BAC Information

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BAC

Clone NameB6Ng01-327C10
Chromosome12 (Build37)
Map Location 96,222,896 - 96,224,085
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633639, LOC217786
Downstream geneLOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327C10.bB6Ng01-327C10.g
ACCGA114773GA114774
length1,1711,179
definitionB6Ng01-327C10.b B6Ng01-327C10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatttttgatgtgggtggtgtttgtgatttgtggatggtgctat
acagagtctggtattcctggtcactataagaaagcaaaattagcaagcta
gagtaagcaagccaggtagcaacactcatctatggcctctgcagcagcct
aagtctccaggtaagtgttctggttgagtttctgtccagacttccttcag
tgacaaacgatgatatggaagcataagccactaacccctttccttcctaa
gttatttttgatcacggtgtttcatcaaagcaatggtagatctaactaaa
gtccaacagtttcatgctttgcatttcaaatactaattgtaatgggatat
ggctgatcagtagagtatatgaaaccttggttcaattacaagtactaaaa
ctttacaaaactatgtgagtttataagagcattatggtatggagctagtg
agtttaaaaatacttattattacttataatacttaccaactaattttata
ttaatcctgaagaatgaaccctaatgaccgtgtctatgaccccatgtcct
atagttttgaaatcaaattatcagatgctcctttaaaaattactcaataa
aattataagctgtaaaagtatggagaggtttcaaacgtcataaaaataga
agattaaagtaaacagtattaagtttaacatttttcttttagctttttta
tttcctatgttagagtgatttgcttgcatgcattttgtgaaccacgtatg
tatattttgtcattggaggataggaaaaacatggcggattccatggtcct
ggagttatagatggttatgagtcaagaacggaccccgattctctacaaag
ggcatcaagggcacttaccaagtgagctgccgctccactctcaagtgaca
tcaacattaatatcgcttttagactaataattccacaatgttctaggtgt
tactgtgttctttacttcatcttattttaacactccttgccctttacata
taaacatcctgcaatgatttatttatatgtagaggcttatgtgttagcat
gaaaaaaggggggaatctttacttttaatcaatcttatactgtttctagt
ttagacctccttagcatgtgccacgagcttaaagctataccactgttgtt
gatctgacttgcatttataaa

gaattctttatgagaaaacacacagccacactatcctaaaatctagagac
ggcaacagaaaccaaggaacaaaacactaccccaaatgacaaggtcaggt
atcagcacctagaattataatcttcccaaacctggatagatgtctagatg
tcatctagaaaacatgaaccataagagccaggataatatgtttatattag
aaatcagcaaccccatagagcaggctttgagcattacaacatagctgaaa
cacaagcaagaagacttttaaaaggttttaagaatgtggttgcagtcctt
aaggaggaaatgaagaattgtctaatagaaatgtatgaaaacacagatag
tggaagaaaactaataaaatagtttaaacctaaaagtggaaatagaatca
acacagacaacacaaactgagggaaatatgacaaaaaaaattagaaactc
aacaaaaatctcaccgacagaatacaaaagattaaagataaaaatctcag
aatttgaagacacaacagaagacacagatatctcagcaaagaaaatgtcc
cacctaaaaattacctgacatgaaacatccaggatacctgagaaaatatg
agcaaaccaggaccttgggtaaaacaaatattgcttctctaaaataaata
aatatgagtgtacaataacatgactccaagtgcccttctcttatactcct
tacacacctgtgcattgctcaagcatcatcagagaagctacttttcggag
cagacagggacagatacagagaagtatttgtatacttctctgtacagcca
gaagttatgcagaattagagaatttggaacagtcagggctaaagtagatg
ttgcatccaatttctaacttcagggtcaccaaaccccgaggaagatgagg
aatagtgtgccagagccaagggattaaagacatcaagagaagaaggcccc
tttatcaataggatcaatgctcaagtgaaattcacaagagaccaaagtag
catgcatgggatctgcaccaaagtcctctgtgcatatagtatggcttcca
gttagtgtttatgatgtctctgagtggtggtggagaaataggtgggcctc
ctacctcctgtgcatcccatacatctgattttggattttttgattctgaa
tctggtttatttttggtttttacaacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96222896_96224085
seq2: B6Ng01-327C10.b_46_1216 (reverse)

seq1  TTTATAAAATGCAAAGTCAGATTTCAAAACAACAGTTGTGTTAAATTAAG  50
      ||||| |||||| |||||||||     ||||||||| || |       ||
seq2  TTTAT-AAATGC-AAGTCAGAT----CAACAACAGTGGTAT-------AG  37

seq1  CTTTAAACCTCTGTGGCCACATGCCTAGGA-GTCTAAACTAGAAACAGTA  99
      |||| || ||| |||| |||||||  |||| |||||||||||||||||||
seq2  CTTT-AAGCTC-GTGG-CACATGCTAAGGAGGTCTAAACTAGAAACAGTA  84

