BAC Information

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BAC

Clone NameB6Ng01-339G18
Chromosome12 (Build37)
Map Location 111,771,190 - 111,772,303
singlet/doubletsinglet
Overlap genePpp2r5c
Upstream geneGtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799
Downstream gene9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339G18.bB6Ng01-339G18.g
ACCGA123422GA123423
length7511,119
definitionB6Ng01-339G18.b B6Ng01-339G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaatgaggaaactcaaatggccgagaaccacctaaagaaatg
ttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacacccgtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagctggtacaaccactctggaaatcagtctggcggttcctca
aaaaattggacatagtactacctgaagactaagctataccactcctgggc
atatatccagtactaccggaggatccagcaatacctctcctgggcatata
tccagaagatgctccaacatgtagtaaggacacaggctccactatgttca
tagcagccatatttataatagccaaaagctggaaacagcccagatgtccc
tcaacagaggaatggatacagaaaatgtggtacatttacacaatggagta
ctcagctattaagaataatggcttcatgaaatttgcaggcaagtggatgg
atctagaaaatatccatcctgagtgagataactcagtaacaaaagaacac
acagggtatgtactcactgataagtggatattaggcagagtgtggaatac
ccacgatacaactcacggaccacatgaagctcaagaggaaggaagaccaa
agagtggatgcttcagtcttactgaagggaagggaagggaagggaaggga
a
gaattcccaaggtcacactatgcaaaggcaggtatagctaaccgctgggc
ctgtcttcctctaggtttatttttagagcctacttaaataagtaaccaac
aactcagcctctgttagatgagtgacacttcactgtgtttcatgactcac
tttctgtctgctattttgattttattcttacgaatttacttctatgccac
agatagaaaacagcacttcataccgtgtgtttttaatatcccagtcacct
aatctaaccaactctccatgaaataagtcttgcagtttaatgtcctactg
caaaaagcaacactcacattaaaccaagtcacaaaaaacacctgagttca
aggtatcaaagactgggaatgaaaattagaaacaaggagtttgagggttg
gctcagtggttaagagcacttgttcttacaaaggacccaggttcaactcc
cagcacccacatggaagctcaagagaataaagagtgtctaagagaatagc
ttcatactgagcatgggatatggggcagagagaaagctgtccctgagagt
ctgtggatcaagtctgggctatcctcggatgtccaacactctcctttgag
cacacagtacaatagtgactggggcatctgcacctagaactggacagtag
cctctctctctgcacatctcaaatcaaatcaaaccacatcttgttcctac
cctaacaccacccacacctgcccatttctctcagctgtcccagctaagta
gcttactccactacctatctgtcatgctggggcatgtctgtcagccagcc
tgtcccacggcaacccccacccaccatggcaaagctcttcctacatgttc
tcagcaggcagccagagtgaaggggcagtgtgcactctctcacaaccatt
aggtttccagggtcaggactctagccacactccacccaaacctaagtctt
tttgctcctggggtccttgggagcacggccctgccgggcaccacctgccc
ccactctctgacttctgggcgatcagctcatcctcctagaacaagtaaca
gtgtcagctggcctgtgccagcttctcagctctgactgctgctactaact
gtctgcccttgtcttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111771190_111772303
seq2: B6Ng01-339G18.g_68_1186 (reverse)

seq1  TCTGAGGGACAAGACCAGACAG-TAGTAGCAGCAGTCAGAGCTGAG-AGC  48
      |||||  ||||||  ||||||| ||||||||||||||||||||||| |||
seq2  TCTGA-AGACAAGGGCAGACAGTTAGTAGCAGCAGTCAGAGCTGAGAAGC  49

seq1  T-GCACAGGCAGCCTGACCACTGTTACT--GTCTA-GAGGATGAGCTGAT  94
      | ||||||||   |||| ||||||||||   |||| ||||||||||||||
seq2  TGGCACAGGCCAGCTGA-CACTGTTACTTGTTCTAGGAGGATGAGCTGAT  98

seq1  CCGCCCAG-AGTCAGAGAGTGGGGCAGGGTGGTGCCCGGCAGGGGCCGTG  143
       ||||||| |||||||||||||||   |||||||||||||| ||||||||
seq2  -CGCCCAGAAGTCAGAGAGTGGGGGCAGGTGGTGCCCGGCA-GGGCCGTG  146

