BAC Information

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BAC

Clone NameB6Ng01-330C01
Chromosome12 (Build37)
Map Location 112,816,730 - 112,950,368
singlet/doubletdoublet
Overlap geneMark3, Ckb, 6720458F09Rik, Bag5
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5
Downstream gene2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330C01.bB6Ng01-330C01.g
ACCGA116893GA116894
length1,0231,112
definitionB6Ng01-330C01.b B6Ng01-330C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,816,730 - 112,817,748)(112,949,237 - 112,950,368)
sequence
gaattcacttgcctctgcctcccaagtgttgagattaaatttgtggacca
cttcatcctagccttttaagaagctctggcttcttttttttttaagattt
tatttatttgatgcatgtgagtacactgtagctgtacagatggttgtgag
ccttcatgtggttgttggaaattgaattttttaggacctctgcttgctct
ggtcaatctcgctcgctccagtcagccctggttgctcagtcccaaagatt
tatttattatacataagtgcactgtagctgacttcagacccaccagaaga
gggcatcagatctcattatgggtggttgtgagcatcatgtggttgctggg
atttgaactcaggagctttggaagagcagtcagtgctcttacccactgag
ccatctcgccagcctgaagctctggcttttatctgcagtgtaaatataaa
tcaagaaacataatttgcagtgatattagttatttccaccttgtatacta
tttgttcttaagtgtttgatttccatgttactgctcacctatgaatagga
atataaaagttatagctcagaaaaaacagttaaaattctggggccagaag
atggttgtgtctagtgttctgggactggaatttcaggtggttgtgagacc
cggtgtgggacctgggaactcaaacctgtgtctggaacaccccttaatca
tttagccacctctccagcccaaaagcaggaggctttttaaagataaagtt
taccttttgtggtatgttctataattgacttgcaaagggatccattagta
aatcctgtttttttttttgttttttgtgtttttttaaaaagatttattta
ttatatgtaagtacactgtagctgtcttcagacactccagaaagaggagt
catatcttccttacaaatggttgtgagccaccgtgttggttgctggaatt
tgaacctcagaccttcagaagagcagtcgggtgctctttacctcgctgag
caatctcactagccccagttaat
tagttccctttcctctgtatccccgacgctaggattgtagggatacacca
gcacaccggtgagcttgctttgttttgttcctgtccagctgttttcagga
gagggagttgacatgtcacatcttccctttcctcaagcaaccttttacac
ctttgacgaaaccttttgtgtattttggtgcatgcccaggtgccagagtt
tggcctccctgcccgcccaccatcatttccttggtgtcctttgactttgg
cttttgaagtggggcttcccatggtcctgaaggtcctcggttaggctaac
ctgggctggccagtgaatcacgagatccatctatcgccgtctccccggca
ctggcttgcctggcttttctgttttacttcatgggcgttggcgcttcgcc
tgcatggatgtctgtgcatcactgtgtgcctggtgcctctgaagacagaa
agggaatcagatgccctgggactggggttacctgtgtggtcatgcactgt
catgtgagtgctggtaatcaaacccaggtcctctagccagcacctttaac
cactgagccctctctccagctccgccccagcttttttttttccacatgtg
ttctggaattccagcttggacacttgatgaaaaattatctccacagcccg
aatgagcccttttaacaagtgtactaagaaggagtgtttagagtgggttc
ttgtcctgcagagactaatacgttatcattcttgctatctttcagtgctt
gtgaaactgaacacagaagtatggatatgggaaaccaacacccctccatt
agtaggcttcaggagatccagcgggaagtaaaggctatagagccgcaagt
ggtcggcttcagcggcctgtcggatgacaagaactacaagaggctggaga
ggattctgaccaaacaactttttgaaattgactctgtgatacgaagaaag
gagatatccagcaagctatgaagcggccgcacagagactagacgtcttcc
tcatggagttgagcagatgccaccacccacaccgcatcgatccagatatc
tttagagcttcagccttgtgagacagattgtgccttacagccggagcact
ttgtgtgactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112816730_112817748
seq2: B6Ng01-330C01.b_46_1068

seq1  GAATTCACTTGCCTCTGCCTCCCAAGTGTTGAGATTAAATTTGTGGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCCTCTGCCTCCCAAGTGTTGAGATTAAATTTGTGGACCA  50

seq1  CTTCATCCTAGCCTTTTAAGAAGCTCTGGCTTCTTTTTTTTTTAAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCTAGCCTTTTAAGAAGCTCTGGCTTCTTTTTTTTTTAAGATTT  100

seq1  TATTTATTTGATGCATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGATGCATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAG  150

seq1  CCTTCATGTGGTTGTTGGAAATTGAATTTTTTAGGACCTCTGCTTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTGGTTGTTGGAAATTGAATTTTTTAGGACCTCTGCTTGCTCT  200

