BAC Information

Click to search

BAC

Clone NameB6Ng01-331C13
Chromosome12 (Build37)
Map Location 86,199,758 - 86,336,168
singlet/doubletdoublet
Overlap geneLtbp2, 1110018G07Rik, Fcf1
Upstream geneLOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2
Downstream geneYlpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C13.bB6Ng01-331C13.g
ACCGA117607GA117608
length1,210436
definitionB6Ng01-331C13.b B6Ng01-331C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,334,981 - 86,336,168)(86,199,758 - 86,200,199)
sequence
gaattctgggaaaggaaggacagaaggaaggaaagaaggaaggaagggga
gagaaaaaccatgcttaatttgaagactcttaactgtatcagcatgtcaa
tttgaagatgtgaccttgctcttttttcctagcaaccagatcattacctg
tcttgggtaactatgagtagtagatgcggggctagggattccttctttca
gtgtcttattgaagcagcatagaaatacataaaattgcatgtcataagtt
gtattagttagggtttttctgctgtgaacagacaccatgaccaaggcaac
tcttataaaaaaacatttaactggggctgggttacaggttcagaggctaa
catccaggcaggtatggtacaggaagagctgagagttcaacatcttcatc
tgaaggctgctagcagaatactgacttctaggcagctagaaagaggatct
taaacaccttctccaacaaggtcacacctccaccaactgggccacaccta
ctccaacagggccacaccttctaatagtgccactccctaggccgagcata
tacaaactgtgggaagccacatgtgccgttgcagagtggcactgactact
gctggccaccacgcataagtttggacaaacaaccaatgtgtacatatgca
gtaaagttttttgcaaaaacactgcctggcccgggcatgataattaggct
ttgagagtataaccaatcagatgtgagacatgcaaatgaggtatgataat
gaggctctgtgaggtacagagagagagagtagccaatcagatgaggaaca
tgcaaatgaggcatagtgcataaccaatccgggtgtgagacacgcctctc
ctaggcctatataagcagcaccagttctgggctcagggtctcttcgcctc
tgcaatcaagctctcccaataaacgtgtgcagaaaggatcctgttgcagc
gtcgttcttgctggtcgagtccggcgcgcgcaagacaaaccatcacaaca
agtataaaacataatgagttttccacacccagcattattttgtcccagaa
tcaaggaaagaagcccatgtgttatctgatgaaacttggtccaaggggaa
acaataccacatcttacctcagccacagagagagggaagctccacataga
agactcaaagggttgtggattcacgtaagttcattccaatgtagatttta
ttagagttac
cattctcgtgtaggtgtttgattggtccaacgaacagctcacggggaatg
ggaaatcagaagggaaactggatacatcatctccgctgtctgttacatca
tcacagatgaaagtcatacgacttccagagcagccagctgtgttgataga
taaacaccttcctgggaagatgaccgttcccagctggctgagggagggtc
tgagcttcggaccagatctcatcagcctgttttgtatatatcaccagact
gcagtgtctggtttgttctgagccaatcacatgtattatgagactggatc
atgaactcctctttttctcttttacaaaggcacccaaaatgatccactat
ggtggcctcaattgcctagctaagagaaggaaagttctgacagtttttac
tggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86334981_86336168
seq2: B6Ng01-331C13.b_49_1258 (reverse)

seq1  GTAACTCTAATAAAA-CT-CATTTGATTGGACTTTGGTGGTATCCACA--  46
      ||||||||||||||| || |||| || || ||||  || | |||||||  
seq2  GTAACTCTAATAAAATCTACATTGGAATGAACTTACGT-GAATCCACAAC  49

seq1  -CTTTG-GTC-TCT-TGTGG-GCT---CCCTCTCTGT-GCTGAG--TAGA  85
       ||||| ||| ||| ||||| |||   | |||||||| ||||||   |||
seq2  CCTTTGAGTCTTCTATGTGGAGCTTCCCTCTCTCTGTGGCTGAGGTAAGA  99

seq1  TGT-GTATTGTTTCCCTTTGGGACAAGTTCCATCAGATAACACATGG--C  132
      ||| |||||||||||| ||||  |||||| |||||||||||||||||   
seq2  TGTGGTATTGTTTCCCCTTGGACCAAGTTTCATCAGATAACACATGGGCT  149

seq1  TCTTT-CTTGA-TCTGGGACAAA--TATGCTTGGGTTGTGAAAACTCATT  178
      ||||| ||||| |||||||||||   |||| |||||   |||||||||||
seq2  TCTTTCCTTGATTCTGGGACAAAATAATGC-TGGGTGTGGAAAACTCATT  198

seq1  ATGTTTTATACTTG-TGTGATGGTTTGTCTTGCGCGCGCCGGACTCGACC  227
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGTTTTATACTTGTTGTGATGGTTTGTCTTGCGCGCGCCGGACTCGACC  248

seq1  AGCAAGAACGACGCTGCAACAGGATCC-TTCTGCACACGTTTATTGGGAG  276
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCAAGAACGACGCTGCAACAGGATCCTTTCTGCACACGTTTATTGGGAG  298

seq1  AGCTTGATTGCAGAGGCGAAGAGACCCTGAGCCCAGAACTGGTGCTGCTT  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATTGCAGAGGCGAAGAGACCCTGAGCCCAGAACTGGTGCTGCTT  348

seq1  ATATAGGCCTAGGAGAGGCGTGTCTCACACCCGGATTGGTTATGCACTAT  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGCCTAGGAGAGGCGTGTCTCACACCCGGATTGGTTATGCACTAT  398

