BAC Information

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BAC

Clone NameB6Ng01-331E06
Chromosome17 (Build37)12 (Build37)
Map Location 39,672,653 - 39,673,38828,657,054 - 28,657,969
singlet/doubletsingletsinglet
Overlap geneLOC100043300
Upstream geneLOC100043297
Downstream geneEG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331E06.bB6Ng01-331E06.g
ACCGA117683GA117684
length678925
definitionB6Ng01-331E06.b B6Ng01-331E06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,672,653 - 39,673,388)(28,657,054 - 28,657,969)
sequence
gaattcagagccaacctggcctatctgaagcccagtatcaaatgtgaaca
aacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
agcgatcatgtacagatgaataaatacattgaaatggagttttctagcca
tcgatatgatgtgttgctatatgttacttcctatttgactaggttgttat
gtgaagatggctgggcagtaccataatttcctatatacttcaaagattaa
ggtttctgatgtgtcactagccactatataattagcattgcaactaatgt
aatcttactgtaataaacttacttacatgctctacatagttagctagaat
tgcttagttcataccttttaattcagagcagctcctgttgcaggttctgg
tgcttctgtcattctctggttcacctcttttctttgtgtagaggcgggtc
tttagagatttgaagactgacgtggttgtgtgacattggctgctatttct
agcaaagcggttcaattgaagtgtttttcgtgggttgtgatacttggacc
tcagaatatttaatacatacacgtaattggtgggtcaaaatatccacttt
tttatacacctgaatatttcctttttactacttttgcaagcaagagatag
gtcgggttttgtcatatccattatttca
gaattcaaatagtctcctttgagtcataccttggtaaccatcatttctca
gatgtacccaagtatctatcaactcaaaagctcagaagggagatggaatg
agagatgtaaagggtggttgcagggagcagatagctctggcaacccctgc
cactacacatattagggaatttcccacagtgctgggtctaatgccaatta
ctgggaactcctggcctcaaggttatgctttggtatctagttgcaagatg
aagcttatgcatgtaagaatccagatttgaatccagaccaagacttaggg
agaacagatttatggaaacaggatatacttatacccagtgaagcagagcc
tgatgggtatccattggttctttcccatgcccatcccaatgcaaccctta
acccacatttcagaagcaagcagctattagttgatgcttcctaataggag
cccactttctccaggtgtagcaaggtggccctgctgagtagaggactggg
ctcatttgcatattcagggctttattcctgtgtgattaatgccactagta
actgatagtgagtccttgggagtatgagtgattctaggaaataagaggga
atcaaagttcaatgtcactccaagggcaacaccagcctttcccacattct
tttctatatctttcctttttgtttgtttgtttgtttgtttgtttgttgtt
ttttcttgcaagtttacaaattctgtttctaattacgctgggggaaactc
acaagaaacatttttgggggggttctctttaattaaaatcttcaaatttc
tactcaagacttcttaaaattccttggaaccaaggggctagataaaagag
aatcatataaaaaataaaatcttaaaaaccttcctcttatttggcaattt
taaaagacgttgtccttataattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39672653_39673388
seq2: B6Ng01-331E06.b_147_720 (reverse)

seq1  TGAAATAAACAATAAATTTCTGCCATCAGAATGGGAAGACAACATAGCAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGAGGAAAAACTCTTGAAAGAGGTAAAATATAGAAAAAAATTGTAAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACGCTTATTATGGGCACACACACACAAACACACAGTGAATTAAACAAAGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCTATTCCCACATAGTGAA--TATGGATATGACAAAACCCGACCTATCTC  198
                     ||||   ||||||||||||||||||||||||||||
seq2  ---------------TGAAATAATGGATATGACAAAACCCGACCTATCTC  35

seq1  TTGCTTGCAAAAGTAGT-AAAAGGAAATATTCAGGTGTATAAAAAAGTGG  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGCTTGCAAAAGTAGTAAAAAGGAAATATTCAGGTGTATAAAAAAGTGG  85

seq1  ATATTTTGACCCACCAATTACGTGTATGTATTAAATATTCTGAGGTCCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGACCCACCAATTACGTGTATGTATTAAATATTCTGAGGTCCAA  135

seq1  GTATCACAACCCACGAAAAACACTTCAATTGAACCGCTTTGCTAGAAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACAACCCACGAAAAACACTTCAATTGAACCGCTTTGCTAGAAATA  185

seq1  GCAGCCAATGTCACACAACCACGTCAGTCTTCAAATCTCTAAAGACCCGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAATGTCACACAACCACGTCAGTCTTCAAATCTCTAAAGACCCGC  235

seq1  CTCTACACAAAGAAAAGAGGTGAACCAGAGAATGACAGAAGCACCAGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACAAAGAAAAGAGGTGAACCAGAGAATGACAGAAGCACCAGAAC  285

seq1  CTGCAACAGGAGCTGCTCTGAATTAAAAGGTATGAACTAAGCAATTCTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACAGGAGCTGCTCTGAATTAAAAGGTATGAACTAAGCAATTCTAG  335

seq1  CTAACTATGTAGAGCATGTAAGTAAGTTTATTACAGTAAGATTACATTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATGTAGAGCATGTAAGTAAGTTTATTACAGTAAGATTACATTAG  385

seq1  TTGCAATGCTAATTATATAGTGGCTAGTGACACATCAGAAACCTTAATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGCTAATTATATAGTGGCTAGTGACACATCAGAAACCTTAATCT  435