seq1  GGTCAATCTCGCTCGCTCCAGTCAGCCCTGGTTGCTCAGTCCCAAAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATCTCGCTCGCTCCAGTCAGCCCTGGTTGCTCAGTCCCAAAGATT  250

seq1  TATTTATTATACATAAGTGCACTGTAGCTGACTTCAGACCCACCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATACATAAGTGCACTGTAGCTGACTTCAGACCCACCAGAAGA  300

seq1  GGGCATCAGATCTCATTATGGGTGGTTGTGAGCATCATGTGGTTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAGATCTCATTATGGGTGGTTGTGAGCATCATGTGGTTGCTGGG  350

seq1  ATTTGAACTCAGGAGCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTCAGGAGCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTGAG  400

seq1  CCATCTCGCCAGCCTGAAGCTCTGGCTTTTATCTGCAGTGTAAATATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCGCCAGCCTGAAGCTCTGGCTTTTATCTGCAGTGTAAATATAAA  450

seq1  TCAAGAAACATAATTTGCAGTGATATTAGTTATTTCCACCTTGTATACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAACATAATTTGCAGTGATATTAGTTATTTCCACCTTGTATACTA  500

seq1  TTTGTTCTTAAGTGTTTGATTTCCATGTTACTGCTCACCTATGAATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTAAGTGTTTGATTTCCATGTTACTGCTCACCTATGAATAGGA  550

seq1  ATATAAAAGTTATAGCTCAGAAAAAACAGTTAAAATTCTGGGGCCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGTTATAGCTCAGAAAAAACAGTTAAAATTCTGGGGCCAGAAG  600

seq1  ATGGTTGTGTCTAGTGTTCTGGGACTGGAATTTCAGGTGGTTGTGAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGTCTAGTGTTCTGGGACTGGAATTTCAGGTGGTTGTGAGACC  650

seq1  CGGTGTGGGACCTGGGAACTCAAACCTGTGTCTGGAACACCCCTTAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGGGACCTGGGAACTCAAACCTGTGTCTGGAACACCCCTTAATCA  700

seq1  TTTAGCCACCTCTCCAGCCCAAAAGCAGGAGGCTTTTTAAAGATAAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCACCTCTCCAGCCCAAAAGCAGGAGGCTTTTTAAAGATAAAGTT  750

seq1  TACCTTTTGTGGTATGTTCTATAATTGACTTGCAAAGGGATCCATTAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTGTGGTATGTTCTATAATTGACTTGCAAAGGGATCCATTAGTA  800

seq1  AATCCTG-TTTTTTTTTTGTTTTTTGTGTTTTTTTTAAAAAGATTTATTT  849
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AATCCTGTTTTTTTTTTTGTTTTTTGTG-TTTTTTTAAAAAGATTTATTT  849

seq1  ATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAG  899
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  ATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAAGAGGAG  899

seq1  TCATATC-TCCTTACAAATGGTTGTGAGCCACCGTG-TGGTTGCTGGAAT  947
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  TCATATCTTCCTTACAAATGGTTGTGAGCCACCGTGTTGGTTGCTGGAAT  949

seq1  TTGAA-CTCAGGACCTTCAGAAGAGCAGTCGGGTGCTCTT--ACTCGCTG  994
      ||||| |||| |||||||||||||||||||||||||||||   |||||||
seq2  TTGAACCTCA-GACCTTCAGAAGAGCAGTCGGGTGCTCTTTACCTCGCTG  998

seq1  AGCCATCTCACTAGCCCCAGTAAAT  1019
      ||| ||||||||||||||||| |||
seq2  AGCAATCTCACTAGCCCCAGTTAAT  1023

seq1: chr12_112949237_112950368
seq2: B6Ng01-330C01.g_75_1186 (reverse)

seq1  TCAGTCACAC-AGTTGCCTCCGCTGTAAAAGGGCACAATCTTGTCTTTCA  49
      |||||||||| |  |||  | |||||||   ||||||||| ||||  |||
seq2  TCAGTCACACAAAGTGCTCCGGCTGTAA---GGCACAATC-TGTC--TCA  44

seq1  CAAGGGCCTGAGCCTCCTTAAAGATATTCTGGATTTCGATGCGGTGTGGG  99
      |||||  ||||  |||  |||||||| ||||||  |||||||||||||||
seq2  CAAGG--CTGAAGCTC--TAAAGATA-TCTGGA--TCGATGCGGTGTGGG  87

seq1  TGGTTGGCATTCTGCTCCAACTCCTTGAGG-AGACGTTCTGTCTCCTGTG  148
      ||| ||||| |||||| ||||||| ||||| ||||||   |||| |||||
seq2  TGG-TGGCA-TCTGCT-CAACTCCATGAGGAAGACGTCTAGTCT-CTGTG  133

