BAC Information

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BAC

Clone NameB6Ng01-327B07
Chromosome12 (Build37)
Map Location 104,259,864 - 104,368,845
singlet/doubletdoublet
Overlap gene9030205A07Rik, LOC667269
Upstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c
Downstream genePrima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327B07.bB6Ng01-327B07.g
ACCGA114719GA114720
length1,1051,087
definitionB6Ng01-327B07.b B6Ng01-327B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,367,732 - 104,368,845)(104,259,864 - 104,260,949)
sequence
gaattcaggagcaggctctccatgaagaaagacatcagcatggagcagat
cccctggagctgtgcagctcaagcatctaagatgagtctccaagtgacaa
cgtgaaatagcagcatgctgtgctagatagtaactataaatctgagttct
tcaagcagacaaaaaggcggaacagcaatgatcagtagataacccacgtc
tcatcaagaaacacgtaacttggtcctggaatcaaagatgtctgatttct
cctcagaaagagtaactaccgagagaatggtagttctagtgatctaagaa
tataaaccttagatgcctagcctgaggggcaatgctgtgtggcccaagag
ggaaatgctgtcgaagttcgtgcttccacactatagaccacctctccagg
taaagtttacaccaagtgtatttctgagaaacaaatgcttacaaacacaa
gcgccaactctgaaaatgcctgcgccttccagagatcccagctgagaaca
caagccttgccatcatattatcggccatttctgagccactttcccgccca
gggacatctaagggtgccgttaacaaggatgtccgtaaagatgttgcaca
atcacatataggcagacgcatagcagagaagcaaaagcacaaagcttaaa
tataatttcccacgactcttgctcattgacgggcacactagccaaatgct
aaaacggcaagtctaacagagcaggaaaaaaaaatcgacataagatttat
ggagacatgtccacaatttcactaggaagtcaagattacagccagaggat
ctagaaggattcgggcatttttgtggcttccaaacaggcattacctaata
ggggcgtgttcttatagtagccccagtgaagttgtttttctccatgacaa
cacagaaagcacgctgcagtatttatggaagtcatctatcaaagagaata
gtttgggtgactgggccattggctcttacaggacaacattagctgaacca
tggcttgctaaaatctgctactgagtgaaactgaaagcatgtatgagaga
tagaaatataaaagggaagcacagacttcagccactttcgtcacaacgac
ccaca
gaattctctactgctttggttataccgggtgagtggtcgttattttgatt
tgaggctgctgagtgaattcacgtctgtcccttcctcctgcaggaccttt
tgtatgtgattgcctacgggccttcacaggtgaagcctccagcagtacag
atgcttttccactattggcccaacctgaagcctcccggagcaataagcga
gtacaggggcttacagtacacaggtaaggagagcagagctctgggggccc
gtgttcatctccctcatgccactgagcctcaccttatgcaacaccatatt
agatggttgacattgtcctttaggagtctgggtttcaaagtcatgggtca
gtccatgctattaggggacgttgatcacttgagcccaggaaatttgggga
gccgtcctaggcaacctagaatgatgccatctcttaataatatctcttaa
gataatcaaatgtggtgctgcaagcagacgggaatctcagcacttgagag
gtggaggcaggaggatcagaagtgccaagtcagtcttgactacaaatcgg
gtttgaaggcatcatgaactgtaagagaacccatttcaaaacaaacaaaa
cacaacctgaagaaaaataaggagaaaaaaaaatcccaaacccctcaaaa
aagcccttagttataccaactaaaatatttatgacttcatagcagattgc
ctatgcccctacctcagttactatccaaaaggcctacatcttacctactg
ctgaaggtttatttcctatcaaaccagaagtgatgagagcaaggctgggt
attaacatctcttagtggaagcctcagctgcctaattctgttcttgtgag
aggcctggccatgttttcagtgtcaccagaagactctcatcatgacaatg
aaacagtcacatttaaatacaatgacacagttgggcatgggtggcctact
cttaggacctcacaccctgtgggctgacactaaagtctctagagttcaag
ctagccctgggccacagagtggattatagacagcctgagctattatgaaa
acctgaaaatggaattagttggccataatatttacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104367732_104368845
seq2: B6Ng01-327B07.b_46_1150 (reverse)

seq1  TGTGGGTCGTTTGTGACGAAAGGTTGCTGAAGTCTGTGGCTTTCCTTTTT  50
      ||||||||| ||||||||||| || |||||||||||||   |||| ||||
seq2  TGTGGGTCG-TTGTGACGAAA-GTGGCTGAAGTCTGTG--CTTCCCTTTT  46

seq1  ATATTTCTTATCTTCTCATACATTGCTTTCAGTTTCCACTTCAGTAGCAG  100
      ||||||| |||| ||||||||| |||||||||||| ||| ||||||||||
seq2  ATATTTC-TATC-TCTCATACA-TGCTTTCAGTTT-CAC-TCAGTAGCAG  91

