BAC Information

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BAC

Clone NameB6Ng01-322G02
Chromosome12 (Build37)
Map Location 48,516,050 - 48,659,300
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664952, Nova1, LOC100039190
Downstream geneEG664891, Gm1818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322G02.bB6Ng01-322G02.g
ACCGA111235GA111236
length1,1801,164
definitionB6Ng01-322G02.b B6Ng01-322G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,658,125 - 48,659,300)(48,516,050 - 48,517,196)
sequence
gaattcctcaattctattgcagtctcataaccccatttggcactctacga
tatttgtgtaaggtgtaactttatagttaatattaatgatattatcagac
ttagggagcacagactctcccccaaagaacattcagccaatattaatatt
agaaaacaggagaagatgatttattcaatgtgatcatatttggaagaaga
acaaagagatccagaacttctctccctctatattcatcttctaagtactg
cagttacattgaatttttacatagacagccaagtatatgcacatccaagc
aataaaagtctctctcacctttgacctgtcattgtatggatttcagtctc
attatgtaaggcaatctgagaacttgttagaactgtatggaatcttttat
tttcaggaggcaacttttcctcatgtctggagccttttctattccatgca
gacgattcctaaaaaatttctcattatttgggggtccactactatgtgag
tctaataagagttggaaaacacaaatttcctttcagaataggctcatttc
taccaggcctgtcactgtaattaagataggaataagagaaccaggtgttt
accctgggaagtctcttaagaaagtgggcatttgtgtcaaaaattaaaaa
acaaaacatgaaaaacaaaacaaaataaaacaagcaaaataacaatgaaa
acacactgtattatcctgttttctgaaatcatttttactccataaattct
gacattgttcaaagacataaaaatggacatttatgattctctcatgccat
gctctctacaaaaacctgggagacactttggaaaacatgaccataggaag
caaaatttgtcatataccaatcttcaagcatttgttgcttgtattgtagc
catgattcccagttgtggttgctttcatttgagcagaaatacttgttaaa
atatgcctttgcttttgttattaagaataataattagtagtaaatataat
ggattttttatagttttgtctaaaatattatagagccgatatattttatg
aaaccaaattgaatacatatttctgtgctgtagagtaaggtattatatat
ataaccagaaaaatactgcattctcagtattctctgaatatataatatat
ttactacatgatatattggaatagaacaac

gaattcttcatagaatgtttaagtgagagaatcttacattctggtttctt
gagtatattttcaaaataattatgatcttttcatattgtggtagactcag
catggtaagcgtagtaatgttattccatagagttaactccctgtgtctct
ttcagaaggaactttagagatacatatccgtaaaattagtgatccacaaa
tataattaataaaaggtctcagatgaaacaatactgaattgatagtgtac
tctgaatttgttgcttggtttactcctaagagcaagatttacaactatgc
agtgtgtctgtagctaaagaactctccagacatgaagaaacattcactcc
gagggcacatgtcatttgtaaaagttctacaatacatgcaagttaattcc
tattgtgttatccccagtgtgcagaattttgttatgttattctagaaagg
tcatagaatgagaaattaatattccctgaataactctaaattcgtgaata
ttttctattcttttgtgcctggtgcttgtttaactttgttatagggcctg
tctagaatgttaatgatacatttttcagaatgttaactataataatttaa
agtaatattttaaaataagaacatatagctttcaatatgatatcaaacac
aaggttccaaacttgtttgatgtacatattttgtgaaattttgtttcagc
tatgtttgtgtgtgtcattagaggtggcaaagtaaaatatgcattgtaat
ttgagataaaatgataaacatagttgaaagccattagttcagagacaggc
cacttgtgtactggattgagaacagtaaactttatagtgaaagaaatgaa
acgtttaaaataaacaaacctggttctttatctcttgttactctttatcc
tagtaaatgtgggaaaacagcatgagaagtaaacattgaaactgaagaca
aaagcaaccttgatcacagtaataatgaatcctcaatatttctcttaatg
ttgttctagcacatctagtgactaactacatttgccacccctgaatgttc
tgttatgtgaaaaataaatttattattttgtggaatggttgttttctttt
aagctaagtgctagtgttgtggagtaaatattaaggctccattatatatc
tgggaaatttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48658125_48659300
seq2: B6Ng01-322G02.b_49_1228 (reverse)

seq1  GTTGTTCTA-TCATATATAT-ATATA-TATATATATATATATATATCAGA  47
      ||||||||| ||  |||||| || || || |||||| ||||||| |||||
seq2  GTTGTTCTATTCCAATATATCATGTAGTAAATATAT-TATATAT-TCAGA  48

seq1  GAAATAAGTGAGAATGCAGTA-TTTTCTGGT--TATATATAATACC-TAC  93
      |||   | ||||||||||||| |||||||||  ||||||||||||| |||
seq2  GAA--TACTGAGAATGCAGTATTTTTCTGGTTATATATATAATACCTTAC  96

seq1  TCTACAGCACAG-AATATGGTTATTC-ATTTGGTTTCAT-AAATATATCG  140
      |||||||||||| ||||||  ||||| |||||||||||| ||||||||||
seq2  TCTACAGCACAGAAATATG--TATTCAATTTGGTTTCATAAAATATATCG  144

