BAC Information

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BAC

Clone NameB6Ng01-324H23
Chromosome12 (Build37)
Map Location 119,745,935 - 119,874,731
singlet/doubletdoublet
Overlap geneLOC100042993, LOC668611
Upstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
Downstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324H23.bB6Ng01-324H23.g
ACCGA112795GA112796
length1,1971,113
definitionB6Ng01-324H23.b B6Ng01-324H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,745,935 - 119,747,101)(119,873,645 - 119,874,731)
sequence
gaattcaaatccccaacacttatgtaaaagcttagcatggccatatgtgc
ctttaattccagtgctagggaggcagaggcaggcacatccccagagattt
gatgcacagcctgtatcgctgaaatgacaagcccaggttcagtaagagaa
gaggtctcaaaaaataaggtggagggcacctgaagtggaccgacccatgg
catctgtgtgcacacctgcatacacacctgcattcacacctgcatacata
tgtgcatatttacatacacaccacatacacaattgtacttggttagcaat
catcatcctaactgctcaaggtcaagattctggatgatcaactgatggtt
gctagaaattaaaacaactaatgctgcatcttcttactattctttccttc
ttgtcctatgaggtcagacacgacgtgcttattcaaatcaggttgaagtg
atttggaaataatggcaaacaccgtttttccattattgaaggagatagcc
tgggatggctccagtctccccttctacatctgatgactaggtaattccac
agatcgtgagagcgggtttacctttgaagatctcattaagctttattgac
cttcatttttactcacactgagaggtggtgtgactggatcgcttttactc
acactgagagggcacagtggtctgactggatcttgcaggcccagtgggga
ggcagcctgcataatgatcttttgctgtggctttgtagctttctttttct
ccagtgtgcttactgctgtagcaaatgtccagtgtcccaggttactaagt
gaacggggctattccagtcaggttttcctcttaacagcatgaatcctgaa
accccaaaggctgtggtttccttgagggtgtccttggccactccaggaag
gcaaatcatgctgcatcttctcaccttctccacatcccagactttccaac
ttctgtcttttcttgacacaagaaaagacccctttctcactgaatgaatg
taatctccctctggaaaacaccacattttctgttgtctgggggagtgaag
cgcctgcttcttgcgtcctctcttcttgctctgcctgtacgtttggtggc
acgttcaaaaggccgcagagccagcttcagtcagcatcgaaacctttctc
tttacattgaaggtgacctaagtgtgtacgcctctctgaaggtgagc
gaattcagtagccgccaccttagaaaaaatctaaacatacaaaggataga
gtggaagttgtataccagatccacggaatcaggaattccttgcaagatcc
aggtatcaacaagatataaaagcttcgtgatgagtcttgtgccatgtacc
ctgaatctatggtctaagtatacatgtgaaggggtggagctatgagctgg
gatggagtgaagccagaaggagtagtgctatattttactagtgatggttc
catatgaatgtatacagatccaaaactgcataaggttatggacacactca
ctcaactgagcatgtaaaaaataagttaggtttcagtatggtataccaat
gtgtcacgactgtctaatatcatactacagatagtcgacaactgggttaa
agacactgcaacctatcaccactggtttggcaaccctctttgaatcagtt
atttcaaaacagaggcaacagtagaggctccaagctggaatcattaattt
ggtgagtgtgctttgttttggattttgtgactcacatggccacagagcag
taaatgtagctaaaagtatggatccatgatgcctttcacaaagccttttt
tattcacccacccctggaccacattcctgtgagatgaggctctgtttcta
ggcactcagattcgttgaggtgaggatggattttggttgtttacttggct
ggattcagaaatgccaaggattttaataagaacatctctgactatgtcta
tttgcagagatagttagacaacaaaaggctgtggctcaatgaatttaata
tgttgggtggagctataatttgaatagactaatcagaagacaatatatct
gtggaaagcagggcctagtttagatcaagtaatctcactgaaggcaggtc
ccttggaggctgtcccttgcttcttgctctgcattccttgtcttcaacat
atgagatgtttccgaggcactcctccctgccacggtgggacttgatatct
tctgaaaacaatgaacttaaatttctattcttaagaaagcttatttttgg
gttatttttgtcacactgaacacaaaagcctattatatataggctctaca
gggcttcctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119745935_119747101
seq2: B6Ng01-324H23.b_48_1244

