BAC Information

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BAC

Clone NameB6Ng01-323I15
Chromosome12 (Build37)
Map Location 81,105,177 - 81,245,729
singlet/doubletdoublet
Overlap geneZfp36l1
Upstream gene6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754
Downstream geneActn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323I15.bB6Ng01-323I15.g
ACCGA112089GA112090
length1,1251,125
definitionB6Ng01-323I15.b B6Ng01-323I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,105,177 - 81,106,321)(81,244,600 - 81,245,729)
sequence
gaattcacattcacaggcttacacacctgggggactactatccctgccta
ctttgttgctgtcacccatcttccagtttccaactctgtcctctctggca
tctcatcccgctccctaacaaaccttccagaggcctggagatacattgcc
tcttccctccgcctcacatcctggctacttcctccctacactttgtttcc
acatcagtggctacccctatctgtcctctgatgcagatgcacagggcctt
gcctttctaatgagtctctgtatctccaaccctgtcttaaagtatttttg
tatgccccagggacatctccacagtgctctgaacactgtcagaccttgga
cagtgcttacgtagttgactgattatccaaaatggattttgagggaacaa
atggatacagagtcatgaggaactatggaaaagttaaatgaagctgtgag
cctgggaccgggcagttccttcttgggggcagtagtttaatgggttttcc
attctaggcaatcccctgatagccctagaatcccacagagacccaaggag
ggaggtggctgggtgaactgtgtgctctgcaatcaagcaagaccataaat
gcagatccaggcaagctaagcgacgttagctttgcagctgcaggtgatga
gaacggtatttataggctcgatgacatgtcagaagtggtgagtcccagag
gctgggactggagctggacatcctgagaccccgatgttctgtttttgttc
tcctccctgtccttccctcctggagcccctggaactttccatgtaatttg
gatgaaagcagaaatcatctgttgtttctcagtccttactcatactaggg
aaggatttaaaaatctgctttgtagaaggtggtttgtaatgagtggaaag
attctattgcctcaaaacggcatttgccgttacgtcaaaccttcttcaga
attttcacattctaggcagagacagaagctattctgtctctgagacccgc
agggacacagggctagatggcactggacagtcctaatggttagatgacac
atctagacagagttctaggagattcaagtcacctgataagaactttattt
gggatctgagatggctggttagtta
gaattccagcactctttagtcagagacaggcaaatctttgggttcaaggc
cagcctgatctgatccacacagtgaggttccaggtaagcaaaaactacac
agtgcgtccttgtctcaagcaaacaacaacaaaacccacagaaagatcca
ttagttagctgggtagtggtggcacaaacttttaagcctagtacttggga
ggcagaggtaagcagatctctgtgagttcaaggccagctctagtgtacag
attgagttccaggacagttagagctacacagatacaccctggttggaaaa
tccaagcaggggagaagatagttatagttttaaatttgctgaggcttaat
ttaggtgtggcctagttggagcctaagaaggcatgcagcaagaagagagt
gacagctgactatgggtctagatgttgtaaagactggtgcctccttccat
acagggctggtgtgaatcgtctggtgtgaagaagtggctggtgtaaagtg
tcgatgggacagtacaggcaaaataaagaaagcttctcattgacccaata
atcataaggacagggtccacgttcctgcctctttcagtacgacagtaact
atggggacaggtgacaagaggcagatgtcccctctgaccggagagagtct
ctcttgtagagtcttggcagcagaagcaggtgcccggaaaacgacacgaa
tttgagattgcggctgagttgaaacccaaggtgtgcgcatttgtctctgc
tccaaagagagtttccctttcatttggggaagtagtaatgctgtatagat
gaagtaggtgactctcgttgacaccatctcattgacaccgtcattattat
caggagagagccaaggtacaaaggctggggctgtgctgaatagctacaag
tgccttgttgtcagaatgatctaatgaggtatttttcactcactcggtga
cattccatatgtgtaacatacatcttgaccataccaccccactccctgcc
ctcagtctccccggaacatcccccggcagatcctctccctgctcatgaca
ctttgtggggttatttccccccatcgagtacattgaatatgtcttaattg
tacactgtgttacgcaccggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81105177_81106321
seq2: B6Ng01-323I15.b_46_1170

seq1  GAATTCACATTCACAGGCTTACACACCTGGGGGACTACTATCCCTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCACAGGCTTACACACCTGGGGGACTACTATCCCTGCCTA  50

seq1  CTTTGTTGCTGTCACCCATCTTCCAGTTTCCAACTCTGTCCTCTCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGCTGTCACCCATCTTCCAGTTTCCAACTCTGTCCTCTCTGGCA  100

seq1  TCTCATCCCGCTCCCTAACAAACCTTCCAGAGGCCTGGAGATACATTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCCGCTCCCTAACAAACCTTCCAGAGGCCTGGAGATACATTGCC  150

seq1  TCTTCCCTCCGCCTCACATCCTGGCTACTTCCTCCCTACACTTTGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCCGCCTCACATCCTGGCTACTTCCTCCCTACACTTTGTTTCC  200

