BAC Information

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BAC

Clone NameB6Ng01-325M01
Chromosome12 (Build37)13 (Build37)
Map Location 108,660,213 - 108,661,36413,908,801 - 13,908,930
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325M01.bB6Ng01-325M01.g
ACCGA113730GA113731
length1,165322
definitionB6Ng01-325M01.b B6Ng01-325M01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,660,213 - 108,661,364)(13,908,801 - 13,908,930)
sequence
gaattctgcggtcaagtgcaaagagcaaaacacagatgatgaacctcagg
tcccaaccaaaagaggaacaaggagtgctgaagagcttgctccaatccca
agatccagcaaggcaggtggattcacagaggtctttacaggaagtgatgg
tgggtacctgaatcccgtgcacaaactgtttagaaatgttctgtttctaa
gccaagagagcccttctttctcaaacagggctgcagcatccattcacctg
gcacatcaaccatactaccataccgtgtggccctcctgatggaccccagt
gagatggtcactgatccatggatgagggatgccacagcatcagtggggcc
tggtcactgcaacggactctgacttatgtgttggggtgggatatggattt
caatgtggcccctggtttgtccctttagatgcttggtcatgggagagctg
tagtgggtgaacaccccgggatccacggctcttcaggggtacagtgtgtg
ctgagagcttctttcttttcagcaagattataagtacctacccgagggcc
aggcacaccattgcatcatgggtgagtacagaacttaactgtgtttcaca
gcagaatatcattatcaggaccaagccagccttccctccccattcccttg
catgcatgtatgtctacatgtctgtggcctgcatgcctctgtgcctgact
gagtgcctttctacgtacatatgttcataagtgcatgtatgggggcgggg
caagggagcacgtatagatgtggagatcagaggcaaaccttagtaaatgg
gtttctgccttcccacctactgaagaacaaataagtccatgtcttgtttt
ttctccgctgtcaggctagcccgcctgtgaggttcttaggattcccctgt
ctctacctttccacctcccatcggagctcaggaatgacacaggccacatt
accatgcccagctttatgcagtattctagcttgatcacactgctgtgctg
aaaccccacgaccaaaaagtacttgggggagaaaaattgtttcttccatt
cttcgctccatgtcgcccaccggcctatccactgacggaaagtcagggca
gaatttcagccaaaatccgaggaagaaaccctctgaacacgagattttct
ctctgggatgatgca

tttccccaggaagagactgggtgtgtaattgctgtgctgatgaggacatt
ggtggaacccgtggggctcactggcctaccatccaagttgcttggtaagc
tcaggctaatgatagatcagctcttaaaaagcaaggtgaaggccatcgga
agaacactgcctgaggttgtcttctgacttctacagacacaagcactcac
tcatctggacacacacacacacacacacacacacacacacacacacacac
acagagagagagagagagagagagagagagagagagagagaaagagaggg
agaaagagagagagagagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108660213_108661364
seq2: B6Ng01-325M01.b_47_1210

seq1  GAATTCTGCGGTCAAGTGCAAAGAGCAAAACACAGATGATGAACCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGGTCAAGTGCAAAGAGCAAAACACAGATGATGAACCTCAGG  50

seq1  TCCCAACCAAAAGAGGAACAAGGAGTGCTGAAGAGCTTGCTCCAATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCAAAAGAGGAACAAGGAGTGCTGAAGAGCTTGCTCCAATCCCA  100

seq1  AGATCCAGCAAGGCAGGTGGATTCACAGAGGTCTTTACAGGAAGTGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGCAAGGCAGGTGGATTCACAGAGGTCTTTACAGGAAGTGATGG  150

seq1  TGGGTACCTGAATCCCGTGCACAAACTGTTTAGAAATGTTCTGTTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACCTGAATCCCGTGCACAAACTGTTTAGAAATGTTCTGTTTCTAA  200

seq1  GCCAAGAGAGCCCTTCTTTCTCAAACAGGGCTGCAGCATCCATTCACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGAGCCCTTCTTTCTCAAACAGGGCTGCAGCATCCATTCACCTG  250

seq1  GCACATCAACCATACTACCATACCGTGTGGCCCTCCTGATGGACCCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCAACCATACTACCATACCGTGTGGCCCTCCTGATGGACCCCAGT  300

seq1  GAGATGGTCACTGATCCATGGATGAGGGATGCCACAGCATCAGTGGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTCACTGATCCATGGATGAGGGATGCCACAGCATCAGTGGGGCC  350

seq1  TGGTCACTGCAACGGACTCTGACTTATGTGTTGGGGTGGGATATGGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTGCAACGGACTCTGACTTATGTGTTGGGGTGGGATATGGATTT  400