seq1  CCGCCCGCTTCCTAGCTTGCTGGATATCTCCTTTTCCTTCCGTATCCACA  198
       || ||||||| ||||||||||||||||||||||  ||| ||||| ||||
seq2  -CGGCCGCTTCATAGCTTGCTGGATATCTCCTTT--CTT-CGTAT-CACA  178

seq1  GAGTCAATTTCAAAAAGTTGTTTGGTCAGAATCCTCTCCAGCCTCTTGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATTTCAAAAAGTTGTTTGGTCAGAATCCTCTCCAGCCTCTTGTA  228

seq1  GTTCTTGTCATCCGACAGGCCGCTGAAGCCGACCACTTGCGGCTCTATAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTCATCCGACAGGCCGCTGAAGCCGACCACTTGCGGCTCTATAG  278

seq1  CCTTTACTTCCCGCTGGATCTCCTGAAGCCTACTAATGGAGGGGTGTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTTCCCGCTGGATCTCCTGAAGCCTACTAATGGAGGGGTGTTGG  328

seq1  TTTCCCATATCCATACTTCTGTGTTCAGTTTCACAAGCACTGAAAGATAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATATCCATACTTCTGTGTTCAGTTTCACAAGCACTGAAAGATAG  378

seq1  CAAGAATGATAACGTATTAGTCTCTGCAGGACAAGAACCCACTCTAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGATAACGTATTAGTCTCTGCAGGACAAGAACCCACTCTAAACA  428

seq1  CTCCTTCTTAGTACACTTGTTAAAAGGGCTCATTCGGGCTGTGGAGATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTTAGTACACTTGTTAAAAGGGCTCATTCGGGCTGTGGAGATAA  478

seq1  TTTTTCATCAAGTGTCCAAGCTGGAATTCCAGAACACATGTGGAAAAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCAAGTGTCCAAGCTGGAATTCCAGAACACATGTGGAAAAAAA  528

seq1  AAAGCTGGGGCGGAGCTGGAGAGAGGGCTCAGTGGTTAAAGGTGCTGGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGGGCGGAGCTGGAGAGAGGGCTCAGTGGTTAAAGGTGCTGGCT  578

seq1  AGAGGACCTGGGTTTGATTACCAGCACTCACATGACAGTGCATGACCACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCTGGGTTTGATTACCAGCACTCACATGACAGTGCATGACCACA  628

seq1  CAGGTAACCCCAGTCCCAGGGCATCTGATTCCCTTTCTGTCTTCAGAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAACCCCAGTCCCAGGGCATCTGATTCCCTTTCTGTCTTCAGAGGC  678

seq1  ACCAGGCACACAGTGATGCACAGACATCCATGCAGGCGAAGCGCCAACGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCACACAGTGATGCACAGACATCCATGCAGGCGAAGCGCCAACGC  728

seq1  CCATGAAGTAAAACAGAAAAGCCAGGCAAGCCAGTGCCGGGGAGACGGCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGTAAAACAGAAAAGCCAGGCAAGCCAGTGCCGGGGAGACGGCG  778

seq1  ATAGATGGATCTCGTGATTCACTGGCCAGCCCAGGTTAGCCTAACCGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGATCTCGTGATTCACTGGCCAGCCCAGGTTAGCCTAACCGAGG  828

seq1  ACCTTCAGGACCATGGGAAGCCCCACTTCAAAAGCCAAAGTCAAAGGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGGACCATGGGAAGCCCCACTTCAAAAGCCAAAGTCAAAGGACA  878

seq1  CCAAGGAAATGATGGTGGGCGGGCAGGGAGGCCAAACTCTGGCACCTGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAATGATGGTGGGCGGGCAGGGAGGCCAAACTCTGGCACCTGGG  928

seq1  CATGCACCAAAATACACAAAAGGTTTCGTCAAAGGTGTAAAAGGTTGCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACCAAAATACACAAAAGGTTTCGTCAAAGGTGTAAAAGGTTGCTT  978

seq1  GAGGAAAGGGAAGATGTGACATGTCAACTCCCTCTCCTGAAAACAGCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGGAAGATGTGACATGTCAACTCCCTCTCCTGAAAACAGCTGG  1028

seq1  ACAGGAACAAAACAAAGCAAGCTCACCGGTGTGCTGGTGTATCCCTACAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACAAAACAAAGCAAGCTCACCGGTGTGCTGGTGTATCCCTACAA  1078

seq1  TCCTAGCGTCGGGGATACAGAGGAAAGGGAACTA  1132
      ||||||||||||||||||||||||||||||||||
seq2  TCCTAGCGTCGGGGATACAGAGGAAAGGGAACTA  1112