BAC Information

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BAC

Clone NameB6Ng01-333J22
Chromosome12 (Build37)
Map Location 112,467,019 - 112,468,228
singlet/doubletsinglet
Overlap geneTraf3
Upstream geneDio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik
Downstream geneAmn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333J22.bB6Ng01-333J22.g
ACCGA119367GA119368
length1,185168
definitionB6Ng01-333J22.b B6Ng01-333J22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactccctttattaaagcccagtggctttagtctgcttttaaatg
gtatagctaccaccattctctaattccagaatattcttacctttccactg
agatgcccaccccctcctgtcctcttgttttttcgtttttgttttttgag
acaggatttctctgtgtagccctggctgtcctggaactcagtctgtagac
caggctggcctcaaactcagaaatccgcctgcctctgcctcccgagtgct
gggattaaaggcgtgcaccaccatgcccggctctgaagaattttcttatc
agcacatgaaaacttgaattattattatctactagtctatgctacttttc
attgaagtatctttcactcatgctatcttctgagttttagcacatgactt
aatactaacaattaaattacttttacttataaatagtgtgaacagtatct
ccacagggacatagattacacgaagatcatatgccacaggagccacaggg
ttgctttttttttctaacacccaccctcccctcccaacaagatactctgc
ctaccgagtgctgggattaaaggtgtgtgccacccccaaccctcttcagc
ttcatttcctaaaataaacacatgagcgtgtgcacacacacacacacaca
cacacacgcacacacatgcacacacacacacatgcactcacagtatagaa
actgtgtttctacaggcaatgtatttaagctgtatttaaagaccatactt
tctagcccaattaggggagtgtgttgcccacagaacacttagcatctgcg
gcatgctacactctcagaggctggatgtcaacctaataatcctattcaga
acataattcctgaacttttccactttccaattcacaaaaaaagatactat
tctgtttactctgcatcagaaagcttcttgcaagttgctgtgctcacagc
agcaatgtttaaaagcgcactacagtaaactgaccacacacaggcagtgc
cctcctaggagagcatgggatgcagcacggtgctggagtacatgcacggc
ccagactgatccacgtgattgtatgcaaattatatgataatcttattcat
tgtgaaatataagaagtctagagtataatcttgcaaaaaacaagactcac
ttggttgaccttttagtttcagctcacaatcaggc
tggggactttttagaggttatataaatgccaggtggtgggtgattggttg
gttgtgggttgtgttgttgattgttgttggttgctggttgtagttggtgt
cagttggttaagtacttgtgcgcaacgaataaacaagaggaaattagaca
tcctggcagcatagatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112467019_112468228
seq2: B6Ng01-333J22.b_44_1228 (reverse)

seq1  GCCTGATTGTTGAGCTGAACATTAAAAGTTTAAACCAGAAAGTGAGTCTT  50
      ||||||||| ||||||||| | |||||| | || |    |||||||||||
seq2  GCCTGATTG-TGAGCTGAA-ACTAAAAGGTCAACC----AAGTGAGTCTT  44

seq1  GTTTTTTTCCAAGATTTATATACTCTAGACCTCTTATATTTCCACATGAA  100
      | |||||| ||||||   |||||||||||| |||||||||||   |||||
seq2  G-TTTTTTGCAAGAT---TATACTCTAGACTTCTTATATTTCACAATGAA  90

seq1  TTTAAAGATTATCATATTAATTTTTGCATTACAAATCACGGTGGATCAGT  150
      |   ||||||||||||| |   |||||| ||| |||||| ||||||||||
seq2  T---AAGATTATCATATAA---TTTGCA-TAC-AATCAC-GTGGATCAGT  131

seq1  CCTGGGCCGTGCCATGTACTCCAGCACCGTGCTGCATCCCATGCTCCTCC  200
       |||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  -CTGGGCCGTG-CATGTACTCCAGCACCGTGCTGCATCCCATGCT-CTCC  178

seq1  TTAGGAGGGCACTTGCCTGGTGTGTGGTCAGTTTACTGTAGTGCGCTTTT  250
       ||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  -TAGGAGGGCAC-TGCCT-GTGTGTGGTCAGTTTACTGTAGTGCGCTTTT  225

