BAC Information

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BAC

Clone NameB6Ng01-326H06
Chromosome12 (Build37)4 (Build37)
Map Location 60,840,570 - 60,840,62558,638,503 - 58,639,651
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326H06.bB6Ng01-326H06.g
ACCGA114259GA114260
length1,0191,136
definitionB6Ng01-326H06.b B6Ng01-326H06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,840,570 - 60,840,625)(58,638,503 - 58,639,651)
sequence
gaattcctggtctttacaagacttttaatatgaagggatactgaattttg
tcaaatgcttttcagcatctaatgaaatgatcatgtgttttttttttcct
ttgagtttgtttatgtcatggataacattgatggatttccatatattgaa
ccaaccctgcatccctgcgatgaagtccacttgattgtggtgaatgatca
ttttgatgtgttcttgaatttgattagcaagaattttactgagtattttt
gcatcaatgttcacaagggagatgtgtctgaagttctctttcattgtttg
gtttttgtgtggtttaggtataagcatagttgtggctccatagaaagaat
tgggtagtgttccttctgtttctattttgtggaatagtttgaagagtatt
gggattaggtcttctttaaaggtctgatacaattctccactaaactcatc
tggttctgggctttctttggttgggagactactcatgactgtttctattt
ctttaggggagatgggactgtttagatgttttatctgatcctgttttaac
tttggcacctggtaagtgtgtggaaaagtgtccatttcatccagattttc
caattttgttgagtataagcttttgtagtagaaagtgataatttttaaaa
tttccacggtttctgttattatgtttcccttttcatttctgattttgtta
atttggatactgtctctgtgccctctggttagtctggctaagggtttatc
tatcttgttgattttctcaaagaaccagctcctagtttggttgattcttt
gtttagttctttttgtttctacttggttgatttcagacctgagtttaagt
atttcctgccatctactcttcttgggtgtatttgcttctctcttcttctt
cttcttcttctctcttcttctctctctctctctctctctctcttctttat
agatattttcttcatttaccttcaaatgccatccaaagtcccctatactc
tcccccacctgccctgctc

gaattccagatgagatctgtgatttaaaaaaatagtgaattcatacacat
atgaagaaatcacaaaactctaaatataattctattatatttagagtgct
gcatttgggagtgaagagcatggtgtcagagacttgagtcatgtatggaa
acttcatgaccctggctagttcctccagatgaaagaagaggcagctgcca
gttgttgagttaataaattatttcatatcaaaaggaaattaaatctggcg
ttagatcacatagaccaaccaccaaaagaagaccaacaaaaccttagaaa
taaaactgaaactaaggttgcaggaagcacaaaggtatacagcagagaag
aataaatataaggcagaatcattgtgacatgatagtgaaggagcaggctg
gccagctcaggtcttagagtacttgtcaagcacgcatgaagccctgggtt
agaactgatctgcagcacaaaaaccaggcatgatgacacacagacctgta
agcctggcactcaggatgtggaggcaggagcgtcagcaggtcaaggttag
cctgggctacatgagagcctgactcaagctattgaatcctccaagactca
ttttctcaactgatgaaaggacttcaataatacttatgcaggatatgaat
aaataccctattgctatgtatgtaggatataaaagtattatctggccctt
gcataacctattaaagtgatgaccaacttatcaatacataaaggaagacc
tcaattttacttctcagttgacttctagtccattaaagtaagtgagatgc
actcaaggtagatcaatgcttcacattcacacatgagcgtgtgcttagac
tacatgagactctgggttcaatccctagaactaagttaaaaaaataagac
tctatcgaaggatatgggaaatgaaaaaattaaaagagatatccctttaa
acctcccttaaaccttccttaaaatatctgatttgtgggggaaataggtt
gcatctacatgcatagctagaatatagtcctcatagactctcaggcgagt
attagtgaatcaattttatcaatgtagagccacagaattaccttccattg
aaaattctcattgtggaaaaaaacttagcataattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60840570_60840625
seq2: B6Ng01-326H06.b_987_1037 (reverse)

seq1  GGGGACTTTTGGAATAGCATTTGAAATGTAAATGAAGAAAATACCTAATT  50
      |||||||||  | || ||||||| || |||||||||||||||| |||  |
seq2  GGGGACTTT--GGATGGCATTTG-AAGGTAAATGAAGAAAATATCTA--T  45

seq1  AAAGAA  56
      ||||||
seq2  AAAGAA  51


seq1: chr4_58638503_58639651
seq2: B6Ng01-326H06.g_65_1200

seq1  GAATTCCAGATGAGATCTGTGATTTAAAAAAATAGTGAATTCATACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGAGATCTGTGATTTAAAAAAATAGTGAATTCATACACAT  50

seq1  ATGAAGAAATCACAAAACTCTAAATATAATTCTATTATATTTAGAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAATCACAAAACTCTAAATATAATTCTATTATATTTAGAGTGCT  100

