BAC Information

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BAC

Clone NameB6Ng01-340E12
Chromosome12 (Build37)
Map Location 51,579,268 - 51,580,416
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneLOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340E12.bB6Ng01-340E12.g
ACCGA124034GA124035
length1,1301,162
definitionB6Ng01-340E12.b B6Ng01-340E12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataaggtttttgatggcctgtcttacaattttagcaagctcttg
ccatgacagtgttaaccattctaatgaacatatatgtcaaatacatgtga
ccaaaatgtactttgccagtatatgtctgcttagctgtatttttcatgct
ccagatcaataaggagtaagctagtctttacaggtcagttctcaaaaaca
aatacatcttgtaagtgtgtgaaagttacattaggaaaaaaagttgtgta
tggtatcaacactaccacatagccatctgaatacaatgttgacttttatt
tcatagataaatgttgatgagtaaagaacaaaagaaaacagtttcaagct
cttcagctctagtcctgaacaatgggaagtcactgaagatcaaggacgac
tttgaacaaactgacgcatccaaagcttcattgctgcagactgctgtcac
ccagacaagaagcccagtcctgccatttaagtgttcacctgcatgtggat
acatgtgccaattgtgcagagtctctgcagatcaagaggacagaggagcc
actgaactggaattccggatggctatgcactttgtgggtacagaattgaa
ctcaggtcctctgagaaaggacaagtgttaaccactgagcactcttcttt
ctgggtggcatttttggaagttccttgtctcataatgacatgtcagagtt
ttccttttttgttttttaaattttattttactatttttatttatactttt
tcttttccattttcaaccctagaatcccactgcatatatattatgacttc
taatgtaatgcttttatgagatacttgagtgtgtgaacaagtaaatgcct
ttttttgctttcccttgggctctttttcttttcttggttccaccccctca
cacacacattttaatatgttactttgtttatctatttctttattatcata
tatctcagaagcctgtttatttttctaagagagacaggataatcatgtag
agtggaattggaggattacggatgggaaactgtagaggaggcaaacccct
attttttcaataaagagaaaataatgacgactgctttatctagtgggaaa
tctccaagcctctgccacaataagacatgc
gaattcctgatctttccaagacttttatcatgaatgggtgttggatattg
tcgaatgctttttctgcatctaacgagatgatcatgtggtttttatcttt
gagtttgtttatataatgtactacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcagtatggatgattgct
ttaatgtgttcttggattaggtttgagagaattttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggctttatagactgagttg
ggtagacttccctctacttctattttgtggaatagtttgtgcagaactgg
gattagatcttctttgaaggtctggtagaactctgcactaaacccatctg
gtcctggattttttttggctgggagactattaatgactgcttctatttct
ttaggggatatgggactgtttagatcattaagttgatcctggtttaactt
tggtacctggtatctgtctagaaatgtgtccatttcgtccaggttttcca
gttttttttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccctgtgccctctagtcagtctaggtaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattttttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgattttgcttcctttttttctaga
gattttagatgtgttgacaagctgctaagatggtggtctctccctttctc
ttggatgcactgagagctatgagtttccatcttagaaatgcttacattgt
gtaccataggtttgggtatgttgtggcttcattcaattcaaactctaaac
gtctgtatctcattcgtatttcctgcctagacaagttatccatgaaagta
ttgtttgatcaagtttgcaggtgcacagtgattcttctttgggatcgcgc
tgaggcctacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51579268_51580416
seq2: B6Ng01-340E12.b_42_1171

seq1  GAATTCATAAGGTTTTTGATGGCCTGTCTTACAATTTTAGCAAGCTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGGTTTTTGATGGCCTGTCTTACAATTTTAGCAAGCTCTTG  50

seq1  CCATGACAGTGTTAACCATTCTAATGAACATATATGTCAAATACATGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAGTGTTAACCATTCTAATGAACATATATGTCAAATACATGTGA  100

seq1  CCAAAATGTACTTTGCCAGTATATGTCTGCTTAGCTGTATTTTTCATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTACTTTGCCAGTATATGTCTGCTTAGCTGTATTTTTCATGCT  150

seq1  CCAGATCAATAAGGAGTAAGCTAGTCTTTACAGGTCAGTTCTCAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCAATAAGGAGTAAGCTAGTCTTTACAGGTCAGTTCTCAAAAACA  200

seq1  AATACATCTTGTAAGTGTGTGAAAGTTACATTAGGAAAAAAAGTTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCTTGTAAGTGTGTGAAAGTTACATTAGGAAAAAAAGTTGTGTA  250

