BAC Information

Click to search

BAC

Clone NameB6Ng01-323P17
Chromosome12 (Build37)
Map Location 13,934,544 - 14,097,593
singlet/doubletdoublet
Overlap genenone
Upstream geneMycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323P17.bB6Ng01-323P17.g
ACCGA112417GA112418
length1,1631,027
definitionB6Ng01-323P17.b B6Ng01-323P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,934,544 - 13,935,706)(14,096,567 - 14,097,593)
sequence
gaattctagggctctagatctaagtcatattagacaatgaactctttccc
tccccaagagcacaccctcatttgtccctcatctagcccctgctaaacgt
acctcttccctgtttctgtgcattcatctacctcagatggcccagactcc
tccgagtttatagtgaatcgcttaataaacagaatcatgtgggatttgtt
ccttagtgtctgccttgcttcctaagtgtagcagccttcagcttcatcca
tgctgcctatggaaggatttctttctttttttaacagctgtataatactc
tcttgggtgtacatacatttcttttatccattcgcccactgccagccatt
taatttctatgtcccaaagaattggaatgtagatttcaaattgaaatcaa
cttaatgtaatagtgatgctttactggaaataaatcacaaatcaaaaata
agacattcataagtatgaggaagagtctgtttcttggtttgtttgtttct
ttgatatggggtcttgctttgcagtctggtctagagcctattataaagta
attctctgtgtagtctaggctagcatcaaacccatagtctgcctgcttcc
ttatttttggtgctggggtatgttgtagatgtttctgaattcatagcatt
ggcctgttcttgatttatgatgattcagcccttttatgggttatctgtct
ttgaacttctgtgtgtcctagtgagtcatactgagttttatgtatttgga
gtgagaatgataggctagagacacgcccacctctatgccttttatcccta
agcatgcttaattacatcctatccccagaggcagtgtgaactccaacctg
gagtgaaactagaggtcctgtgctgcaggcttgtataaagggcatatctg
actgattttcagggtgcgcttagagtaagtgggacatgctttgtatacta
gaattgaaggtattctctctagactaactctagcatctggggctcatgaa
cctagagggtgagagtaggattccaatgataagactactactccaggaaa
agtctagtcttgaaggttgaatggagctccttcaggaccaagggtcgcac
cttcaaggtctctttctgaagtgggtattcatgtacgaaactttgaactc
agtcctgacatgt

gaattcacagtcctttctacgctgaatattaaggttagtgagaaacgttg
aacaacaggtcaaatgaagactggggaaattcagagaaaatgtaaaacag
gacccaggacgaagcaggttaaggaagaggaattgattgttctgtatgaa
ttcaggatgtagaacagaaaggtttgtgggtaaaattgatggtatataca
ttttggttcaataaaaaagagaaaatagaatgttacaatggaataaactc
aggctaaaaggaaggcatgggttttttctaaagaaataaagaggactgga
tgatttcatcttagaattgggaccctaggcttcacctgaggtcctttgag
agccccaagggattccaggggtttcagaggttgtaaatgtttgaaaatta
taagtatggatgcacatttatgttgttcagaaaagaaggtttagtgtttc
cctaaaaacactaaaaaaatcaaaaatcccgcattaaaaaccaaatgaca
agtttactaagcacacagcaatcccattaaattccaattctcaaaggact
ttcttatcttggaatgaaggcagagtggctgattctggtaacagctcatc
acccaatattcttcaaattaagggcaataaggaaaaagcgagtgagtttt
ttgggaaatataatcagtggcccaggatctttagaaaagacaatgaaagg
agacaattaaaatcagccttggctgctttttaccttcctgtgtaatctac
acagacagcaacaaaactaaagtcagaccctggttgttgtccaaagtgtt
ctatcattcaagaaaatgatctaaagggatctgcaaccctataggtggaa
caacattatgaactaaccagtaccccgggagctcttgactctagctgcat
atgtatcaaaagatggcctagtcggccatcactggaagagagcccattgg
acttgcaaactttatatgcctcagtacaggggaacaccaaggccaaaagg
ggggagtggggtgggtcaggaagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13934544_13935706
seq2: B6Ng01-323P17.b_47_1209

seq1  GAATTCTAGGGCTCTAGATCTAAGTCATATTAGACAATGAACTCTTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGCTCTAGATCTAAGTCATATTAGACAATGAACTCTTTCCC  50

seq1  TCCCCAAGAGCACACCCTCATTTGTCCCTCATCTAGCCCCTGCTAAACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGAGCACACCCTCATTTGTCCCTCATCTAGCCCCTGCTAAACGT  100

seq1  ACCTCTTCCCTGTTTCTGTGCATTCATCTACCTCAGATGGCCCAGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCCCTGTTTCTGTGCATTCATCTACCTCAGATGGCCCAGACTCC  150