seq1  ATTTTAGCAAGCCATGGGTTCAGCTAATGTTGTCCTGTAAGAGCCAATGG  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCAAGCCAT-GGTTCAGCTAATGTTGTCCTGTAAGAGCCAATGG  140

seq1  -CCAGTCACCCAAACTATTCTCTTTGATAGATGACTTCCATAAATACTGC  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCACCCAAACTATTCTCTTTGATAGATGACTTCCATAAATACTGC  190

seq1  AGCGTGCTTTCTGTGTTGTCATGGAGAAAAACAACTTCACTGGGGCTACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGCTTTCTGTGTTGTCATGGAGAAAAACAACTTCACTGGGGCTACT  240

seq1  ATAAGAACACGCCCCTATTAGGTAATGCCTGTTTGGAAGCCACAAAAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACACGCCCCTATTAGGTAATGCCTGTTTGGAAGCCACAAAAATG  290

seq1  CCCGAATCCTTCTAGATCCTCTGGCTGTAATCTTGACTTCCTAGTGAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAATCCTTCTAGATCCTCTGGCTGTAATCTTGACTTCCTAGTGAAAT  340

seq1  TGTGGACATGTCTCCATAAATCTTATGTCGATTTTTTTTTCCTGCTCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACATGTCTCCATAAATCTTATGTCGATTTTTTTTTCCTGCTCTGT  390

seq1  TAGACTTGCCGTTTTAGCATTTGGCTAGTGTGCCCGTCAATGAGCAAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTGCCGTTTTAGCATTTGGCTAGTGTGCCCGTCAATGAGCAAGAG  440

seq1  TCGTGGGAAATTATATTTAAGCTTTGTGCTTTTGCTTCTCTGCTATGCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGAAATTATATTTAAGCTTTGTGCTTTTGCTTCTCTGCTATGCGT  490

seq1  CTGCCTATATGTGATTGTGCAACATCTTTACGGACATCCTTGTTAACGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTATATGTGATTGTGCAACATCTTTACGGACATCCTTGTTAACGGC  540

seq1  ACCCTTAGATGTCCCTGGGCGGGAAAGTGGCTCAGAAATGGCCGATAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAGATGTCCCTGGGCGGGAAAGTGGCTCAGAAATGGCCGATAATA  590

seq1  TGATGGCAAGGCTTGTGTTCTCAGCTGGGATCTCTGGAAGGCGCAGGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCAAGGCTTGTGTTCTCAGCTGGGATCTCTGGAAGGCGCAGGCAT  640

seq1  TTTCAGAGTTGGCGCTTGTGTTTGTAAGCATTTGTTTCTCAGAAATACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGTTGGCGCTTGTGTTTGTAAGCATTTGTTTCTCAGAAATACAC  690

seq1  TTGGTGTAAACTTTACCTGGAGAGGTGGTCTATAGTGTGGAAGCACGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTAAACTTTACCTGGAGAGGTGGTCTATAGTGTGGAAGCACGAAC  740

seq1  TTCGACAGCATTTCCCTCTTGGGCCACACAGCATTGCCCCTCAGGCTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACAGCATTTCCCTCTTGGGCCACACAGCATTGCCCCTCAGGCTAGG  790

seq1  CATCTAAGGTTTATATTCTTAGATCACTAGAACTACCATTCTCTCGGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGGTTTATATTCTTAGATCACTAGAACTACCATTCTCTCGGTAG  840

seq1  TTACTCTTTCTGAGGAGAAATCAGACATCTTTGATTCCAGGACCAAGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTCTGAGGAGAAATCAGACATCTTTGATTCCAGGACCAAGTTA  890

seq1  CGTGTTTCTTGATGAGACGTGGGTTATCTACTGATCATTGCTGTTCCGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTCTTGATGAGACGTGGGTTATCTACTGATCATTGCTGTTCCGCC  940

seq1  TTTTTGTCTGCTTGAAGAACTCAGATTTATAGTTACTATCTAGCACAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGCTTGAAGAACTCAGATTTATAGTTACTATCTAGCACAGCA  990

seq1  TGCTGCTATTTCACGTTGTCACTTGGAGACTCATCTTAGATGCTTGAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTATTTCACGTTGTCACTTGGAGACTCATCTTAGATGCTTGAGCT  1040

seq1  GCACAGCTCCAGGGGATCTGCTCCATGCTGATGTCTTTCTTCATGGAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTCCAGGGGATCTGCTCCATGCTGATGTCTTTCTTCATGGAGAG  1090

seq1  CCTGCTCCTGAATTC  1114
      |||||||||||||||
seq2  CCTGCTCCTGAATTC  1105

seq1: chr12_104259864_104260949
seq2: B6Ng01-327B07.g_67_1153

seq1  GAATTCTCTACTGCTTTGGTTATACCGGGTGAGTGGTCGTTATTTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGCTTTGGTTATACCGGGTGAGTGGTCGTTATTTTGATT  50

