BAC Information

Click to search

BAC

Clone NameB6Ng01-322N21
Chromosome12 (Build37)
Map Location 120,857,918 - 120,858,611
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322N21.bB6Ng01-322N21.g
ACCGA111597GA111598
length1,244982
definitionB6Ng01-322N21.b B6Ng01-322N21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccataactaaacatagtacaagcaatatacagcaaacca
gtagccaacttcaaattaaatagagagaaacttgaagcaatcccactaaa
atcagggactagacaaggctgtccactctcttcctacatattcaatatag
tacttgaagtcctatagtacttgaagccagagcaattcaacaacaaaagg
agatcaaggggataccaattggaaaggaagaagtcaaaatatcactattt
gcagatgatatgatagtatataaaagtgaccctaaaaaccacaccagaga
actcctaaacccaataaagaacttcagtgcagtagttggatataaactta
actcaaagaatcagtggcctttctctacacaaaggataaacaggctgaga
aagaaattcaggatataacacccttcacaatagtcacaaatgatataaaa
tatcttggtatgattctaactaaggaagtgaaagatctgtatgataggaa
gttcaagtctctgaagaaggaaatccaagaagatctctgaagatggaaag
gtctcccatgctcatggattggtaggattaatatagtaaaaatggctttc
ttgccaaaagtaatctaccaattcaatgcaattcccatcaaaattcaaac
ttaagtcttcacagagttagaaagggcaatctgcaaattcatctggaata
acaaagaacctaaggtagcaaaaactgttctcaacaataaaagaatctct
gctggaatcaccatgcctgacttcaagctgtactttagagcaattgtgat
aaaaactgcagggccctgatacagtgacagacaggtagatcaatggaata
gaactgaagacccagaaatgaacccacacacctatggtcacttgatcttt
gaaaaaagagctaaaaccatccagtagaaaaaagacagcattttcaacaa
atggtgctagatcaactgggccgctaagtctaagttgtgtcaaggaactt
cacataaaaacagagacactgaaacttatagtggagaaaggtgggggaag
aagcctcaagatatgcatacagggaatatttcttgaacaggaacagccaa
tgacttggtgttgtaagatgaagaatcaacaaattggttctccataattg
caaggccttctcgggtagccattgactctgtttataggacaaaaatacca
ccccaaccgagactgtgtgtaaaagagaagactttcttctatac

gaattcagtggtagaatacttgcctactatatattcaatcatcatcagga
aaaaaatgaataaatcttttcttttgggtccagattactgccaagtattt
taattactgtctctattttgattattgtgtacttatttctggaatatcga
cttggtaattcatcaaaatttaaatgttttttcatatttttaagtatttt
atttttgagattaatataattacataattttcctcttccctttattctct
aaaaccctccaatatgcccttcttttttcattaattagtgttatgtacac
acatgagaatacatattatgcatattcacacacacatacatacacatata
ttcctaatacataggtacaacatgttcagtctggatgttacttgaatatg
tgtttttatggatgataatttggtactgagtagcaaattggtgtgctttt
agaccctaacccatttctccttttttttcagaattcctttgctcatagat
ttttgtatagcgttgaggcctcctgggattttccatgtcgatttgggcat
gcttattagtattgtctttgtttagttcatgttaggcagtcatgttggta
agattttatgcatgtatctttaggtagtcttacagaaaactaccagctcc
tttggcttatacaattttctaccccttcttctacaatgttccctgggcct
tattgtataaatcatatagtagatgaatgtagctctttggggctgagcta
cacaactctgcatttttattggttataagtttctataatagccgccatct
gtttcaaagagaagtttccttgatggagagtaaggcctgtacttacctgt
gggtgtaaatataaattggaatgtagctaggttttatattgttttagtaa
agttatggttgttcttcttggaggttgttctcctagatccatgacttcat
aagccctggatagttgggcttgttttaattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120857918_120858611
seq2: B6Ng01-322N21.g_68_761

seq1  GAATTCAGTGGTAGAATACTTGCCTACTATATATTCAATCATCATCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTAGAATACTTGCCTACTATATATTCAATCATCATCAGGA  50

seq1  AAAAAATGAATAAATCTTTTCTTTTGGGTCCAGATTACTGCCAAGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAATAAATCTTTTCTTTTGGGTCCAGATTACTGCCAAGTATTT  100

seq1  TAATTACTGTCTCTATTTTGATTATTGTGTACTTATTTCTGGAATATCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTGTCTCTATTTTGATTATTGTGTACTTATTTCTGGAATATCGA  150

seq1  CTTGGTAATTCATCAAAATTTAAATGTTTTTTCATATTTTTAAGTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAATTCATCAAAATTTAAATGTTTTTTCATATTTTTAAGTATTTT  200

seq1  ATTTTTGAGATTAATATAATTACATAATTTTCCTCTTCCCTTTATTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGATTAATATAATTACATAATTTTCCTCTTCCCTTTATTCTCT  250

seq1  AAAACCCTCCAATATGCCCTTCTTTTTTCATTAATTAGTGTTATGTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTCCAATATGCCCTTCTTTTTTCATTAATTAGTGTTATGTACAC  300

seq1  ACATGAGAATACATATTATGCATATTCACACACACATACATACACATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAATACATATTATGCATATTCACACACACATACATACACATATA  350

seq1  TTCCTAATACATAGGTACAACATGTTCAGTCTGGATGTTACTTGAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATACATAGGTACAACATGTTCAGTCTGGATGTTACTTGAATATG  400

seq1  TGTTTTTATGGATGATAATTTGGTACTGAGTAGCAAATTGGTGTGCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATGGATGATAATTTGGTACTGAGTAGCAAATTGGTGTGCTTTT  450

seq1  AGACCCTAACCCATTTCTCCTTTTTTTTCAGAATTCCTTTGCTCATAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAACCCATTTCTCCTTTTTTTTCAGAATTCCTTTGCTCATAGAT  500

seq1  TTTTGTATAGCGTTGAGGCCTCCTGGGATTTTCCATGTCGATTTGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATAGCGTTGAGGCCTCCTGGGATTTTCCATGTCGATTTGGGCAT  550

seq1  GCTTATTAGTATTGTCTTTGTTTAGTTCATGTTAGGCAGTCATGTTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTAGTATTGTCTTTGTTTAGTTCATGTTAGGCAGTCATGTTGGTA  600

seq1  AGATTTTATGCATGTATCTTTAGGTAGTCTTACAGAAAACTACCAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATGCATGTATCTTTAGGTAGTCTTACAGAAAACTACCAGCTCC  650

seq1  TTTGGCTTATACAATTTTCTACCCCTTCTTCTACAATGTTCCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTATACAATTTTCTACCCCTTCTTCTACAATGTTCCCT  694


| Home | SequenceCutter | Blast | Download |