seq1  GCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCTCTGTACC  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCTCTGTACC  448

seq1  TCACAGAGCCTCATTATCATACCTCATTTGCATGTCTCACATCTGATTGG  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGCCTCATTATCATACCTCATTTGCATGTCTCACATCTGATTGG  498

seq1  TTATACTCTCAAAGCCTAATTATCATGCCCGGGCCAGGCAGTGTTTTTGC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCTCAAAGCCTAATTATCATGCCCGGGCCAGGCAGTGTTTTTGC  548

seq1  AAAAAACTTTACTGCATATGTACACATTGGTTGTTTGTCCAAACTTATGC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTTACTGCATATGTACACATTGGTTGTTTGTCCAAACTTATGC  598

seq1  GTGGTGGCCAGCAGTAGTCAGTGCCACTCTGCAACGGCACATGTGGCTTC  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCCAGCAGTAGTCAGTGCCACTCTGCAACGGCACATGTGGCTTC  648

seq1  CCACAGTTTGTATATGCTCGGCCTAGGGAGTGGCACTATTAGAAGGTGTG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTTGTATATGCTCGGCCTAGGGAGTGGCACTATTAGAAGGTGTG  698

seq1  GCCCTGTTGGAGTAGGTGTGGCCCAGTTGGTGGAGGTGTGACCTTGTTGG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTGGAGTAGGTGTGGCCCAGTTGGTGGAGGTGTGACCTTGTTGG  748

seq1  AGAAGGTGTTTAAGATCCTCTTTCTAGCTGCCTAGAAGTCAGTATTCTGC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGTTTAAGATCCTCTTTCTAGCTGCCTAGAAGTCAGTATTCTGC  798

seq1  TAGCAGCCTTCAGATGAAGATGTTGAACTCTCAGCTCTTCCTGTACCATA  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCTTCAGATGAAGATGTTGAACTCTCAGCTCTTCCTGTACCATA  848

seq1  CCTGCCTGGATGTTAGCCTCTGAACCTGTAACCCAGCCCCAGTTAAATGT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGGATGTTAGCCTCTGAACCTGTAACCCAGCCCCAGTTAAATGT  898

seq1  TTTTTTATAAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGCAGAAAAAC  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGCAGAAAAAC  948

seq1  CCTAACTAATACAACTTATGACATGCAATTTTATGTATTTCTATGCTGCT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAATACAACTTATGACATGCAATTTTATGTATTTCTATGCTGCT  998

seq1  TCAATAAGACACTGAAAGAAGGAATCCCTAGCCCCGCATCTACTACTCAT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGACACTGAAAGAAGGAATCCCTAGCCCCGCATCTACTACTCAT  1048

seq1  AGTTACCCAAGACAGGTAATGATCTGGTTGCTAGGAAAAAAGAGCAAGGT  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCCAAGACAGGTAATGATCTGGTTGCTAGGAAAAAAGAGCAAGGT  1098

seq1  CACATCTTCAAATTGACATGCTGATACAGTTAAGAGTCTTCAAATTAAGC  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCAAATTGACATGCTGATACAGTTAAGAGTCTTCAAATTAAGC  1148

seq1  ATGGTTTTTCTCTCCCCTTCCTTCCTTCTTTCCTTCCTTCTGTCCTTCCT  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTCTCTCCCCTTCCTTCCTTCTTTCCTTCCTTCTGTCCTTCCT  1198

seq1  TTCCCAGAATTC  1188
      ||||||||||||
seq2  TTCCCAGAATTC  1210

seq1: chr12_86199758_86200199
seq2: B6Ng01-331C13.g_67_508

seq1  GAATTCCATTCTCGTGTAGGTGTTTGATTGGTCCAACGAACAGCTCACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTCGTGTAGGTGTTTGATTGGTCCAACGAACAGCTCACGG  50

seq1  GGAATGGGAAATCAGAAGGGAAACTGGATACATCATCTCCGCTGTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGAAATCAGAAGGGAAACTGGATACATCATCTCCGCTGTCTGTT  100

seq1  ACATCATCACAGATGAAAGTCATACGACTTCCAGAGCAGCCAGCTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCACAGATGAAAGTCATACGACTTCCAGAGCAGCCAGCTGTGTT  150

seq1  GATAGATAAACACCTTCCTGGGAAGATGACCGTTCCCAGCTGGCTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAAACACCTTCCTGGGAAGATGACCGTTCCCAGCTGGCTGAGGG  200

seq1  AGGGTCTGAGCTTCGGACCAGATCTCATCAGCCTGTTTTGTATATATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGAGCTTCGGACCAGATCTCATCAGCCTGTTTTGTATATATCAC  250

seq1  CAGACTGCAGTGTCTGGTTTGTTCTGAGCCAATCACATGTATTATGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCAGTGTCTGGTTTGTTCTGAGCCAATCACATGTATTATGAGAC  300

seq1  TGGATCATGAACTCCTCTTTTTCTCTTTTACAAAGGCACCCAAAATGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATGAACTCCTCTTTTTCTCTTTTACAAAGGCACCCAAAATGATC  350

seq1  CACTATGGTGGCCTCAATTGCCTAGCTAAGAGAAGGAAAGTTCTGACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGTGGCCTCAATTGCCTAGCTAAGAGAAGGAAAGTTCTGACAGT  400

seq1  TTTTACTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG  442