seq1  GCTCCTATAATATTTTAGACAAAACTAT-AAAAATCCATTATATTTACTA  189
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCT-CTATAATATTTTAGACAAAACTATAAAAAATCCATTATATTTACTA  193

seq1  CTAATTATTATTCTTAATAACAAAAGCAAAGGCATATTTTAACAAGTATT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTATTCTTAATAACAAAAGCAAAGGCATATTTTAACAAGTATT  243

seq1  TCTGCTCAAATGAAAGCAACCACAACTGGGAATCATGGCTACAATACAAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCAAATGAAAGCAACCACAACTGGGAATCATGGCTACAATACAAG  293

seq1  CAACAAATGCTTGAAGATTGGTATATGACAAATTTTGCTTCCTATGGTCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGCTTGAAGATTGGTATATGACAAATTTTGCTTCCTATGGTCA  343

seq1  TGTTTTCCAAAGTGTCTCCCAGGTTTTTGTAGAGAGCATGGCATGAGAGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAAAGTGTCTCCCAGGTTTTTGTAGAGAGCATGGCATGAGAGA  393

seq1  ATCATAAATGTCCATTTTTATGTCTTTGAACAATGTCAGAATTTATGGAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATGTCCATTTTTATGTCTTTGAACAATGTCAGAATTTATGGAG  443

seq1  TAAAAATGATTTCAGAAAACAGGATAATACAGTGTGTTTTCATTGTTATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGATTTCAGAAAACAGGATAATACAGTGTGTTTTCATTGTTATT  493

seq1  TTGCTTGTTTTATTTTGTTTTGTTTTTCATGTTTTGTTTTTTAATTTTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTTATTTTGTTTTGTTTTTCATGTTTTGTTTTTTAATTTTTG  543

seq1  ACACAAATGCCCACTTTCTTAAGAGACTTCCCAGGGTAAACACCTGGTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGCCCACTTTCTTAAGAGACTTCCCAGGGTAAACACCTGGTTC  593

seq1  TCTTATTCCTATCTTAATTACAGTGACAGGCCTGGTAGAAATGAGCCTAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCTATCTTAATTACAGTGACAGGCCTGGTAGAAATGAGCCTAT  643

seq1  TCTGAAAGGAAATTTGTGTTTTCCAACTCTTATTAGACTCACATAGTAGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGGAAATTTGTGTTTTCCAACTCTTATTAGACTCACATAGTAGT  693

seq1  GGACCCCCAAATAATGAGAAATTTTTTAGGAATCGTCTGCATGGAATAGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCCAAATAATGAGAAATTTTTTAGGAATCGTCTGCATGGAATAGA  743

seq1  AAAGGCTCCAGACATGAGGAAAAGTTGCCTCCTGAAAATAAAAGATTCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCCAGACATGAGGAAAAGTTGCCTCCTGAAAATAAAAGATTCCA  793

seq1  TACAGTTCTAACAAGTTCTCAGATTGCCTTACATAATGAGACTGAAATCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCTAACAAGTTCTCAGATTGCCTTACATAATGAGACTGAAATCC  843

seq1  ATACAATGACAGGTCAAAGGTGAGAGAGACTTTTATTGCTTGGATGTGCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGACAGGTCAAAGGTGAGAGAGACTTTTATTGCTTGGATGTGCA  893

seq1  TATACTTGGCTGTCTATGTAAAAATTCAATGTAACTGCAGTACTTAGAAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTGGCTGTCTATGTAAAAATTCAATGTAACTGCAGTACTTAGAAG  943

seq1  ATGAATATAGAGGGAGAGAAGTTCTGGATCTCTTTGTTCTTCTTCCAAAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATAGAGGGAGAGAAGTTCTGGATCTCTTTGTTCTTCTTCCAAAT  993

seq1  ATGATCACATTGAATAAATCATCTTCTCCTGTTTTCTAATATTAATATTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACATTGAATAAATCATCTTCTCCTGTTTTCTAATATTAATATTG  1043

seq1  GCTGAATGTTCTTTGGGGGAGAGTCTGTGCTCCCTAAGTCTGATAATATC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGTTCTTTGGGGGAGAGTCTGTGCTCCCTAAGTCTGATAATATC  1093

seq1  ATTAATATTAACTATAAAGTTACACCTTACACAAATATCGTAGAGTGCCA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTAACTATAAAGTTACACCTTACACAAATATCGTAGAGTGCCA  1143

seq1  AATGGGGTTATGAGACTGCAATAGAATTGAGGAATTC  1176
      |||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTTATGAGACTGCAATAGAATTGAGGAATTC  1180


seq1: chr12_48516050_48517196
seq2: B6Ng01-322G02.g_69_1232

seq1  GAATTCTTCATAGAATGTTTAAGTGAGAGAATCTTACATTCTGGTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAGAATGTTTAAGTGAGAGAATCTTACATTCTGGTTTCTT  50