seq1  GCATTTGGGAGTGAAGAGCATGGTGTCAGAGACTTGAGTCATGTATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGGAGTGAAGAGCATGGTGTCAGAGACTTGAGTCATGTATGGAA  150

seq1  ACTTCATGACCCTGGCTAGTTCCTCCAGATGAAAGAAGAGGCAGCTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGACCCTGGCTAGTTCCTCCAGATGAAAGAAGAGGCAGCTGCCA  200

seq1  GTTGTTGAGTTAATAAATTATTTCATATCAAAAGGAAATTAAATCTGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGAGTTAATAAATTATTTCATATCAAAAGGAAATTAAATCTGGCG  250

seq1  TTAGATCACATAGACCAACCACCAAAAGAAGACCAACAAAACCTTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCACATAGACCAACCACCAAAAGAAGACCAACAAAACCTTAGAAA  300

seq1  TAAAACTGAAACTAAGGTTGCAGGAAGCACAAAGGTATACAGCAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAACTAAGGTTGCAGGAAGCACAAAGGTATACAGCAGAGAAG  350

seq1  AATAAATATAAGGCAGAATCATTGTGACATGATAGTGAAGGAGCAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATAAGGCAGAATCATTGTGACATGATAGTGAAGGAGCAGGCTG  400

seq1  GCCAGCTCAGGTCTTAGAGTACTTGTCAAGCACGCATGAAGCCCTGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCAGGTCTTAGAGTACTTGTCAAGCACGCATGAAGCCCTGGGTT  450

seq1  AGAACTGATCTGCAGCACAAAAACCAGGCATGATGACACACAGACCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGATCTGCAGCACAAAAACCAGGCATGATGACACACAGACCTGTA  500

seq1  AGCCTGGCACTCAGGATGTGGAGGCAGGAGCGTCAGCAGGTCAAGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCACTCAGGATGTGGAGGCAGGAGCGTCAGCAGGTCAAGGTTAG  550

seq1  CCTGGGCTACATGAGAGCCTGACTCAAGCTATTGAATCCTCCAAGACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTACATGAGAGCCTGACTCAAGCTATTGAATCCTCCAAGACTCA  600

seq1  TTTTCTCAACTGATGAAAGGACTTCAATAATACTTATGCAGGATATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAACTGATGAAAGGACTTCAATAATACTTATGCAGGATATGAAT  650

seq1  AAATACCCTATTGCTATGTATGTAGGATATAAAAGTATTATCTGGCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCCTATTGCTATGTATGTAGGATATAAAAGTATTATCTGGCCCTT  700

seq1  GCATAACCTATTAAAGTGATGACCAACTTATCAATACATAAAGGAAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACCTATTAAAGTGATGACCAACTTATCAATACATAAAGGAAGACC  750

seq1  TCAATTTTACTTCTCAGTTGACTTCTAGTCCATTAAAGTAAGTGAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTACTTCTCAGTTGACTTCTAGTCCATTAAAGTAAGTGAGATGC  800

seq1  ACTCAAGGTAGATCAATGCTTCACATTCACACATGAGCGTGTGCTTAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGTAGATCAATGCTTCACATTCACACATGAGCGTGTGCTTAGAC  850

seq1  TACATGAGACTCTGGGTTCAATCCCTAGAACTAAGTTAAAAAAATAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACATGAGACTCTGGGTTCAATCCCTAGAACTAAGTTAAAAAAAT-AAGA  899

seq1  CTCTATCGAAGGATATGGAAAATGAAAAAAATTAAAAGAGATATCCCTTT  950
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  CTCTATCGAAGGATATGGGAAATG-AAAAAATTAAAAGAGATATCCCTTT  948

seq1  AAAACCTCCCTTTAAACCTCCCTTTAAAAATATCTGATTTGTGGGGGGAA  1000
       ||||||||| |||||||| ||||  |||||||||||||||| |||||||
seq2  -AAACCTCCC-TTAAACCTTCCTT--AAAATATCTGATTTGT-GGGGGAA  993

seq1  ATAGGTTGCATCCTACATGCATAGCTAGAATATAGTCCTCATAGACTCTC  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTGCAT-CTACATGCATAGCTAGAATATAGTCCTCATAGACTCTC  1042

seq1  AGGCGAGTATTAGTGAAATCATTTTATCAATGGAGAAGCACAGAA-TACC  1099
      |||||||||||||||||   |||||||||||| |||  ||||||| ||||
seq2  AGGCGAGTATTAGTGAATCAATTTTATCAATGTAGAGCCACAGAATTACC  1092

seq1  TCCCTTTAAAAATATCTCATTTGTGGGGAAAAAAAAACTTAGAATAATTC  1149
      | || || ||||| ||||| ||||||    |||||||||||| |||||||
seq2  TTCCATTGAAAAT-TCTCA-TTGTGG----AAAAAAACTTAGCATAATTC  1136


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