seq1  GAATTCAAATCCCCAACACTTATGTAAAAGCTTAGCATGGCCATATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCCCAACACTTATGTAAAAGCTTAGCATGGCCATATGTGC  50

seq1  CTTTAATTCCAGTGCTAGGGAGGCAGAGGCAGGCACATCCCCAGAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCCAGTGCTAGGGAGGCAGAGGCAGGCACATCCCCAGAGATTT  100

seq1  GATGCACAGCCTGTATCGCTGAAATGACAAGCCCAGGTTCAGTAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACAGCCTGTATCGCTGAAATGACAAGCCCAGGTTCAGTAAGAGAA  150

seq1  GAGGTCTCAAAAAATAAGGTGGAGGGCACCTGAAGTGGACCGACCCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTCAAAAAATAAGGTGGAGGGCACCTGAAGTGGACCGACCCATGG  200

seq1  CATCTGTGTGCACACCTGCATACACACCTGCATTCACACCTGCATACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTGCACACCTGCATACACACCTGCATTCACACCTGCATACATA  250

seq1  TGTGCATATTTACATACACACCACATACACAATTGTACTTGGTTAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATATTTACATACACACCACATACACAATTGTACTTGGTTAGCAAT  300

seq1  CATCATCCTAACTGCTCAAGGTCAAGATTCTGGATGATCAACTGATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCCTAACTGCTCAAGGTCAAGATTCTGGATGATCAACTGATGGTT  350

seq1  GCTAGAAATTAAAACAACTAATGCTGCATCTTCTTACTATTCTTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAATTAAAACAACTAATGCTGCATCTTCTTACTATTCTTTCCTTC  400

seq1  TTGTCCTATGAGGTCAGACACGACGTGCTTATTCAAATCAGGTTGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTATGAGGTCAGACACGACGTGCTTATTCAAATCAGGTTGAAGTG  450

seq1  ATTTGGAAATAATGGCAAACACCGTTTTTCCATTATTGAAGGAGATAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAATAATGGCAAACACCGTTTTTCCATTATTGAAGGAGATAGCC  500

seq1  TGGGATGGCTCCAGTCTCCCCTTCTACATCTGATGACTAGGTAATTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGCTCCAGTCTCCCCTTCTACATCTGATGACTAGGTAATTCCAC  550

seq1  AGATCGTGAGAGCGGGTTTACCTTTGAAGATCTCATTAAGCTTTATTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTGAGAGCGGGTTTACCTTTGAAGATCTCATTAAGCTTTATTGAC  600

seq1  CTTCATTTTTACTCACACTGAGAGGTGGTGTGACTGGATCGCTTTTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTTTACTCACACTGAGAGGTGGTGTGACTGGATCGCTTTTACTC  650

seq1  ACACTGAGAGGGCACAGTGGTCTGACTGGATCTTGCAGGCCCAGTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGAGGGCACAGTGGTCTGACTGGATCTTGCAGGCCCAGTGGGGA  700

seq1  GGCAGCCTGCATAATGATCTTTTGCTGTGGCTTTGTAGCTTTCTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCTGCATAATGATCTTTTGCTGTGGCTTTGTAGCTTTCTTTTTCT  750

seq1  CCAGTGTGCTTACTGCTGTAGCAAATGTCCAGTGTCCCAGGTTACTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCTTACTGCTGTAGCAAATGTCCAGTGTCCCAGGTTACTAAGT  800

seq1  GAACGGGGCTATTCCAGTCAGG-TTTCCTC-TAACAGCATGAATCCTGAA  848
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  GAACGGGGCTATTCCAGTCAGGTTTTCCTCTTAACAGCATGAATCCTGAA  850