seq1  TGGTATCAACACTACCACATAGCCATCTGAATACAATGTTGACTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAACACTACCACATAGCCATCTGAATACAATGTTGACTTTTATT  300

seq1  TCATAGATAAATGTTGATGAGTAAAGAACAAAAGAAAACAGTTTCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATAAATGTTGATGAGTAAAGAACAAAAGAAAACAGTTTCAAGCT  350

seq1  CTTCAGCTCTAGTCCTGAACAATGGGAAGTCACTGAAGATCAAGGACGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTCTAGTCCTGAACAATGGGAAGTCACTGAAGATCAAGGACGAC  400

seq1  TTTGAACAAACTGACGCATCCAAAGCTTCATTGCTGCAGACTGCTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAAACTGACGCATCCAAAGCTTCATTGCTGCAGACTGCTGTCAC  450

seq1  CCAGACAAGAAGCCCAGTCCTGCCATTTAAGTGTTCACCTGCATGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAGAAGCCCAGTCCTGCCATTTAAGTGTTCACCTGCATGTGGAT  500

seq1  ACATGTGCCAATTGTGCAGAGTCTCTGCAGATCAAGAGGACAGAGGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCCAATTGTGCAGAGTCTCTGCAGATCAAGAGGACAGAGGAGCC  550

seq1  ACTGAACTGGAATTCCGGATGGCTATGCACTTTGTGGGTACAGAATTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTGGAATTCCGGATGGCTATGCACTTTGTGGGTACAGAATTGAA  600

seq1  CTCAGGTCCTCTGAGAAAGGACAAGTGTTAACCACTGAGCACTCTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCTCTGAGAAAGGACAAGTGTTAACCACTGAGCACTCTTCTTT  650

seq1  CTGGGTGGCATTTTTGGAAGTTCCTTGTCTCATAATGACATGTCAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGCATTTTTGGAAGTTCCTTGTCTCATAATGACATGTCAGAGTT  700

seq1  TTCCTTTTTTGTTTTTTAAATTTTATTTTACTATTTTTATTTATACTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTGTTTTTTAAATTTTATTTTACTATTTTTATTTATACTTTT  750

seq1  TCTTTTCCATTTTCAACCCTAGAATCCCACTGCATATATATTATGACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCATTTTCAACCCTAGAATCCCACTGCATATATATTATGACTTC  800

seq1  TAATGTAATGCTTTTATGAGATACTTGAGTGTGTGAACAAGTAAATGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAATGCTTTTATGAGATACTTGAGTGTGTGAACAAGTAAATGCCT  850

seq1  TTTTTTGCTTTCCCTTGGGCTCTTTTTCTTTTCTTGGTTCCACCCCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTTTCCCTTGGGCTCTTTTTCTTTTCTTGGTTCCACCCCCTCA  900

seq1  CACACACATTTTAATATGTTACTTTTTGTTTTATCTTATTTTCTTTTATT  950
      |||||||||||||||||||||||||    |||||||        ||| ||
seq2  CACACACATTTTAATATGTTACTTT---GTTTATCT-------ATTTCTT  940

seq1  TATTCTATTATTATTCTCTAGAAGCCTGTTTA-TTTTCTAAGGAGAGACA  999
      |||  ||| ||   |||| ||||||||||||| |||||||| ||||||||
seq2  TAT--TATCATATATCTC-AGAAGCCTGTTTATTTTTCTAA-GAGAGACA  986

seq1  GGGATAAATCCATGTAGAGTGGAATTGGAGGAATAAGGGAAGGGGAAACT  1049
       ||||||   |||||||||||||||||||||| || ||  | ||||||||
seq2  -GGATAA--TCATGTAGAGTGGAATTGGAGGATTACGG--ATGGGAAACT  1031

seq1  GTAAGAAGAAGGCAAAACCCCTA--TTTTCAATAAAAGAGAAAATAATGA  1097
      |||   || |||| |||||||||  |||||||| ||||||||||||||| 
seq2  GTA--GAGGAGGC-AAACCCCTATTTTTTCAAT-AAAGAGAAAATAATG-  1076

seq1  ACGACTGCTTTATCTAAGTGGGAAATCTCAAAG-CTCTG-CACAAT-AGA  1144
      ||||||||||||||| ||||||||||||| ||| ||||| |||||| |||
seq2  ACGACTGCTTTATCT-AGTGGGAAATCTCCAAGCCTCTGCCACAATAAGA  1125

seq1  CATGC  1149
      |||||
seq2  CATGC  1130