BAC Information

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BAC

Clone NameB6Ng01-338J11
Chromosome12 (Build37)
Map Location 77,574,246 - 77,575,095
singlet/doubletsinglet
Overlap genenone
Upstream genePpp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694
Downstream genePlekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338J11.bB6Ng01-338J11.g
ACCGA122843GA122844
length906856
definitionB6Ng01-338J11.b B6Ng01-338J11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagctgggtggggtcttgccctgaggctgcctttttcctactcca
gtgcagcaaagcctctctttatggcgccagtctccttagcaaccccttcc
agcgctgccctgtttagaacattaagcctactggtgctcctttccctcta
aaccatacattttgtatttctttctgccccacttgctctctttcgttgca
gacctgcctaggactatcagtaatgcctaggccacaggctgagcagacat
ctagtcttggcgtttccttcatcgaagaaattaggtcattacttttaaat
ttagcctcagggaagttcttacggcttgggcatttgccaaaataatacag
gaacggtctgtaagcccgatgcggttgctgcccttgctttcctctgaaac
ctcttgggctggacctctgtagtccgggtggctctcagctctgctgtctt
ccaggctcctactaaaatggcttgttagactctaacaacatccaactgct
tttctagtcctaaattccaaagtcttttcatgttccatcaaacaaaaaaa
ccccaacatggttaggttcttcagagcagcagccaatctctgctaccaac
ctctgtatccgttacttttctactgtggtgacagaacaccatgaccaagg
caatttagaaaaggaagtgctgatttgggtctagtgggaagcagaaggca
cagcagcaggaacgggaaactgggagctcatattctaaaccctgagcaca
aagcagaaagagtgaacgggaagtctgtccaaagtgatgtacttcctcaa
acaaggctctgtccgcctctgagaggttccataactcctcccagacggtg
ccaccaactgggaaccaagtgttcagatacctgagctggggggtgggggg
gtgggg
gaattccgatgtgtgtatctgaaacaaccctaaaggtccacagaggagga
gaaatggcccaaggcccattggcccttggaggtcagtttgctttcaacac
ttttatttctggtctaagaatttttggtttaggctactgattaaagctcc
tgtgtgagccgggcgtggtgacacacacctttaatcccagcactggggag
gcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagtg
agttccagggacagccagagctacacagagaaaccctgtctcgaaaaacc
aaaaaaaaaaaaaaggttaagtgattctgcagcaggtgagagagagagag
agagagagagagagagagagagagagagagagagagaggagtgtcaaaca
ggaactagattggtcacacagattgtggtcttggagaagtggagaggccc
agagaattggttctcttctacaaccatgtgggtcaccatgatgactctca
ggtggtcaggcttggcagcagagagagagagagaactgtttgcaagctca
gcctgtcaaacatctgccaagaagatcgagaagagaagaggaggctggag
atgggggaggctgggggaaaggaaaaaggaagttctccaggggatcccct
cgacttcctctgccccctctccatgctggacatgacgtgggaacatgcag
tctgacctgaggcctcagatagctcttggaaggcaaaactcacttcagtg
cctcccacaaagggcggttcagacaatggaaatatcctgctccaggtgca
aatggctccctaaccgtctggtcatggcgtgagaacatttcaccccgcag
ccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77574246_77575095
seq2: B6Ng01-338J11.g_64_919

seq1  GAATTCCGATGTGTGTATCTGAAACAACCCTAAAGGTCCACAGAGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGATGTGTGTATCTGAAACAACCCTAAAGGTCCACAGAGGAGGA  50

seq1  GAAATGGCCCAAGGCCCATTGGCCCTTGGAGGTCAGTTTGCTTTCAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCCCAAGGCCCATTGGCCCTTGGAGGTCAGTTTGCTTTCAACAC  100

seq1  TTTTATTTCTGGTCTAAGAATTTTTGGTTTAGGCTACTGATTAAAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTGGTCTAAGAATTTTTGGTTTAGGCTACTGATTAAAGCTCC  150

seq1  TGTGTGAGCCGGGCGTGGTGACACACACCTTTAATCCCAGCACTGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGCCGGGCGTGGTGACACACACCTTTAATCCCAGCACTGGGGAG  200

seq1  GCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG  250

seq1  AGTTCCAGGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAACC  300

seq1  AAAAAAAAAAAAAAGGTTAAGTGATTCTGCAGCAGGTGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGGTTAAGTGATTCTGCAGCAGGTGAGAGAGAGAGAG  350

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTGTCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTGTCAAACA  400

seq1  GGAACTAGATTGGTCACACAGATTGTGGTCTTGGAGAAGTGGAGAGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGATTGGTCACACAGATTGTGGTCTTGGAGAAGTGGAGAGGCCC  450

seq1  AGAGAATTGGTTCTCTTCTACAACCATGTGGGTCACCATGATGACTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTGGTTCTCTTCTACAACCATGTGGGTCACCATGATGACTCTCA  500

seq1  GGTGGTCAGGCTTGGCAGCAGAGAGAGAGAGAGAACTGTTTGCAAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCAGGCTTGGCAGCAGAGAGAGAGAGAGAACTGTTTGCAAGCTCA  550

seq1  GCCTGTCAAACATCTGCCAAGAAGATCGAGAAGAGAAGAGGAGGCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCAAACATCTGCCAAGAAGATCGAGAAGAGAAGAGGAGGCTGGAG  600

seq1  ATGGGGGAGGCTGGGGGAAAGGAAAAAGGAAGTTCTCCAGGGGATCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGAGGCTGGGGGAAAGGAAAAAGGAAGTTCTCCAGGGGATCCCCT  650

seq1  CGACTTCCTCTGCCCCCTCTCCATGCTGGACATGACGTGGGAACATGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTCCTCTGCCCCCTCTCCATGCTGGACATGACGTGGGAACATGCAG  700

seq1  TCTGACCTGAGGCCTCAGATAGCTC-TGGAAGGCAAAAACTCAC-TCAG-  747
      ||||||||||||||||||||||||| |||||||| ||||||||| |||| 
seq2  TCTGACCTGAGGCCTCAGATAGCTCTTGGAAGGC-AAAACTCACTTCAGT  749

seq1  GCCTCCCAC-AAGGGCGGTTCAGACAATGG-AATATCCTGCTCCAGGTGC  795
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  GCCTCCCACAAAGGGCGGTTCAGACAATGGAAATATCCTGCTCCAGGTGC  799

seq1  AAATGGCTCCCTAA-CGTCTGGCCATGGCGTGAGAACA-TTCACACGCCA  843
      |||||||||||||| ||||||| ||||||||||||||| ||||| |  ||
seq2  AAATGGCTCCCTAACCGTCTGGTCATGGCGTGAGAACATTTCACCCCGCA  849

seq1  GCCTTCT  850
      |||||||
seq2  GCCTTCT  856