seq1  CT-CCAAGGACCCCAGGAGCAAAAAGACTTAGG-TTGGGTGGAGTGTGGC  191
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCCCAAGGACCCCAGGAGCAAAAAGACTTAGGTTTGGGTGGAGTGTGGC  196

seq1  TAGAGTCCTGACCCTGGAAACCTAATGGTTGTGAGAGAGTGCACACTGCC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCTGACCCTGGAAACCTAATGGTTGTGAGAGAGTGCACACTGCC  246

seq1  CCTTCACTCTGGCTGCCTGCTGAGAACATGTAGGAAGAGCTTTGCCATGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTCTGGCTGCCTGCTGAGAACATGTAGGAAGAGCTTTGCCATGG  296

seq1  TGGGTGGGGGTTGCCGTGGGACAGGCTGGCTGACAGACATGCCCCAGCAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGGGTTGCCGTGGGACAGGCTGGCTGACAGACATGCCCCAGCAT  346

seq1  GACAGATAGGTAGTGGAGTAAGCTACTTAGCTGGGACAGCTGAGAGAAAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAGGTAGTGGAGTAAGCTACTTAGCTGGGACAGCTGAGAGAAAT  396

seq1  GGGCAGGTGTGGGTGGTGTTAGGGTAGGAACAAGATGTGGTTTGATTTGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTGTGGGTGGTGTTAGGGTAGGAACAAGATGTGGTTTGATTTGA  446

seq1  TTTGAGATGTGCAGAGAGAGAGGCTACTGTCCAGTTCTAGGTGCAGATGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATGTGCAGAGAGAGAGGCTACTGTCCAGTTCTAGGTGCAGATGC  496

seq1  CCCAGTCACTATTGTACTGTGTGCTCAAAGGAGAGTGTTGGACATCCGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCACTATTGTACTGTGTGCTCAAAGGAGAGTGTTGGACATCCGAG  546

seq1  GATAGCCCAGACTTGATCCACAGACTCTCAGGGACAGCTTTCTCTCTGCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCCAGACTTGATCCACAGACTCTCAGGGACAGCTTTCTCTCTGCC  596

seq1  CCATATCCCATGCTCAGTATGAAGCTATTCTCTTAGACACTCTTTATTCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCCATGCTCAGTATGAAGCTATTCTCTTAGACACTCTTTATTCT  646

seq1  CTTGAGCTTCCATGTGGGTGCTGGGAGTTGAACCTGGGTCCTTTGTAAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTTCCATGTGGGTGCTGGGAGTTGAACCTGGGTCCTTTGTAAGA  696

seq1  ACAAGTGCTCTTAACCACTGAGCCAACCCTCAAACTCCTTGTTTCTAATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCTCTTAACCACTGAGCCAACCCTCAAACTCCTTGTTTCTAATT  746

seq1  TTCATTCCCAGTCTTTGATACCTTGAACTCAGGTGTTTTTTGTGACTTGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCCAGTCTTTGATACCTTGAACTCAGGTGTTTTTTGTGACTTGG  796

seq1  TTTAATGTGAGTGTTGCTTTTTGCAGTAGGACATTAAACTGCAAGACTTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGAGTGTTGCTTTTTGCAGTAGGACATTAAACTGCAAGACTTA  846

seq1  TTTCATGGAGAGTTGGTTAGATTAGGTGACTGGGATATTAAAAACACACG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAGAGTTGGTTAGATTAGGTGACTGGGATATTAAAAACACACG  896

seq1  GTATGAAGTGCTGTTTTCTATCTGTGGCATAGAAGTAAATTCGTAAGAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGTGCTGTTTTCTATCTGTGGCATAGAAGTAAATTCGTAAGAAT  946

seq1  AAAATCAAAATAGCAGACAGAAAGTGAGTCATGAAACACAGTGAAGTGTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAATAGCAGACAGAAAGTGAGTCATGAAACACAGTGAAGTGTC  996

seq1  ACTCATCTAACAGAGGCTGAGTTGTTGGTTACTTATTTAAGTAGGCTCTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTAACAGAGGCTGAGTTGTTGGTTACTTATTTAAGTAGGCTCTA  1046

seq1  AAAATAAACCTAGAGGAAGACAGGCCCAGCGGTTAGCTATACCTGCCTTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACCTAGAGGAAGACAGGCCCAGCGGTTAGCTATACCTGCCTTT  1096

seq1  GCATAGTGTGACCTTGGGAATTC  1114
      |||||||||||||||||||||||
seq2  GCATAGTGTGACCTTGGGAATTC  1119