattttgttagccttttcttcatt
gtttgttttctattcaatactattggtaaaattgtcataattataaaaaa
aacaatcagagccttaaaaagaaaaactcaggaccttaccaaccacaatg
tggaagtttttgggtattttgcataggacaatctaggaggttcccctgct
ttccctatacagtgctactcagtgaggtcaaagcatctgggagcagaact
gaacaaagtgagaacttcctatggacatgcactttgcaagcaaatacaaa
tatctttttaagcatgttttgcatgtcccgtgaatggctcaagttagaag
aaagattctatcccctcacatcttcctgtgatgaagcctggatatctcta
tcagtgtcactcttggaaataaatcatgatggttaattgtcactgactag
tccccacctctgcctctttcccatttggttcctagtgttctgtaaattgc
tcaagtatccaataattactcttagagaaaagtatgggtgcagaattaca
gagaggtagaaacaagttctgagacttcatccctaagagattcatgaatg
aggtggttatatgcctggaagggacagccctgtagaagagacggtaatct
acttaaggtttttgggactatgacatggccatccacttagcaatattaac
actgatggcttactaagttagagtgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34833821_34833962
seq2: B6Ng01-321H13.b_523_654 (reverse)

seq1  CACACACACACAATTTACACTGTTACAATCACACATACACACACACATAT  50
                                     |||| ||||||||||| | 
seq2  -------------------------------CACACACACACACACACAC  19

seq1  ACTCACACACACAGCTACACTCTTTTTTTTTCTTTTTCTTTTTCTTTTTT  100
      || |||||||| |  || | | ||||  | | | |||   ||  ||||| 
seq2  ACACACACACATATATATAGTATTTTCATATGTCTTTGGATTAGTTTTTG  69

seq1  TTT----TTT-------TTGGC----------TGGGTTTTGTTGTTGTTG  129
      |||    | |        ||||          ||  ||||||||||||||
seq2  TTTGAAGTCTACACAAAATGGCTACACCAGCTTGTTTTTTGTTGTTGTTG  119

seq1  TTGTTGTTGTTTT  142
      |||||||| ||||
seq2  TTGTTGTTCTTTT  132

seq1: chr12_46269924_46271111
seq2: B6Ng01-321H13.g_65_1243

seq1  GAATTCTTTTTTAAAAATGGTTTATTTATTTTATATGAGTACTGTACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTAAAAATGGTTTATTTATTTTATATGAGTACTGTACTGT  50

seq1  AGCTGTCATCAGACATATCAGAAGAGGGCATCGAGTCCATTACAGATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCATCAGACATATCAGAAGAGGGCATCGAGTCCATTACAGATGGT  100

seq1  TGTGAGCCACCATGTGGTTGCTGGGAATTTAACTCAGGACCTTTGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGTTGCTGGGAATTTAACTCAGGACCTTTGGAAGA  150

seq1  GCAGTCAGTGCTCTTAACCGCTGATCCATCTCTTCAGCCCTTAGTTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTGCTCTTAACCGCTGATCCATCTCTTCAGCCCTTAGTTGAAT  200

seq1  TCCTAATCACGACTAATTGACAAAGCATGTAATTACAAAATTTTAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATCACGACTAATTGACAAAGCATGTAATTACAAAATTTTAGGATC  250

seq1  ATGTTAATGTGGCTCAGAGTTTTCTTTTCTAAATTTGAGAATTTCAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATGTGGCTCAGAGTTTTCTTTTCTAAATTTGAGAATTTCAAGTT  300

seq1  CTTCAAACACTGGGCATGAGAGGGAAGTTTATCTATGGGAGTTCTAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACACTGGGCATGAGAGGGAAGTTTATCTATGGGAGTTCTAATAG  350

seq1  TATAGACAAATTTATGAATTATTTGACTCATTCTTCTATGAAGATATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAAATTTATGAATTATTTGACTCATTCTTCTATGAAGATATTTA  400