seq1  TGAGGCTGCTGAGTGAATTCACGTCTGTCCCTTCCTCCTGCAGGACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGCTGAGTGAATTCACGTCTGTCCCTTCCTCCTGCAGGACCTTT  100

seq1  TGTATGTGATTGCCTACGGGCCTTCACAGGTGAAGCCTCCAGCAGTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGATTGCCTACGGGCCTTCACAGGTGAAGCCTCCAGCAGTACAG  150

seq1  ATGCTTTTCCACTATTGGCCCAACCTGAAGCCTCCCGGAGCAATAAGCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTCCACTATTGGCCCAACCTGAAGCCTCCCGGAGCAATAAGCGA  200

seq1  GTACAGGGGCTTACAGTACACAGGTAAGGAGAGCAGAGCTCTGGGGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGGCTTACAGTACACAGGTAAGGAGAGCAGAGCTCTGGGGGCCC  250

seq1  GTGTTCATCTCCCTCATGCCACTGAGCCTCACCTTATGCAACACCATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATCTCCCTCATGCCACTGAGCCTCACCTTATGCAACACCATATT  300

seq1  AGATGGTTGACATTGTCCTTTAGGAGTCTGGGTTTCAAAGTCATGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGACATTGTCCTTTAGGAGTCTGGGTTTCAAAGTCATGGGTCA  350

seq1  GTCCATGCTATTAGGGGACGTTGATCACTTGAGCCCAGGAAATTTGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCTATTAGGGGACGTTGATCACTTGAGCCCAGGAAATTTGGGGA  400

seq1  GCCGTCCTAGGCAACCTAGAATGATGCCATCTCTTAATAATATCTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCCTAGGCAACCTAGAATGATGCCATCTCTTAATAATATCTCTTAA  450

seq1  GATAATCAAATGTGGTGCTGCAAGCAGACGGGAATCTCAGCACTTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCAAATGTGGTGCTGCAAGCAGACGGGAATCTCAGCACTTGAGAG  500

seq1  GTGGAGGCAGGAGGATCAGAAGTGCCAAGTCAGTCTTGACTACAAATCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCAGGAGGATCAGAAGTGCCAAGTCAGTCTTGACTACAAATCGG  550

seq1  GTTTGAAGGCATCATGAACTGTAAGAGAACCCATTTCAAAACAAACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGGCATCATGAACTGTAAGAGAACCCATTTCAAAACAAACAAAA  600

seq1  CACAACCTGAAGAAAAATAAGGAGAAAAAAAAATCCCAAACCCCTCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTGAAGAAAAATAAGGAGAAAAAAAAATCCCAAACCCCTCAAAA  650

seq1  AAGCCCTTAGTTATACCAACTAAAATATTTATGACTTCATAGCAGATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTAGTTATACCAACTAAAATATTTATGACTTCATAGCAGATTGC  700

seq1  CTATGCCCCTACCTCAGTTACTATCCAAAAGGCCTACATCTTACCTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCCTACCTCAGTTACTATCCAAAAGGCCTACATCTTACCTACTG  750

seq1  CTGAAGGTTTATTTCCTATCAAACCAGAAGTGATGAGAGCAAGGCTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTTTATTTCCTATCAAACCAGAAGTGATGAGAGCAAGGCTGGGT  800

seq1  ATTAACATCTCTTAGTGGAAGCCTCAGCTGCCTAATTCTGTTCTTGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATCTCTTAGTGGAAGCCTCAGCTGCCTAATTCTGTTCTTGTGAG  850

seq1  AGGCCTGGCCATGTTTTCAGTGTCACCAGAAGACTCTCATCATGACAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGCCATGTTTTCAGTGTCACCAGAAGACTCTCATCATGACAATG  900

seq1  AAACAGTCACA-TTAAATACAATGACACAGTTGGGCAT-GGTGGCCTACT  948
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  AAACAGTCACATTTAAATACAATGACACAGTTGGGCATGGGTGGCCTACT  950

seq1  CTTAGGACCTCAACACCCTGTGGGCTGACACTAAAGTCTCTAGAGTTCAA  998
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACCTC-ACACCCTGTGGGCTGACACTAAAGTCTCTAGAGTTCAA  999

seq1  GGCTAG-CCTGGGCCACAGAGTGGATTATAAGACAGCCTGAGCTA-TATG  1046
       ||||| |||||||||||||||||||||| ||||||||||||||| ||||
seq2  -GCTAGCCCTGGGCCACAGAGTGGATTAT-AGACAGCCTGAGCTATTATG  1047

seq1  AAAACCTTGAAAAAATGGAAATAGT--GGCAT-ATATTTACCA  1086
      |||||||    ||||||||| ||||  | ||| ||||||||||
seq2  AAAACCT---GAAAATGGAATTAGTTGGCCATAATATTTACCA  1087