seq1  TAAAGATTGATTAAAAGTAAAGATTTCCCCCCTTTTTTCATGCTAACACA  149
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  T-AAGATTGATTAAAAGTAAAGA-TTCCCCCCTTTTTTCATGCTAACACA  132

seq1  TAAGCCTCTACATAATAAATAAATCATTGCAGGATGTTTATATGTAAAAG  199
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TAAGCCTCTACAT-ATAAATAAATCATTGCAGGATGTTTATATGT-AAAG  180

seq1  GGCAAGGAGTGTTAAAATAAGATGAAGTAAAGAACACAGTAACACCCTAG  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCAAGGAGTGTTAAAATAAGATGAAGTAAAGAACACAGTAACA-CCTAG  229

seq1  AACATTGTGGAATTATTAGTCTAAAAGCGATATTAATGTTGATGTCACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTGGAATTATTAGTCTAAAAGCGATATTAATGTTGATGTCACTT  279

seq1  GAGAGTGGAGCGGCAGCTCACTTGGTAAGTGCCCTTGATGCCC-TTGTAG  348
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGAGTGGAGCGGCAGCTCACTTGGTAAGTGCCCTTGATGCCCTTTGTAG  329

seq1  AGAATCGGGGTCCGTTCTTGACTCATAACCATCTATAACTCCAGGACCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGGGGTCCGTTCTTGACTCATAACCATCTATAACTCCAGGACCAT  379

seq1  GGAATCCGCCATGTTTTTCCTATCCTCCAATGACAAAATATACATACGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCGCCATGTTTTTCCTATCCTCCAATGACAAAATATACATACGTG  429

seq1  GTTCACAAAATGCATGCAAGCAAATCACTCTAACATAGGAAATAAAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAAATGCATGCAAGCAAATCACTCTAACATAGGAAATAAAAAAG  479

seq1  CTAAAAGAAAAATGTTAAACTTAATACTGTTTACTTTAATCTTCTATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAAAAATGTTAAACTTAATACTGTTTACTTTAATCTTCTATTTT  529

seq1  TATGACGTTTGAAACCTCTCCATACTTTTACAGCTTATAATTTTATTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACGTTTGAAACCTCTCCATACTTTTACAGCTTATAATTTTATTGAG  579

seq1  TAATTTTTAAAGGAGCATCTGATAATTTGATTTCAAAACTATAGGACATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAAGGAGCATCTGATAATTTGATTTCAAAACTATAGGACATG  629

seq1  GGGTCATAGACACGGTCATTAGGGTTCATTCTTCAGGATTAATATAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATAGACACGGTCATTAGGGTTCATTCTTCAGGATTAATATAAAAT  679

seq1  TAGTTGGTAAGTATTATAAGTAATAATAAGTATTTTTAAACTCACTAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTAAGTATTATAAGTAATAATAAGTATTTTTAAACTCACTAGCT  729

seq1  CCATACCATAATGCTCTTATAAACTCACATAGTTTTGTAAAGTTTTAGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCATAATGCTCTTATAAACTCACATAGTTTTGTAAAGTTTTAGTA  779

seq1  CTTGTAATTGAACCAAGGTTTCATATACTCTACTGATCAGCCATATCCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATTGAACCAAGGTTTCATATACTCTACTGATCAGCCATATCCCA  829

seq1  TTACAATTAGTATTTGAAATGCAAAGCATGAAACTGTTGGACTTTAGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTAGTATTTGAAATGCAAAGCATGAAACTGTTGGACTTTAGTTA  879

seq1  GATCTACCATTGCTTTGATGAAACACCGTGATCAAAAATAACTTAGGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACCATTGCTTTGATGAAACACCGTGATCAAAAATAACTTAGGAAG  929

seq1  GAAAGGGGTTAGTGGCTTATGCTTCCATATCATCGTTTGTCACTGAAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGTTAGTGGCTTATGCTTCCATATCATCGTTTGTCACTGAAGGA  979

seq1  AGTCTGGACAGAAACTCAACCAGAACACTTACCTGGAGACTTAGGCTGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGACAGAAACTCAACCAGAACACTTACCTGGAGACTTAGGCTGCT  1029

seq1  GCAGAGGCCATAGATGAGTGTTGCTACCTGGCTTGCTTACTCTAGCTTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCATAGATGAGTGTTGCTACCTGGCTTGCTTACTCTAGCTTGC  1079

seq1  TAATTTTGCTTTCTTATAGTGACCAGGAATACCAGACTCTGTATAGCACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCTTTCTTATAGTGACCAGGAATACCAGACTCTGTATAGCACC  1129

seq1  ATCCACAAATCACAAACACCACCCACATCAAAAATTGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAAATCACAAACACCACCCACATCAAAAATTGAATTC  1171


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