BAC Information

Click to search

BAC

Clone NameB6Ng01-332H20
Chromosome12 (Build37)
Map Location 107,714,764 - 107,933,183
singlet/doubletdoublet
Overlap geneLOC100040451
Upstream geneD430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332H20.bB6Ng01-332H20.g
ACCGA118575GA118576
length1,1101,188
definitionB6Ng01-332H20.b B6Ng01-332H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,714,764 - 107,715,862)(107,931,982 - 107,933,183)
sequence
gaattcactgccacacggtacaaattttaaaaggtgcctgcagcatgtct
ctttgtctcctggtgttttgtgtggatgttcacggagtttttccttctaa
ccaacaaccacaaatcttccttagaatgccatgtctctagttgctctcag
tttcctttaaatctataagcaaatagcaataaatctgggagggaactata
catatttttacagtccccccatttctttcctctaaatttcttgaagaatt
taacaaagatgccaccatgccgctggtcgcaatgggacaagttagagggg
tcagggagggtgctatcccatgctgccaaacacgggagcacccagattcc
agtatcagagagaaagaatgtaatataatgttttaagagaaaccagaaca
aatgcgaagacgtccacaatgaaccaaagatttaaattgtaaataaagat
gggatcaggtcttgtccactggctttcggaagaatgaactgggcaccagt
ctttctggtatgtcgagaatggtttagggaaatgccttgcaggtaatcta
ttaggcaaggcttattattttaagggctaaggtcacaggcacaggagaag
gttccaacggccagtcctcccccctcccccggaggtgactgaatcagaag
tctgcccattcttctctgaactcagttctcagtcctgaacaaacactttt
tgtttctgcaaacctcacagggggagctagggagtagctcccggctcaaa
ggccttcttacaaaaggacttttttttttttttttttttttttttaaatt
gctggatttggatagtaacttttaagtggggtcagtggtctttgcaggga
accgggtggatggctgctaagatcactgctaaggatttggggtccttcag
tatgcagaccaaagtcagggagttcagagatgttggttccaatgtcagtc
acattagacttgggtggaaatgggcagacttgcatgaccatatcacctca
ggctgctattcacatgctggcacatggtgtgtgggcttgtggtggggaga
attgcccaagagctcgcttcacttgagaacttacacgaggccagtgagcg
tgcacacaac
gaattcccacttgtggaatgggcttgcacacagtttgccaatcactagtc
taaccccttatcaccagaagtgtgaccacagaccctgagctattatattc
ttctcaatgaaactgtcctgtgggtttaaagaaagggtcaactttccata
ttttatttttgtttaggaatagctcccacatgcattctccttcaaatatg
tcagcaaattctgttgcaaaagatatatagagatagagatagagatagag
atagagatagagatagagatgatagagacagagacagagatagatatata
gatatgccagaattctagaatctgtgagactttccttagcacctgtctgt
ccctctgaacctgtctaaagaactcttgttttcggatgatgctctcctgg
tatgcgttgctcagcagtaccaaggatgttgaaaaccaaaaccattttca
ccctttgttgctggcctatggctgtgagctagagctggagttcaaaggct
cacccagcaggttgaatgtgaagctcaccgctaattggttgagacacctt
ctcttgacccattgggagacacgcccagaagcacccataactagagggcc
attttgagaaggagagagaagctgcagtcagccctgggctgcatctgcca
gctgagagcttggtggtcctgaggagtttgtttgcttttctgaatatccc
caaatctctcttcctcggtcagggaaggagtcaatcgcactacacagtcc
ctggggcctttcttggtcacattcctgtttcctgtctttaaggggaaatg
ggatggaaaggtaacatctcagatgaggacaaagagaacggaagagtcct
cccctctaccttagactcactctgaagtttaactgcaggaagagaactat
agttacattttatttctggactcagacccacaggggctcatgccctcctg
gaagaaggcagacacaaggcttatcttcagccttgctatcagacccacca
gcctggtctgaacttcagctccacctcatcctcaaggaattaagcagcct
gctctcccttcgtcttgcctcggttccccagtgtgtcatgggagtgttag
agttaagtggcactttataaagattggtttaagccagattgtggattatt
catgtcatccatcagtctatcctgcacatagacgcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107714764_107715862
seq2: B6Ng01-332H20.b_48_1157