seq1  GAGTATATTTTCAAAATAATTATGATCTTTTCATATTGTGGTAGACTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATTTTCAAAATAATTATGATCTTTTCATATTGTGGTAGACTCAG  100

seq1  CATGGTAAGCGTAGTAATGTTATTCCATAGAGTTAACTCCCTGTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAAGCGTAGTAATGTTATTCCATAGAGTTAACTCCCTGTGTCTCT  150

seq1  TTCAGAAGGAACTTTAGAGATACATATCCGTAAAATTAGTGATCCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGGAACTTTAGAGATACATATCCGTAAAATTAGTGATCCACAAA  200

seq1  TATAATTAATAAAAGGTCTCAGATGAAACAATACTGAATTGATAGTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAATAAAAGGTCTCAGATGAAACAATACTGAATTGATAGTGTAC  250

seq1  TCTGAATTTGTTGCTTGGTTTACTCCTAAGAGCAAGATTTACAACTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTGTTGCTTGGTTTACTCCTAAGAGCAAGATTTACAACTATGC  300

seq1  AGTGTGTCTGTAGCTAAAGAACTCTCCAGACATGAAGAAACATTCACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTGTAGCTAAAGAACTCTCCAGACATGAAGAAACATTCACTCC  350

seq1  GAGGGCACATGTCATTTGTAAAAGTTCTACAATACATGCAAGTTAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACATGTCATTTGTAAAAGTTCTACAATACATGCAAGTTAATTCC  400

seq1  TATTGTGTTATCCCCAGTGTGCAGAATTTTGTTATGTTATTCTAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTTATCCCCAGTGTGCAGAATTTTGTTATGTTATTCTAGAAAGG  450

seq1  TCATAGAATGAGAAATTAATATTCCCTGAATAACTCTAAATTCGTGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAATGAGAAATTAATATTCCCTGAATAACTCTAAATTCGTGAATA  500

seq1  TTTTCTATTCTTTTGTGCCTGGTGCTTGTTTAACTTTGTTATAGGGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTCTTTTGTGCCTGGTGCTTGTTTAACTTTGTTATAGGGCCTG  550

seq1  TCTAGAATGTTAATGATACATTTTTCAGAATGTTAACTATAATAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATGTTAATGATACATTTTTCAGAATGTTAACTATAATAATTTAA  600

seq1  AGTAATATTTTAAAATAAGAACATATAGCTTTCAATATGATATCAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATTTTAAAATAAGAACATATAGCTTTCAATATGATATCAAACAC  650

seq1  AAGGTTCCAAACTTGTTTGATGTACATATTTTGTGAAATTTTGTTTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCAAACTTGTTTGATGTACATATTTTGTGAAATTTTGTTTCAGC  700

seq1  TATGTTTGTGTGTGTCATTAGAGGTGGCAAAGTAAAATATGCATTGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGTGTGTGTCATTAGAGGTGGCAAAGTAAAATATGCATTGTAAT  750

seq1  TTGAGATAAAATGATAAACATAGTTGAAAGCCATTAGTTCAGAGACAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAAAATGATAAACATAGTTGAAAGCCATTAGTTCAGAGACAGGC  800

seq1  CACTTGTGTACTGGATTGAGAACAGTAAACTTTATAGTGAAAGAAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGTACTGGATTGAGAACAGTAAACTTTATAGTGAAAGAAATGAA  850

seq1  ACGTTTAAAATAAACAAACCTGGTTCTTTATCTCTTGTTACTCTTTATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAAAATAAACAAACCTGGTTCTTTATCTCTTGTTACTCTTTATCC  900

seq1  TAGTAAATGTGGGAAAACAGCATGAGAAGTAAACATTGAAACTGAAGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGTGGGAAAACAGCATGAGAAGTAAACATTGAAACTGAAGACA  950

seq1  AAAGCAACCTTGATCACAGTAATAATGAATCCTCAATATTTCTCTTAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACCTTGATCACAGTAATAATGAATCCTCAATATTTCTCTTAATG  1000

seq1  -TGTTCTAGCACATCTAGTGACTAACTACA-TTGC--ACCCTGAATGTTC  1046
       ||||||||||||||||||||||||||||| ||||   ||||||||||||
seq2  TTGTTCTAGCACATCTAGTGACTAACTACATTTGCCACCCCTGAATGTTC  1050

seq1  TG-TATGTGAAAA--TAATTTATTA-TTTGTGAAATG--TG-TTTCTTTT  1089
      || ||||||||||   ||||||||| |||||| ||||  || ||||||||
seq2  TGTTATGTGAAAAATAAATTTATTATTTTGTGGAATGGTTGTTTTCTTTT  1100

seq1  AAGCT-AGTGCTAGTG-TGT-GAGT-AATATTATGCTTTCA-TATATATC  1134
      ||||| |||||||||| ||| |||| ||||||| |  | || ||||||||
seq2  AAGCTAAGTGCTAGTGTTGTGGAGTAAATATTAAGGCTCCATTATATATC  1150

seq1  T-GGAATTTTATGA  1147
      | |||| |||||||
seq2  TGGGAAATTTATGA  1164


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