seq1  CTAATGTATCTTGATGGGCTTCAGATTTTAAAGAAAGATTCTGAGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTATCTTGATGGGCTTCAGATTTTAAAGAAAGATTCTGAGATGAC  450

seq1  TTAAATCATTCTCTTGATAGAAAAGAAATTTTGTTAGCCTTTTCTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATTCTCTTGATAGAAAAGAAATTTTGTTAGCCTTTTCTTCATT  500

seq1  GTTTGTTTTCTATTCAATACTATTGGTAAAATTGTCATAATTATAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCTATTCAATACTATTGGTAAAATTGTCATAATTATAAAAAA  550

seq1  AACAATCAGAGCCTTAAAAAGAAAAACTCAGGACCTTACCAACCACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAGAGCCTTAAAAAGAAAAACTCAGGACCTTACCAACCACAATG  600

seq1  TGGAAGTTTTTGGGTATTTTGCATAGGACAATCTAGGAGGTTCCCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTTTGGGTATTTTGCATAGGACAATCTAGGAGGTTCCCCTGCT  650

seq1  TTCCCTATACAGTGCTACTCAGTGAGGTCAAAGCATCTGGGAGCAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATACAGTGCTACTCAGTGAGGTCAAAGCATCTGGGAGCAGAACT  700

seq1  GAACAAAGTGAGAACTTCCTATGGACATGCACTTTGCAAGCAAATACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTGAGAACTTCCTATGGACATGCACTTTGCAAGCAAATACAAA  750

seq1  TATCTTTTTAAGCATGTTTTGCATGTCCCGTGAATGGCTCAAGTTAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTAAGCATGTTTTGCATGTCCCGTGAATGGCTCAAGTTAGAAG  800

seq1  AAAGATTCTATCCCCTCACATCTTCCTGTGATGAAGCCTGGATATCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTATCCCCTCACATCTTCCTGTGATGAAGCCTGGATATCTCTA  850

seq1  TCAGTGTCACTCTTGGAAATAAATCATGATGGTTAATTGTCACTGACTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCACTCTTGGAAATAAATCATGATGGTTAATTGTCACTGACTAG  900

seq1  TCCCCACCTCTGCCTCTTTCCCATTTGGTTCCTAGTGTTCTGTAAATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCTCTGCCTCTTTCCCATTTGGTTCCTAGTGTTCTGTAAATTGC  950

seq1  TCAAGTATCCAATAATTACTCTTAGAGAAAAGGTATGGGTGCAGAAATAA  1000
      ||||||||||||||||||||||||||||||| |||||||||||||| || 
seq2  TCAAGTATCCAATAATTACTCTTAGAGAAAA-GTATGGGTGCAGAATTA-  998

seq1  CAAGAGAAGTAGAAACAAGTCCTGAGAACTTCATCACTAAGAGATTCATG  1050
        ||||| |||||||||||| ||||| |||||||| ||||||||||||||
seq2  -CAGAGAGGTAGAAACAAGTTCTGAG-ACTTCATCCCTAAGAGATTCATG  1046

seq1  AATGAGGTTGGTTATATGCCTGGAAAGGGACAGCCCTGTAGAAGAGACGG  1100
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AATGAGG-TGGTTATATGCCTGG-AAGGGACAGCCCTGTAGAAGAGACGG  1094

seq1  TAATTCTACTAAAGGTTTTTGGGACTATTTGACATGGCATTCCACTTAGC  1150
      ||| |||||| ||||||||||||||||  |||||||||  ||||||||||
seq2  TAA-TCTACTTAAGGTTTTTGGGACTA--TGACATGGCCATCCACTTAGC  1141

seq1  -ATATATACACTGAATGCCTACTAAGTTAAGAGTGTCAG  1188
       ||||  |||||||  || ||||||||| ||||||||||
seq2  AATATTAACACTGATGGCTTACTAAGTT-AGAGTGTCAG  1179