seq1  GAATTCACTGCCACACGGTACAAATTTTAAAAGGTGCCTGCAGCATGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCACACGGTACAAATTTTAAAAGGTGCCTGCAGCATGTCT  50

seq1  CTTTGTCTCCTGGTGTTTTGTGTGGATGTTCACGGAGTTTTTCCTTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCCTGGTGTTTTGTGTGGATGTTCACGGAGTTTTTCCTTCTAA  100

seq1  CCAACAACCACAAATCTTCCTTAGAATGCCATGTCTCTAGTTGCTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACCACAAATCTTCCTTAGAATGCCATGTCTCTAGTTGCTCTCAG  150

seq1  TTTCCTTTAAATCTATAAGCAAATAGCAATAAATCTGGGAGGGAACTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTAAATCTATAAGCAAATAGCAATAAATCTGGGAGGGAACTATA  200

seq1  CATATTTTTACAGTCCCCCCATTTCTTTCCTCTAAATTTCTTGAAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTACAGTCCCCCCATTTCTTTCCTCTAAATTTCTTGAAGAATT  250

seq1  TAACAAAGATGCCACCATGCCGCTGGTCGCAATGGGACAAGTTAGAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGATGCCACCATGCCGCTGGTCGCAATGGGACAAGTTAGAGGGG  300

seq1  TCAGGGAGGGTGCTATCCCATGCTGCCAAACACGGGAGCACCCAGATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGGGTGCTATCCCATGCTGCCAAACACGGGAGCACCCAGATTCC  350

seq1  AGTATCAGAGAGAAAGAATGTAATATAATGTTTTAAGAGAAACCAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGAGAGAAAGAATGTAATATAATGTTTTAAGAGAAACCAGAACA  400

seq1  AATGCGAAGACGTCCACAATGAACCAAAGATTTAAATTGTAAATAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAAGACGTCCACAATGAACCAAAGATTTAAATTGTAAATAAAGAT  450

seq1  GGGATCAGGTCTTGTCCACTGGCTTTCGGAAGAATGAACTGGGCACCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGGTCTTGTCCACTGGCTTTCGGAAGAATGAACTGGGCACCAGT  500

seq1  CTTTCTGGTATGTCGAGAATGGTTTAGGGAAATGCCTTGCAGGTAATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGTATGTCGAGAATGGTTTAGGGAAATGCCTTGCAGGTAATCTA  550

seq1  TTAGGCAAGGCTTATTATTTTAAGGGCTAAGGTCACAGGCACAGGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAAGGCTTATTATTTTAAGGGCTAAGGTCACAGGCACAGGAGAAG  600

seq1  GTTCCAACGGCCAGTCCTCCCCCCTCCCCCGGAGGTGACTGAATCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACGGCCAGTCCTCCCCCCTCCCCCGGAGGTGACTGAATCAGAAG  650

seq1  TCTGCCCATTCTTCTCTGAACTCAGTTCTCAGTCCTGAACAAACACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCATTCTTCTCTGAACTCAGTTCTCAGTCCTGAACAAACACTTTT  700

seq1  TGTTTCTGCAAACCTCACAGGGGGAGCTAGGGAGTAGCTCCCGGCTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGCAAACCTCACAGGGGGAGCTAGGGAGTAGCTCCCGGCTCAAA  750

seq1  GGCCTTCTTACAAAAGGACTTTTTTTTTTTTTTTTTTTTTTTTTTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTTACAAAAGGACTTTTTTTTTTTTTTTTTTTTTTTTTTAAATT  800