seq1  --CCCCAAGGCTGTGGTTTCC-TGAGGGTGTCCTTGGCCACTCCAGGAAG  895
        ||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCCCAAAGGCTGTGGTTTCCTTGAGGGTGTCCTTGGCCACTCCAGGAAG  900

seq1  GCAAATCATGCTGCATCTTCTCCACCTTCTCCACATCCCAGACTTTCC-A  944
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GCAAATCATGCTGCATCTTCT-CACCTTCTCCACATCCCAGACTTTCCAA  949

seq1  CCTCTGTC-TTTCCTGACACAAG-AAAGACCC--TTCTCACTGAATGAAT  990
      | |||||| |||| ||||||||| ||||||||  ||||||||||||||||
seq2  CTTCTGTCTTTTCTTGACACAAGAAAAGACCCCTTTCTCACTGAATGAAT  999

seq1  GTAATCTCCCTCT-GAAAACA-CACA-TTTCTGTTGTCT-GGGGAGTGAA  1036
      ||||||||||||| ||||||| |||| |||||||||||| ||||||||||
seq2  GTAATCTCCCTCTGGAAAACACCACATTTTCTGTTGTCTGGGGGAGTGAA  1049

seq1  GCGCCTGCTTCTTGCGTCC-CTCCTC-TGCTCTGCCTGTACG-TTGGT-G  1082
      ||||||||||||||||||| ||| || ||||||||||||||| ||||| |
seq2  GCGCCTGCTTCTTGCGTCCTCTCTTCTTGCTCTGCCTGTACGTTTGGTGG  1099

seq1  CACG-TCAGAA-GCCGCAGAG-CAGC-TCAG-CAGCA-CGAAACTTTCCT  1126
      |||| ||| || ||||||||| |||| |||| ||||| |||||| || ||
seq2  CACGTTCAAAAGGCCGCAGAGCCAGCTTCAGTCAGCATCGAAACCTTTCT  1149

seq1  GTT--CACTG-AGGTGA-CTAAGTGT---CAGCTC-CTGAGAGGTGAGC  1167
       ||  || || |||||| ||||||||   |  ||| |||| ||||||||
seq2  CTTTACATTGAAGGTGACCTAAGTGTGTACGCCTCTCTGA-AGGTGAGC  1197

seq1: chr12_119873645_119874731
seq2: B6Ng01-324H23.g_68_1180 (reverse)

seq1  AGAAAG--AGCCCTGTAGAGCACTGTAT-TAAT-GGCTTCTGTG-TCATT  45
      ||||||  ||||||||||||| || ||| |||| ||||| |||| ||| |
seq2  AGAAAGGAAGCCCTGTAGAGC-CTATATATAATAGGCTTTTGTGTTCAGT  49

seq1  GTGACAAAAAT-ACCCAAAAATAAGC-TTCTTAAGAATAGGAATTTTAGG  93
      ||||||||||| |||||||||||||| ||||||||||||| ||||| || 
seq2  GTGACAAAAATAACCCAAAAATAAGCTTTCTTAAGAATAGAAATTTAAGT  99

seq1  TCATTG-TTTCAG-AGATTTC-AGT-CCACCGTGGCAGGGA-GAGTGCCT  138
      |||||| |||||| |||| || ||| ||||||||||||||| ||||||||
seq2  TCATTGTTTTCAGAAGATATCAAGTCCCACCGTGGCAGGGAGGAGTGCCT  149

seq1  CGG-AACATCTCATATTGTGAAGAC-AGGAA-GCAGAGCA--GAGCAAGG  183
      ||| ||||||||||||  ||||||| ||||| ||||||||   |||||||
seq2  CGGAAACATCTCATATGTTGAAGACAAGGAATGCAGAGCAAGAAGCAAGG  199

seq1  GACAGCCTCCAA-GGACCTGCC-TCAGTGAG-CTACTTGATCT-AACTAG  229
      |||||||||||| ||||||||| ||||||||  |||||||||| ||||||
seq2  GACAGCCTCCAAGGGACCTGCCTTCAGTGAGATTACTTGATCTAAACTAG  249

