BAC Information

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BAC

Clone NameB6Ng01-336E08
Chromosome12 (Build37)
Map Location 40,908,084 - 40,908,766
singlet/doubletsinglet
Overlap geneGm889
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin
Downstream geneIfrd1, EG629820, Zfp277, Dock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336E08.bB6Ng01-336E08.g
ACCGA121239GA121240
length8471,112
definitionB6Ng01-336E08.b B6Ng01-336E08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacacagttgaatccttctcaacagtctgttttgtgggaacactt
cattaccgtgacccgcagttctggttccggaatgaggaatcttccttgcg
ccggtgatggttaactcccgtcccgagttttcttgtcccgggttttttct
tcccggattttctcgtcccggattttctcgtcccgggtttcggcaccaac
tcttacacgcattcacgaccggccaggaagaacacagcaaaccagaatct
tctgcggcaaaactttattgcttacatcttcaggagccagagagccagag
agccagagagccagagagccagagagccagagagccagagagccagagag
ccagagagccagagagccagagagccagagagccagagagagaaaaagaa
caagaacaagaaagcaagagagagagaacaagaaagcaagagaaagaaaa
agaatggcaaaaccccgtcccttttaaggagaattatcctccgcctagga
tgtattactccctgattggctgcagcccatcggcccatttgtcatcacga
gaaaggcagaacacatggcgggaaaactgcccctgcacgtgtgcagatta
tgtttaccacttagaacacagctgtcagcgccatcttataatggcaaatg
tgagggcggctcccaacatgttggcatctgttttctgctttttgttgtca
gctcggcttccagttatctatcctggcagcttttaaacatagacatataa
ccacagcaatgctctggtccaggaggaaagtgctaacatctgtcactgtg
tcttaagggaatttttcaaggtttgtaggataataaaatgccctcct
gaattcctggtttttcttagactttttccatgaagggatgttgaattttg
tcaaatgcttttttcagcatctaatgaaatgatcatgtgctttttttttc
tttgagtttgttaatattgtggattatgttgatggatttccacatattga
accatccctgcatccctcggatgaaacctacttgatcatggtgaatgatt
gttttgatgtgttcttggattgagtttttattttattgagtatttttgca
tcaatattcataagggaaattggtctaaagttctctttctctgttgggtc
tttgtgtggttttggtatcagcataactgtggctttatagaatgaattag
gtagtgtttcttctctgtctattttgtggaataggtaggagattactggc
attaggtcttctttgaaggtctgatagaattctgcactaaatccatctgg
tcctgggcctttttctgttggcaggcttttaatgactgctccatttcttt
aggtgttatgggacagtttagatggtttatttgatcctgatttaactttg
gtacctggtatctgtctagaaaattgtccatttttacccagattttccag
ttttgttgagtatagacttttttaggaggatctggtgaatttttgaactt
cctcagattctgttgttatatctcccttttcatttctgattttcctaatt
tgaatactgtctctttcccctctggttattcttgttaagtgtttattcat
attgttcttttttttttttttcagagaaccaactcctggttttgttgatt
ctttgtgtaattctttttgtttctacttggttgatttcagccctaagttt
gattattttcttctgtctacttcttttggctgtatttgcttttttttttt
ttccccaaactttcagtgtgctgtaagctgctagtgtatgctttctccag
tttcttttggaggcactcagacctatgtgttttcttagcactctttcatg
tgtccataggttggaatgtgtactcattacatagatcaaaagttttattt
tccttccttcattctgaacatgtacatgatagcttcatcacctccatggt
taggggtttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40908084_40908766
seq2: B6Ng01-336E08.b_46_713 (reverse)

seq1  TGTTGGGAGCTGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTG  50

seq1  TGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100

seq1  CCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCAGC  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCATGTGTTCTGCCTTTCTCGTGATGACAAATGGGCCGATGGGCTGCAGC  150

seq1  CAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAATCAGGGAGTAATACATCCTAGGCGGAGGATAATTCTCCTTAAAAGGG  200

seq1  ACGGGGTTTTGCCATTCTTTTTCTCTCTCTTG--TTCTTGCTTTTTCTCT  248
      |||||||||||||||||||||||| |||||||  |||||| | | |||||
seq2  ACGGGGTTTTGCCATTCTTTTTCTTTCTCTTGCTTTCTTGTTCTCTCTCT  250

seq1  C------TCTTGTTCTTG--CTTTTTCTCTCTCTTG--------------  276
      |      |||||||||||  |||||||||||||| |              
seq2  CTTGCTTTCTTGTTCTTGTTCTTTTTCTCTCTCTGGCTCTCTGGCTCTCT  300

seq1  ------------------------------------CTCTTGCTTTCTTG  290
                                          |||| ||| ||| |
seq2  GGCTCTCTGGCTCTCTGGCTCTCTGGCTCTCTGGCTCTCTGGCTCTCTGG  350

seq1  TTCTTTTTCT------CTCTCTTGCAATCTTGCTCCTGAAGATGTAAGCA  334
       ||| |  ||      |||||| ||  ||| |||||||||||||||||||
seq2  CTCTCTGGCTCTCTGGCTCTCTGGCTCTCTGGCTCCTGAAGATGTAAGCA  400

seq1  ATAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGTGTTCTTCCTGGCCGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGTGTTCTTCCTGGCCGG  450

seq1  TCGCAAACGCGTGTAAGAGTTGGTGCCGAAACCCGGGAAGAGTTGGTGCT  434
      |||  || |||||||||||||||||||||||||||||| |||        
seq2  TCGTGAATGCGTGTAAGAGTTGGTGCCGAAACCCGGGACGAG--------  492

seq1  GAAACCCGGGACGAGAAGACCCGGGACGAGAAGACCTGGGACGAGAAGAC  484
       ||| |||||||||||| | |||||| || || ||| ||||| |||| ||
seq2  AAAATCCGGGACGAGAAAATCCGGGAAGAAAAAACCCGGGACAAGAAAAC  542

seq1  CTGGGACGG----TTACCATCACCGGCGCAAGGAAGATCCCTCATTCCGG  530
        |||||||    | ||||||||||||||||||||||| |||||||||||
seq2  TCGGGACGGGAGTTAACCATCACCGGCGCAAGGAAGATTCCTCATTCCGG  592

seq1  AACCAGAACTGCGGGTCACGGTCATAAAG-GTTCCCGTAAAACAGACTGT  579
      |||||||||||||||||||||| || ||| ||||||  ||||||||||||
seq2  AACCAGAACTGCGGGTCACGGTAATGAAGTGTTCCCACAAAACAGACTGT  642

seq1  TGAGAAGGATCCA---GCGTGGATTCAGAACTCTTCAGCTGGGGAATGGT  626
      |||||||||| ||   | ||| ||||                        
seq2  TGAGAAGGATTCAACTGTGTGAATTC------------------------  668

seq1  GGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCG  676
                                                        
seq2  --------------------------------------------------  668

seq1  TGAATTC  683
             
seq2  -------  668