seq1  GCTGGATTTGGATAGTAACTTTTAAGTGGGGTCAGTGGTCTTTGCA-GGA  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTGGATTTGGATAGTAACTTTTAAGTGGGGTCAGTGGTCTTTGCAGGGA  850

seq1  ACC-GGTGGATGGCTGCTAAGATCACTGCTAAGGATTTGGGGTCCTTCAG  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTGGATGGCTGCTAAGATCACTGCTAAGGATTTGGGGTCCTTCAG  900

seq1  TATGCAGACCAAAGTCAGGGAGTTCAGAGATGTT-GTTCCAATG-CAGTC  946
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TATGCAGACCAAAGTCAGGGAGTTCAGAGATGTTGGTTCCAATGTCAGTC  950

seq1  ACATTAGAC-TGGGTGGAAATGGGCAGAC-TGCATGACCATAATCA-CTC  993
      ||||||||| ||||||||||||||||||| ||||||||||| |||| |||
seq2  ACATTAGACTTGGGTGGAAATGGGCAGACTTGCATGACCAT-ATCACCTC  999

seq1  AGGCCTGCCTATTCACCATGCTTGCACA---TGTGTGTGCTTGTG--TGG  1038
      ||| ||| ||||||| |||||| |||||   |||||| |||||||   ||
seq2  AGG-CTG-CTATTCA-CATGCTGGCACATGGTGTGTGGGCTTGTGGTGGG  1046

seq1  GAGATATGCCCAAGAGCTCGC-TCAC-TGAGAACATACACGATGCCAGTG  1086
      ||||  ||||||||||||||| |||| ||||||| ||||||| |||||||
seq2  GAGAATTGCCCAAGAGCTCGCTTCACTTGAGAACTTACACGAGGCCAGTG  1096

seq1  AGC-TGCACACAAC  1099
      ||| ||||||||||
seq2  AGCGTGCACACAAC  1110

seq1: chr12_107931982_107933183
seq2: B6Ng01-332H20.g_67_1254 (reverse)

seq1  CACGCG-CTTTGTGCAGGATAGCCTTGATGGATGTGGTAATGATATCACT  49
      |||||| || |||||||||||| | ||||||||   |  |||| || | |
seq2  CACGCGTCTATGTGCAGGATAGAC-TGATGGAT---GACATGA-AT-AAT  44

seq1  CCAACTATTCTTTGCTTAACACAATCTTTTATAAAGTGCCACTTTAACCT  99
      || || ||   | ||||||  ||||| |||||||||||||||||  | ||
seq2  CC-ACAAT--CTGGCTTAAACCAATC-TTTATAAAGTGCCACTT--AACT  88

seq1  CCTACACTCCCATGACACACTGGGGAACCGAGGGCAGACG-AGGGAGAAG  148
      |  ||||||||||||||||||||||||||||||  ||||| |||||||  
seq2  CTAACACTCCCATGACACACTGGGGAACCGAGGCAAGACGAAGGGAGA--  136

seq1  GCAGGCTGCTTAATTCCCTTGAGGAATGAGGTGGAGCTGAAGTTCAGACC  198
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  GCAGGCTGCTTAATT-CCTTGAGG-ATGAGGTGGAGCTGAAGTTCAGACC  184

seq1  AGGCCTGGTGGGTCTGATAGCAA-GCTGAAGATAAGCCTTGTGTCTGCCT  247
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGG-CTGGTGGGTCTGATAGCAAGGCTGAAGATAAGCCTTGTGTCTGCCT  233

seq1  TCCTCCAGG-GGGCATG-GCCCCTGTGGTTCTGAGTCCAGAAATAAAATG  295
      || |||||| ||||||| |||||||||| |||||||||||||||||||||
seq2  TCTTCCAGGAGGGCATGAGCCCCTGTGGGTCTGAGTCCAGAAATAAAATG  283

seq1  TAACTATAGTTCTCTTCCTGCAGTTAAACTTCAGAGTGAAGTCTAAGGTA  345
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAACTATAGTTCTCTTCCTGCAGTTAAACTTCAGAGTG-AGTCTAAGGTA  332