seq1  TCCGAGTTTATAGTGAATCGCTTAATAAACAGAATCATGTGGGATTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTTTATAGTGAATCGCTTAATAAACAGAATCATGTGGGATTTGTT  200

seq1  CCTTAGTGTCTGCCTTGCTTCCTAAGTGTAGCAGCCTTCAGCTTCATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGTCTGCCTTGCTTCCTAAGTGTAGCAGCCTTCAGCTTCATCCA  250

seq1  TGCTGCCTATGGAAGGATTTCTTTCTTTTTTTAACAGCTGTATAATACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTATGGAAGGATTTCTTTCTTTTTTTAACAGCTGTATAATACTC  300

seq1  TCTTGGGTGTACATACATTTCTTTTATCCATTCGCCCACTGCCAGCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTGTACATACATTTCTTTTATCCATTCGCCCACTGCCAGCCATT  350

seq1  TAATTTCTATGTCCCAAAGAATTGGAATGTAGATTTCAAATTGAAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTATGTCCCAAAGAATTGGAATGTAGATTTCAAATTGAAATCAA  400

seq1  CTTAATGTAATAGTGATGCTTTACTGGAAATAAATCACAAATCAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTAATAGTGATGCTTTACTGGAAATAAATCACAAATCAAAAATA  450

seq1  AGACATTCATAAGTATGAGGAAGAGTCTGTTTCTTGGTTTGTTTGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCATAAGTATGAGGAAGAGTCTGTTTCTTGGTTTGTTTGTTTCT  500

seq1  TTGATATGGGGTCTTGCTTTGCAGTCTGGTCTAGAGCCTATTATAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGGGGTCTTGCTTTGCAGTCTGGTCTAGAGCCTATTATAAAGTA  550

seq1  ATTCTCTGTGTAGTCTAGGCTAGCATCAAACCCATAGTCTGCCTGCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTGTAGTCTAGGCTAGCATCAAACCCATAGTCTGCCTGCTTCC  600

seq1  TTATTTTTGGTGCTGGGGTATGTTGTAGATGTTTCTGAATTCATAGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGGTGCTGGGGTATGTTGTAGATGTTTCTGAATTCATAGCATT  650

seq1  GGCCTGTTCTTGATTTATGATGATTCAGCCCTTTTATGGGTTATCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTCTTGATTTATGATGATTCAGCCCTTTTATGGGTTATCTGTCT  700

seq1  TTGAACTTCTGTGTGTCCTAGTGAGTCATACTGAGTTTTATGTATTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTCTGTGTGTCCTAGTGAGTCATACTGAGTTTTATGTATTTGGA  750

seq1  GTGAGAATGATAGGCTAGAGACACGCCCACCTCTATGCCTTTTATCCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATGATAGGCTAGAGACACGCCCACCTCTATGCCTTTTATCCCTA  800

seq1  AGCATGCTTAATTACATCCTATCCCCAGAGGCAGTGTGAACTCCAACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTTAATTACATCCTATCCCCAGAGGCAGTGTGAACTCCAACCTG  850

seq1  GAGTG-AACTAGAGGTCCTGTGCTGCAGGCTTGTATAAAGGGCATATCTG  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAACTAGAGGTCCTGTGCTGCAGGCTTGTATAAAGGGCATATCTG  900

seq1  ACTGATTTTCAGGGTGCGCTTAGAGTAAGTGGGA-ATGCTTTGTATACTA  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGATTTTCAGGGTGCGCTTAGAGTAAGTGGGACATGCTTTGTATACTA  950

seq1  GAATTGAAAGGTATTCTCTCTAGACTAAC-CTAGCATTCTGGGGCTCATT  997
      |||||| |||||||||||||||||||||| |||||| ||||||||||| |
seq2  GAATTG-AAGGTATTCTCTCTAGACTAACTCTAGCA-TCTGGGGCTCA-T  997

seq1  GAAACTAGAGGGTGAGAGTAGGA-TCCAATGATAAGACTAACACTCCAAG  1046
      ||| ||||||||||||||||||| ||||||||||||||||  |||||| |
seq2  GAACCTAGAGGGTGAGAGTAGGATTCCAATGATAAGACTACTACTCCAGG  1047

seq1  AAAAGTCTAG-CCTGAGGGT--GATGGAGCCCCTTCAAGGACAAGGTTCG  1093
      |||||||||| | ||| |||   ||||||| |||||| |  ||||| |||
seq2  AAAAGTCTAGTCTTGAAGGTTGAATGGAGCTCCTTCAGGACCAAGGGTCG  1097

seq1  ACACCTTC-AGGGCTC-TTCTAAAACTTTGGAAATCATGTACAGAATCTT  1141
       ||||||| ||| ||| |||| ||   | || | |||||||| ||| |||
seq2  -CACCTTCAAGGTCTCTTTCTGAA--GTGGGTATTCATGTAC-GAAACTT  1143