seq1  AAACATTGCTGCTGTGAGCACAGCAACTTGCAAGAAGCTTTCTGATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGCTGCTGTGAGCACAGCAACTTGCAAGAAGCTTTCTGATGCAG  275

seq1  AGTAAACAGAATAGTATCTTTTTTTGTGAATTGGAAAGTGGAAAAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAGAATAGTATCTTTTTTTGTGAATTGGAAAGTGGAAAAGTTCA  325

seq1  GGAATTATGTTCTGAATAGGATTATTAGGTTGACATCCAGCCTCTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATGTTCTGAATAGGATTATTAGGTTGACATCCAGCCTCTGAGAG  375

seq1  TGTAGCATGCCGCAGATGCTAAGTGTTCTGTGGGCAACACACTCCCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATGCCGCAGATGCTAAGTGTTCTGTGGGCAACACACTCCCCTAA  425

seq1  TTGGGCTAGAAAGTATGGTCTTTAAATACAGCTTAAATACATTGCCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTAGAAAGTATGGTCTTTAAATACAGCTTAAATACATTGCCTGTA  475

seq1  GAAACACAGTTTCTATACTGTGAGTGCATGTGTGTGTGTGTGCATGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAGTTTCTATACTGTGAGTGCATGTGTGTGTGTGTGCATGTGTG  525

seq1  TGCGTGTGTGTGTGTGTGTGTGTGTGTGCACACGCTCATGTGTTTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTGTGTGTGTGTGTGTGTGTGTGCACACGCTCATGTGTTTATTTT  575

seq1  AGGAAATGAAGCTGAAGAGGGTTGGGGGTGGCACACACCTTTAATCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGAAGCTGAAGAGGGTTGGGGGTGGCACACACCTTTAATCCCAG  625

seq1  CACTCGGTAGGCAGAGTATCTTGTTGGGAGGGGAGGGTGGGTGTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGTAGGCAGAGTATCTTGTTGGGAGGGGAGGGTGGGTGTTAGAAA  675

seq1  AAAAAAGCAACCCTGTGGCTCCTGTGGCATATGATCTTCGTGTAATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAACCCTGTGGCTCCTGTGGCATATGATCTTCGTGTAATCTAT  725

seq1  GTCCCTGTGGAGATACTGTTCACACTATTTATAAGTAAAAGTAATTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGGAGATACTGTTCACACTATTTATAAGTAAAAGTAATTTAAT  775

seq1  TGTTAGTATTAAGTCATGTGCTAAAACTCAGAAGATAGCATGAGTGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTATTAAGTCATGTGCTAAAACTCAGAAGATAGCATGAGTGAAAG  825

seq1  ATACTTCAATGAAAAGTAGCATAGACTAGTAGATAATAATAATTCAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAATGAAAAGTAGCATAGACTAGTAGATAATAATAATTCAAGTT  875

seq1  TTCATGTGCTGATAAGAAAATTCTTCAGAGCCGGGCATGGTGGTGCACGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGCTGATAAGAAAATTCTTCAGAGCCGGGCATGGTGGTGCACGC  925

seq1  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGA  975

seq1  GGCCAGCCTGGTCTACAGACTGAGTTCCAGGACAGCCAGGGCTACACAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGACTGAGTTCCAGGACAGCCAGGGCTACACAGA  1025

seq1  GAAATCCTGTCTCAAAAAACAAAAACGAAAAAACAAGAGGACAGGAGGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTGTCTCAAAAAACAAAAACGAAAAAACAAGAGGACAGGAGGGG  1075

seq1  GTGGGCATCTCAGTGGAAAGGTAAGAATATTCTGGAATTAGAGAATGGTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATCTCAGTGGAAAGGTAAGAATATTCTGGAATTAGAGAATGGTG  1125

seq1  GTAGCTATACCATTTAAAAGCAGACTAAAGCCACTGGGCTTTAATAAAGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATACCATTTAAAAGCAGACTAAAGCCACTGGGCTTTAATAAAGG  1175

seq1  GAGTGAATTC  1210
      ||||||||||
seq2  GAGTGAATTC  1185