seq1  CAATGTGGCCCCTGGTTTGTCCCTTTAGATGCTTGGTCATGGGAGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGCCCCTGGTTTGTCCCTTTAGATGCTTGGTCATGGGAGAGCTG  450

seq1  TAGTGGGTGAACACCCCGGGATCCACGGCTCTTCAGGGGTACAGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTGAACACCCCGGGATCCACGGCTCTTCAGGGGTACAGTGTGTG  500

seq1  CTGAGAGCTTCTTTCTTTTCAGCAAGATTATAAGTACCTACCCGAGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCTTCTTTCTTTTCAGCAAGATTATAAGTACCTACCCGAGGGCC  550

seq1  AGGCACACCATTGCATCATGGGTGAGTACAGAACTTAACTGTGTTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACCATTGCATCATGGGTGAGTACAGAACTTAACTGTGTTTCACA  600

seq1  GCAGAATATCATTATCAGGACCAAGCCAGCCTTCCCTCCCCATTCCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATATCATTATCAGGACCAAGCCAGCCTTCCCTCCCCATTCCCTTG  650

seq1  CATGCATGTATGTCTACATGTCTGTGGCCTGCATGCCTCTGTGCCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGTATGTCTACATGTCTGTGGCCTGCATGCCTCTGTGCCTGACT  700

seq1  GAGTGCCTTTCTACGTACATATGTTCATAAGTGCATGTATGGGGGCGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTTTCTACGTACATATGTTCATAAGTGCATGTATGGGGGCGGGG  750

seq1  CAAGGGAGCACGTATAGATGTGGAGATCAGAGGCAAACCTTAGT-AATGG  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAGGGAGCACGTATAGATGTGGAGATCAGAGGCAAACCTTAGTAAATGG  800

seq1  GTTTCTGCCTT-CCACCTACTGAAGAACAAATAAGTCCATGTCTTG-TTT  847
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  GTTTCTGCCTTCCCACCTACTGAAGAACAAATAAGTCCATGTCTTGTTTT  850

seq1  TTCTCCGCTGTCAGGCTAGCCCGCCTGTGAGGTTCTTAGGATTCCCCTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGCTGTCAGGCTAGCCCGCCTGTGAGGTTCTTAGGATTCCCCTGT  900

seq1  CTCTACC-TTCCACCTCCCCATCGGAGCTCAGGAATGACACAGG-CACAT  945
      ||||||| |||||||| ||||||||||||||||||||||||||| |||||
seq2  CTCTACCTTTCCACCT-CCCATCGGAGCTCAGGAATGACACAGGCCACAT  949

seq1  TACCATGCCCAGCTTTATGCAGTATTCTAGCTTGATCACCACTGCTGTGC  995
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACCATGCCCAGCTTTATGCAGTATTCTAGCTTGATCA-CACTGCTGTGC  998

seq1  TGAAACCCCACGACC-AAAAGTAACTTGGGGAG-AAAATTGTTTCTTCCA  1043
      ||||||||||||||| |||||||  | |||||| ||||||||||||||||
seq2  TGAAACCCCACGACCAAAAAGTACTTGGGGGAGAAAAATTGTTTCTTCCA  1048

seq1  -TCTTCTGCTCCCATGTCGCCCA-CAGCCCAT-CACTGA-GGGAAGTCAG  1089
       ||||| ||| |||||||||||| | ||| || |||||| || |||||||
seq2  TTCTTC-GCT-CCATGTCGCCCACCGGCCTATCCACTGACGGAAAGTCAG  1096

seq1  GGCAGGAATTCAAGCAGAAACCGAGGAGGAACACCTCTG---ACCAGA-T  1135
      ||||| | ||||  || || ||||||| |||  ||||||   || ||| |
seq2  GGCAGAATTTCAGCCAAAATCCGAGGAAGAAACCCTCTGAACACGAGATT  1146

seq1  TTCTCTCT-GGATGATGC  1152
      |||||||| |||||||||
seq2  TTCTCTCTGGGATGATGC  1164


seq1: chr13_13908801_13908930
seq2: B6Ng01-325M01.g_270_394 (reverse)

seq1  TCTCTCTCTGTCTCTCTGTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTC  50
      ||||||||| ||||||| |||| |||||| ||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTTTCTCCCTCTCTTTCTCTCTCTCTCTCTCTCTC  50

seq1  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTAGTTTAGCTATGAGTGA  130
      |||||||||||   ||  ||  ||||||||
seq2  TGTGTGTGTGT---GTCCAG--ATGAGTGA  125


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