seq1  TTGAAGTATATAGGAAATTATGGTACTGCCCAGCCATCTTCACATAACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTATATAGGAAATTATGGTACTGCCCAGCCATCTTCACATAACAA  485

seq1  CCTAGTCAAATAGGAAGTAACATATAGCAACACATCATATCGATGGCTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCAAATAGGAAGTAACATATAGCAACACATCATATCGATGGCTAG  535

seq1  AAAACTCCATTTCAATGTATTTATTCATCTGTACATGAT  736
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCATTTCAATGTATTTATTCATCTGTACATGAT  574

seq1: chr12_28657054_28657969
seq2: B6Ng01-331E06.g_68_992 (reverse)

seq1  GTAATTATAA-GACACTTATTTTTAAATTTGCAAAATAGAGGGAAAGGTT  49
      |||||||||| ||||     ||||||| |||| |||||   |||| | ||
seq2  GTAATTATAAGGACAACGTCTTTTAAAATTGCCAAATAAGAGGAAGGTTT  50

seq1  TTAAGATTTCTTATTTTAATATGTTTCTCTTTT-TCTAGCCCCTT-GCTA  97
      ||||||||| |  |||| ||||| ||||||||| ||||||||||| | | 
seq2  TTAAGATTT-TATTTTTTATATGATTCTCTTTTATCTAGCCCCTTGGTTC  99

seq1  CAAGGAATATTAAGAAGTACATGAGTAGAAA-TTGAAGATTTTAATTTAA  146
      |||||||| ||||||||| | |||||||||| ||||||||||||||| ||
seq2  CAAGGAATTTTAAGAAGT-CTTGAGTAGAAATTTGAAGATTTTAATTAAA  148

seq1  GAGAACCCCC---AAAATG-TTCTTGTGTGTTT-CCCCAGCGT-TTTAG-  189
      ||||||||||   |||||| |||||||| |||| |||||||||  |||| 
seq2  GAGAACCCCCCCAAAAATGTTTCTTGTGAGTTTCCCCCAGCGTAATTAGA  198

seq1  AACAGAATTTGT-AGCTTGCAAGAAAAAACAAACAAACAAACAAACAAAC  238
      |||||||||||| | ||||||||||||||| |||||||||||||||||||
seq2  AACAGAATTTGTAAACTTGCAAGAAAAAAC-AACAAACAAACAAACAAAC  247

seq1  AAACAAACAAAAAGGAAAGATATAGAAAAGAATGTGGGAAAGGCTGGTGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAAGGAAAGATATAGAAAAGAATGTGGGAAAGGCTGGTGT  297

seq1  TGCCCTTGGAGTGACATTGAACTTTGATTCCCTCTTATTTCCTAGAATCA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGGAGTGACATTGAACTTTGATTCCCTCTTATTTCCTAGAATCA  347

seq1  CTCATACTCCCAAGGACTCACTATCAGTTACTAGTGGCATTAATCACACA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTCCCAAGGACTCACTATCAGTTACTAGTGGCATTAATCACACA  397

seq1  GGAATAAAGCCCTGAATATGCAAATGAGCCCAGTCCTCTACTCAGCAGGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAGCCCTGAATATGCAAATGAGCCCAGTCCTCTACTCAGCAGGG  447

seq1  CCACCTTGCTACACCTGGAGAAAGTGGGCTCCTATTAGGAAGCATCAACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGCTACACCTGGAGAAAGTGGGCTCCTATTAGGAAGCATCAACT  497

seq1  AATAGCTGCTTGCTTCTGAAATGTGGGTTAAGGGTTGCATTGGGATGGGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGCTTGCTTCTGAAATGTGGGTTAAGGGTTGCATTGGGATGGGC  547

seq1  ATGGGAAAGAACCAATGGATACCCATCAGGCTCTGCTTCACTGGGTATAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAGAACCAATGGATACCCATCAGGCTCTGCTTCACTGGGTATAA  597

seq1  GTATATCCTGTTTCCATAAATCTGTTCTCCCTAAGTCTTGGTCTGGATTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCTGTTTCCATAAATCTGTTCTCCCTAAGTCTTGGTCTGGATTC  647

seq1  AAATCTGGATTCTTACATGCATAAGCTTCATCTTGCAACTAGATACCAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGATTCTTACATGCATAAGCTTCATCTTGCAACTAGATACCAAA  697

seq1  GCATAACCTTGAGGCCAGGAGTTCCCAGTAATTGGCATTAGACCCAGCAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACCTTGAGGCCAGGAGTTCCCAGTAATTGGCATTAGACCCAGCAC  747

seq1  TGTGGGAAATTCCCTAATATGTGTAGTGGCAGGGGTTGCCAGAGCTATCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAATTCCCTAATATGTGTAGTGGCAGGGGTTGCCAGAGCTATCT  797

seq1  GCTCCCTGCAACCACCCTTTACATCTCTCATTCCATCTCCCTTCTGAGCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGCAACCACCCTTTACATCTCTCATTCCATCTCCCTTCTGAGCT  847

seq1  TTTGAGTTGATAGATACTTGGGTACATCTGAGAAATGATGGTTACCAAGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTGATAGATACTTGGGTACATCTGAGAAATGATGGTTACCAAGG  897

seq1  TATGACTCAAAGGAGACTATTTGAATTC  916
      ||||||||||||||||||||||||||||
seq2  TATGACTCAAAGGAGACTATTTGAATTC  925