seq1  ACATCAGTGGCTACCCCTATCTGTCCTCTGATGCAGATGCACAGGGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTGGCTACCCCTATCTGTCCTCTGATGCAGATGCACAGGGCCTT  250

seq1  GCCTTTCTAATGAGTCTCTGTATCTCCAACCCTGTCTTAAAGTATTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTAATGAGTCTCTGTATCTCCAACCCTGTCTTAAAGTATTTTTG  300

seq1  TATGCCCCAGGGACATCTCCACAGTGCTCTGAACACTGTCAGACCTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCCAGGGACATCTCCACAGTGCTCTGAACACTGTCAGACCTTGGA  350

seq1  CAGTGCTTACGTAGTTGACTGATTATCCAAAATGGATTTTGAGGGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTACGTAGTTGACTGATTATCCAAAATGGATTTTGAGGGAACAA  400

seq1  ATGGATACAGAGTCATGAGGAACTATGGAAAAGTTAAATGAAGCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACAGAGTCATGAGGAACTATGGAAAAGTTAAATGAAGCTGTGAG  450

seq1  CCTGGGACCGGGCAGTTCCTTCTTGGGGGCAGTAGTTTAATGGGTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACCGGGCAGTTCCTTCTTGGGGGCAGTAGTTTAATGGGTTTTCC  500

seq1  ATTCTAGGCAATCCCCTGATAGCCCTAGAATCCCACAGAGACCCAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGCAATCCCCTGATAGCCCTAGAATCCCACAGAGACCCAAGGAG  550

seq1  GGAGGTGGCTGGGTGAACTGTGTGCTCTGCAATCAAGCAAGACCATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGCTGGGTGAACTGTGTGCTCTGCAATCAAGCAAGACCATAAAT  600

seq1  GCAGATCCAGGCAAGCTAAGCGACGTTAGCTTTGCAGCTGCAGGTGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCAGGCAAGCTAAGCGACGTTAGCTTTGCAGCTGCAGGTGATGA  650

seq1  GAACGGTATTTATAGGCTCGATGACATGTCAGAAGTGGTGAGTCCCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGTATTTATAGGCTCGATGACATGTCAGAAGTGGTGAGTCCCAGAG  700

seq1  GCTGGGACTGGAGCTGGACATCCTGAGACCCCGATGTTCTGTTTTTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACTGGAGCTGGACATCCTGAGACCCCGATGTTCTGTTTTTGTTC  750

seq1  TCCTCCCTGTCCTTCCCTCCTGGAGCCCCTGGAACTTTCCATGTAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGTCCTTCCCTCCTGGAGCCCCTGGAACTTTCCATGTAATTTG  800

seq1  GATGAAAGCAGAAATCATCTGTTGTTTCTCAGTCCTTACTCATACTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGCAGAAATCATCTGTTGTTTCTCAGTCCTTACTCATACTAGGG  850

seq1  AAGGATTTAAAAATCTGCTTTGTAGAAGGGTGGTTTGTAATGAGTGGAAA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGGATTTAAAAATCTGCTTTGTAGAA-GGTGGTTTGTAATGAGTGGAAA  899

seq1  GATTCTATTGCCTCAAAAACGGCATTTGCCGTTACGTCAAAACCTTCTTC  950
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  GATTCTATTGCCTC-AAAACGGCATTTGCCGTTACGTC-AAACCTTCTTC  947

seq1  AGAAATTTTCACAATTCTAGGCAGAGACAGAAGCTATTCTGTCTTCTGAG  1000
      || ||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  AG-AATTTTCAC-ATTCTAGGCAGAGACAGAAGCTATTCTGTC-TCTGAG  994

seq1  ACCCGCAGGGACACAGGGCTAGGATTGGCACTGGACAGTCCTTATTGGTA  1050
      ||||||||||||||||||||||   ||||||||||||||||| || | ||
seq2  ACCCGCAGGGACACAGGGCTAG--ATGGCACTGGACAGTCCTAATGGTTA  1042

seq1  GATGAACACATCTTAGACAAGAAGTTCTA-GAGAATCCAGGTTCACCTGA  1099
      |||| ||||||| ||||||   ||||||| |||| || ||  ||||||||
seq2  GATG-ACACATC-TAGACA--GAGTTCTAGGAGATTCAAG--TCACCTGA  1086

seq1  TAAAGACTTTTATTTGGGGGGTTCTGGAGAGATGGCTGGGTAGTTA  1145
      | ||||  |||||||   ||| |||   ||||||||||| ||||||
seq2  T-AAGAACTTTATTT---GGGATCT---GAGATGGCTGGTTAGTTA  1125

seq1: chr12_81244600_81245729
seq2: B6Ng01-323I15.g_66_1190 (reverse)

seq1  ACACAC--GTGCGT-ACACAGGTGTACAATTTAGGACATATTCAAATTGT  47
      ||||||  |||||| ||||| |||||||| ||| |||||||||||  |||
seq2  ACACACCGGTGCGTAACACA-GTGTACAA-TTAAGACATATTCAA--TGT  46