seq1  TGAACTCAAGTCCTTGACATGT  1163
      ||||||| ||||| ||||||||
seq2  TGAACTC-AGTCC-TGACATGT  1163


seq1: chr12_14096567_14097593
seq2: B6Ng01-323P17.g_71_1097 (reverse)

seq1  CCCACTCCCCTGCCCA-CCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCT  49
      |||||| ||   |||| ||||||||||| |||||||| ||||||||||||
seq2  CCCACTTCCTGACCCACCCCACTCCCCCCTTTTGGCCTTGGTGTTCCCCT  50

seq1  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTG  99
      |||||| |||||||||||||||||||||||||||| ||||| ||||||||
seq2  GTACTGAGGCATATAAAGTTTGCAAGTCCAATGGG-CTCTC-TTCCAGTG  98

seq1  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  148

seq1  -CCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA  198

seq1  TCCCTTTAGATCATTTTCTTGAATGATAGAACACTTTGGACAACAACCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAGATCATTTTCTTGAATGATAGAACACTTTGGACAACAACCAG  248

seq1  GGTCTGACTTTAGTTTTGTTGCTGTCTGTGTAGATTACACAGGAAGGTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGACTTTAGTTTTGTTGCTGTCTGTGTAGATTACACAGGAAGGTAA  298

seq1  AAAGCAGCCAAGGCTGATTTTAATTGTCTCCTTTCATTGTCTTTTCTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCCAAGGCTGATTTTAATTGTCTCCTTTCATTGTCTTTTCTAAA  348

seq1  GATCCTGGGCCACTGATTATATTTCCCAAAAAACTCACTCGCTTTTTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGGCCACTGATTATATTTCCCAAAAAACTCACTCGCTTTTTCCT  398

seq1  TATTGCCCTTAATTTGAAGAATATTGGGTGATGAGCTGTTACCAGAATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCCTTAATTTGAAGAATATTGGGTGATGAGCTGTTACCAGAATCA  448

seq1  GCCACTCTGCCTTCATTCCAAGATAAGAAAGTCCTTTGAGAATTGGAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTGCCTTCATTCCAAGATAAGAAAGTCCTTTGAGAATTGGAATT  498

seq1  TAATGGGATTGCTGTGTGCTTAGTAAACTTGTCATTTGGTTTTTAATGCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGATTGCTGTGTGCTTAGTAAACTTGTCATTTGGTTTTTAATGCG  548

seq1  GGATTTTTGATTTTTTTAGTGTTTTTAGGGAAACACTAAACCTTCTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGATTTTTTTAGTGTTTTTAGGGAAACACTAAACCTTCTTTTC  598

seq1  TGAACAACATAAATGTGCATCCATACTTATAATTTTCAAACATTTACAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACATAAATGTGCATCCATACTTATAATTTTCAAACATTTACAAC  648

seq1  CTCTGAAACCCCTGGAATCCCTTGGGGCTCTCAAAGGACCTCAGGTGAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACCCCTGGAATCCCTTGGGGCTCTCAAAGGACCTCAGGTGAAG  698

seq1  CCTAGGGTCCCAATTCTAAGATGAAATCATCCAGTCCTCTTTATTTCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGTCCCAATTCTAAGATGAAATCATCCAGTCCTCTTTATTTCTTT  748

seq1  AGAAAAAACCCATGCCTTCCTTTTAGCCTGAGTTTATTCCATTGTAACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACCCATGCCTTCCTTTTAGCCTGAGTTTATTCCATTGTAACAT  798

seq1  TCTATTTTCTCTTTTTTATTGAACCAAAATGTATATACCATCAATTTTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCTCTTTTTTATTGAACCAAAATGTATATACCATCAATTTTAC  848

seq1  CCACAAACCTTTCTGTTCTACATCCTGAATTCATACAGAACAATCAATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACCTTTCTGTTCTACATCCTGAATTCATACAGAACAATCAATTC  898

seq1  CTCTTCCTTAACCTGCTTCGTCCTGGGTCCTGTTTTACATTTTCTCTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTAACCTGCTTCGTCCTGGGTCCTGTTTTACATTTTCTCTGAA  948

seq1  TTTCCCCAGTCTTCATTTGACCTGTTGTTCAACGTTTCTCACTAACCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGTCTTCATTTGACCTGTTGTTCAACGTTTCTCACTAACCTTA  998

seq1  ATATTCAGCGTAGAAAGGACTGTGAATTC  1027
      |||||||||||||||||||||||||||||
seq2  ATATTCAGCGTAGAAAGGACTGTGAATTC  1027


| Home | SequenceCutter | Blast | Download |