seq1  GCCCTGCTTTCCACAGATCTATTGTCTTCTGA-TAGTCTATTC-AATTAT  277
      |||||||||||||||||| ||||||||||||| |||||||||| ||||||
seq2  GCCCTGCTTTCCACAGATATATTGTCTTCTGATTAGTCTATTCAAATTAT  299

seq1  AGCTCCA-CCAACATATTAAATTCATTGAGCCACAGCC-TTTGTTGTCTA  325
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  AGCTCCACCCAACATATTAAATTCATTGAGCCACAGCCTTTTGTTGTCTA  349

seq1  ACTATCTCTGCAAATAGACATAGTCAGAGATGTTCTTATTAAAATCCTTG  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCTGCAAATAGACATAGTCAGAGATGTTCTTATTAAAATCCTTG  399

seq1  GCATTTCTGAATCCAGCCAAGTAAACAACCAAAATCCATCCTCACCTCAA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGAATCCAGCCAAGTAAACAACCAAAATCCATCCTCACCTCAA  449

seq1  CGAATCTGAGTGCCTAGAAACAGAGCCTCATCTCACAGGAATGTGGTCCA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCTGAGTGCCTAGAAACAGAGCCTCATCTCACAGGAATGTGGTCCA  499

seq1  GGGGTGGGTGAATAAAAAAGGCTTTGTGAAAGGCATCATGGATCCATACT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGTGAATAAAAAAGGCTTTGTGAAAGGCATCATGGATCCATACT  549

seq1  TTTAGCTACATTTACTGCTCTGTGGCCATGTGAGTCACAAAATCCAAAAC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTACATTTACTGCTCTGTGGCCATGTGAGTCACAAAATCCAAAAC  599

seq1  AAAGCACACTCACCAAATTAATGATTCCAGCTTGGAGCCTCTACTGTTGC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACACTCACCAAATTAATGATTCCAGCTTGGAGCCTCTACTGTTGC  649

seq1  CTCTGTTTTGAAATAACTGATTCAAAGAGGGTTGCCAAACCAGTGGTGAT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTGAAATAACTGATTCAAAGAGGGTTGCCAAACCAGTGGTGAT  699

seq1  AGGTTGCAGTGTCTTTAACCCAGTTGTCGACTATCTGTAGTATGATATTA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCAGTGTCTTTAACCCAGTTGTCGACTATCTGTAGTATGATATTA  749

seq1  GACAGTCGTGACACATTGGTATACCATACTGAAACCTAACTTATTTTTTA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCGTGACACATTGGTATACCATACTGAAACCTAACTTATTTTTTA  799

seq1  CATGCTCAGTTGAGTGAGTGTGTCCATAACCTTATGCAGTTTTGGATCTG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCAGTTGAGTGAGTGTGTCCATAACCTTATGCAGTTTTGGATCTG  849

seq1  TATACATTCATATGGAACCATCACTAGTAAAATATAGCACTACTCCTTCT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTCATATGGAACCATCACTAGTAAAATATAGCACTACTCCTTCT  899

seq1  GGCTTCACTCCATCCCAGCTCATAGCTCCACCCCTTCACATGTATACTTA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACTCCATCCCAGCTCATAGCTCCACCCCTTCACATGTATACTTA  949

seq1  GACCATAGATTCAGGGTACATGGCACAAGACTCATCACGAAGCTTTTATA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGATTCAGGGTACATGGCACAAGACTCATCACGAAGCTTTTATA  999

seq1  TCTTGTTGATACCTGGATCTTGCAAGGAATTCCTGATTCCGTGGATCTGG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGATACCTGGATCTTGCAAGGAATTCCTGATTCCGTGGATCTGG  1049

seq1  TATACAACTTCCACTCTATCCTTTGTATGTTTAGATTTTTTCTAAGGT--  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TATACAACTTCCACTCTATCCTTTGTATGTTTAGATTTTTTCTAAGGTGG  1099

seq1  CCTCTACTGAATTC  1087
      |  |||||||||||
seq2  CGGCTACTGAATTC  1113