seq1  GAGGGGAGGACTCTTCCGTTCTCTTTGTCCTCATCCTGAGATGTTACCTT  395
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGGGGAGGACTCTTCCGTTCTCTTTGTCCTCAT-CTGAGATGTTACCTT  381

seq1  TCCATCCCATTTCCCCTTAAAGACAGGAAACAGGAATGTGACCAAGAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCATTTCCCCTTAAAGACAGGAAACAGGAATGTGACCAAGAAAG  431

seq1  GCCCCAGGGACTGTGTAGTGCGATTGACTCCTTCCCTGACCGAGGAAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGGACTGTGTAGTGCGATTGACTCCTTCCCTGACCGAGGAAGAG  481

seq1  AGATTTGGGGATATTCAGAAAAGCAAACAAACTCCTCAGGACCACCAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGGGATATTCAGAAAAGCAAACAAACTCCTCAGGACCACCAAGC  531

seq1  TCTCAGCTGGCAGATGCAGCCCAGGGCTGACTGCAGCTTCTCTCTCCTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTGGCAGATGCAGCCCAGGGCTGACTGCAGCTTCTCTCTCCTTC  581

seq1  TCAAAATGGCCCTCTAGTTATGGGTGCTTCTGGGCGTGTCTCCCAATGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGCCCTCTAGTTATGGGTGCTTCTGGGCGTGTCTCCCAATGGG  631

seq1  TCAAGAGAAGGTGTCTCAACCAATTAGCGGTGAGCTTCACATTCAACCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAAGGTGTCTCAACCAATTAGCGGTGAGCTTCACATTCAACCTG  681

seq1  CTGGGTGAGCCTTTGAACTCCAGCTCTAGCTCACAGCCATAGGCCAGCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGAGCCTTTGAACTCCAGCTCTAGCTCACAGCCATAGGCCAGCAA  731

seq1  CAAAGGGTGAAAATGGTTTTGGTTTTCAACATCCTTGGTACTGCTGAGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTGAAAATGGTTTTGGTTTTCAACATCCTTGGTACTGCTGAGCA  781

seq1  ACGCATACCAGGAGAGCATCATCCGAAAACAAGAGTTCTTTAGACAGGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATACCAGGAGAGCATCATCCGAAAACAAGAGTTCTTTAGACAGGTT  831

seq1  CAGAGGGACAGACAGGTGCTAAGGAAAGTCTCACAGATTCTAGAATTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACAGACAGGTGCTAAGGAAAGTCTCACAGATTCTAGAATTCTG  881

seq1  GCATATCTATATATCTATCTCTGTCTCTGTCTCTATCATCTCTATCTCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCTATATATCTATCTCTGTCTCTGTCTCTATCATCTCTATCTCTA  931

seq1  TCTCTATCTCTATCTCTATCTCTATCTCTATATATCTTTTGCAACAGAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTCTATCTCTATCTCTATCTCTATATATCTTTTGCAACAGAAT  981

seq1  TTGCTGACATATTTGAAGGAGAATGCATGTGGGAGCTATTCCTAAACAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACATATTTGAAGGAGAATGCATGTGGGAGCTATTCCTAAACAAA  1031

seq1  AATAAAATATGGAAAGTTGACCCTTTCTTTAAACCCACAGGACAGTTTCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATATGGAAAGTTGACCCTTTCTTTAAACCCACAGGACAGTTTCA  1081

seq1  TTGAGAAGAATATAATAGCTCAGGGTCTGTGGTCACACTTCTGGTGATAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGAATATAATAGCTCAGGGTCTGTGGTCACACTTCTGGTGATAA  1131

seq1  GGGGTTAGACTAGTGATTGGCAAACTGTGTGCAAGCCCATTCCACAAGTG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTAGACTAGTGATTGGCAAACTGTGTGCAAGCCCATTCCACAAGTG  1181

seq1  GGAATTC  1202
      |||||||
seq2  GGAATTC  1188