seq1  ACTCGATGGGGGGGAAATAA-CCCACAAGTGGTCATGAAGCAGGGAGAGG  96
      ||||||| |||||||||||| |||||||   |||||| ||||||||||||
seq2  ACTCGAT-GGGGGGAAATAACCCCACAAAGTGTCATG-AGCAGGGAGAGG  94

seq1  ATCTGCC-GGGGATGTTCCGGGGAGACTGAGGGCAGGGAGTGGGGTGGTT  145
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  ATCTGCCGGGGGATGTTCCGGGGAGACTGAGGGCAGGGAGTGGGGTGG-T  143

seq1  ATGGTCAAGATGTATTGTTTACACATATGGAATTGTCACCGAGTGAGTGA  195
      |||||||||||||||   |||||||||||||| |||||||||||||||||
seq2  ATGGTCAAGATGTAT--GTTACACATATGGAA-TGTCACCGAGTGAGTGA  190

seq1  AAAATACCTCATTAGATCATTCTGACAACAAGGCACTTGTAGCTATTCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCTCATTAGATCATTCTGACAACAAGGCACTTGTAGCTATTCAG  240

seq1  CACAGCCCCAGCCTTTGTACCTTGGCTCTCTCCTGATAATAATGACGGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCCAGCCTTTGTACCTTGGCTCTCTCCTGATAATAATGACGGTG  290

seq1  TCAATGAGATGGTGTCAACGAGAGTCACCTACTTCATCTATACAGCATTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGATGGTGTCAACGAGAGTCACCTACTTCATCTATACAGCATTA  340

seq1  CTACTTCCCCAAATGAAAGGGAAACTCTCTTTGGAGCAGAGACAAATGCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCCCAAATGAAAGGGAAACTCTCTTTGGAGCAGAGACAAATGCG  390

seq1  CACACCTTGGGTTTCAACTCAGCCGCAATCTCAAATTCGTGTCGTTTTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTGGGTTTCAACTCAGCCGCAATCTCAAATTCGTGTCGTTTTCC  440

seq1  GGGCACCTGCTTCTGCTGCCAAGACTCTACAAGAGAGACTCTCTCCGGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTGCTTCTGCTGCCAAGACTCTACAAGAGAGACTCTCTCCGGTC  490

seq1  AGAGGGGACATCTGCCTCTTGTCACCTGTCCCCATAGTTACTGTCGTACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGACATCTGCCTCTTGTCACCTGTCCCCATAGTTACTGTCGTACT  540

seq1  GAAAGAGGCAGGAACGTGGACCCTGTCCTTATGATTATTGGGTCAATGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGCAGGAACGTGGACCCTGTCCTTATGATTATTGGGTCAATGAG  590

seq1  AAGCTTTCTTTATTTTGCCTGTACTGTCCCATCGACACTTTACACCAGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCTTTATTTTGCCTGTACTGTCCCATCGACACTTTACACCAGCC  640

seq1  ACTTCTTCACACCAGACGATTCACACCAGCCCTGTATGGAAGGAGGCACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCACACCAGACGATTCACACCAGCCCTGTATGGAAGGAGGCACC  690

seq1  AGTCTTTACAACATCTAGACCCATAGTCAGCTGTCACTCTCTTCTTGCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTACAACATCTAGACCCATAGTCAGCTGTCACTCTCTTCTTGCTG  740

seq1  CATGCCTTCTTAGGCTCCAACTAGGCCACACCTAAATTAAGCCTCAGCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTCTTAGGCTCCAACTAGGCCACACCTAAATTAAGCCTCAGCAA  790

seq1  ATTTAAAACTATAACTATCTTCTCCCCTGCTTGGATTTTCCAACCAGGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACTATAACTATCTTCTCCCCTGCTTGGATTTTCCAACCAGGGT  840

seq1  GTATCTGTGTAGCTCTAACTGTCCTGGAACTCAATCTGTACACTAGAGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTGTAGCTCTAACTGTCCTGGAACTCAATCTGTACACTAGAGCT  890

seq1  GGCCTTGAACTCACAGAGATCTGCTTACCTCTGCCTCCCAAGTACTAGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAACTCACAGAGATCTGCTTACCTCTGCCTCCCAAGTACTAGGC  940

seq1  TTAAAAGTTTGTGCCACCACTACCCAGCTAACTAATGGATCTTTCTGTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTTGTGCCACCACTACCCAGCTAACTAATGGATCTTTCTGTGG  990

seq1  GTTTTGTTGTTGTTTGCTTGAGACAAGGACGCACTGTGTAGTTTTTGCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGTTGTTTGCTTGAGACAAGGACGCACTGTGTAGTTTTTGCTT  1040

seq1  ACCTGGAACCTCACTGTGTGGATCAGATCAGGCTGGCCTTGAACCCAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAACCTCACTGTGTGGATCAGATCAGGCTGGCCTTGAACCCAAAG  1090

seq1  ATTTGCCTGTCTCTGACTAAAGAGTGCTGGAATTC  1130
      |||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTGTCTCTGACTAAAGAGTGCTGGAATTC  1125