BAC Information

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BAC

Clone NameB6Ng01-341F05
Chromosome12 (Build37)
Map Location 44,391,791 - 44,531,274
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341F05.bB6Ng01-341F05.g
ACCGA124739GA124740
length1,1881,091
definitionB6Ng01-341F05.b B6Ng01-341F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,391,791 - 44,392,797)(44,530,190 - 44,531,274)
sequence
gaattctcctgagcactgtttctcagtcaattgtacccattcttttataa
aagttcactggtgctttgcaaaagacatgcagtttgcatctaagttacaa
tgtagtcatgccttaagctttgatggcataattgtccaaaggaaacatat
ccccaaagatttactgtgttttactataaacaaaataacaaataaacaaa
aactacataatgtcagactctagaagtttgaattagcctgggtacctaat
tcatgctgaaccaagtttcactgttttagattcgctgccagttgctattc
tttctttaaaacaaacacataaaaaaacaaaacaaaacaaaaacaaaaaa
cccaaaaaaactggatattttatttatttacatttcaaatgctatcccat
ttcctgtcccctcggaagccccttatttcattcccccttcccctgcttct
atgaaggtgcttccctacccacccactcccgcctcactgccctggcattc
ccctgcaatgttgcattgagtcttcacaggaccaagaccggatcctccca
ttgatgcctaacaaggccatcctctgctaagtatgtggcttgagccatgg
gtcactctgtgtgtactcttgggttggtggtttactccctgggagctctg
ggattctggttggttgatattgttgttccttttatctgctatttgagaag
gcacccacatacattgtcagcatcatcaccatctttccttgaatcttgaa
aatcactaatatttggaaaatgctttcttcagtgtatacagaggtttcct
aacaagattcatggtcaaaatttgggctctctttgtagttatttcagctg
acactcaaggtataattattgtccattcacaagtaatgcaacgtgatatc
agatagcttagtctaaatagttgaggatttttttttcaattccatcataa
ttaaatgagccttgtcctgctccagactgattatggctctcttctaactt
atcacattttgtgaactcttatatccccaacttatttgaaaagcagatat
gacaaatatttctccaacacatgacaaagctgtttgagcttttttatact
aagtaaattaatttttcttacaaaacattaataaatagagataacccaca
tatatttctatgagcaaatttattagcatgtaaaataa

gaattcttttatatgggaagattcacatttaatctgtgcaacactttctg
ttgtcagttaaatccattctaatggcataagagcgtacttcttcatgtag
gcatatattgaacacaagctaaaatatccagcctcactgactgaacaact
attggatttttttactttctgcttatataaagctattcttggattagctt
tatcccatgggatgggtctcaagttggggcacttattggttgtccatttc
ctcaacttgtgctccatctttattccggtgtgtactgtaggcaggacaag
tcttgggccaatggttttgtaggtgagttgatgtacccctccctggaagg
ggagtccaggctggactagaaggtggcaactgaagtctgcaaaatctcat
actgaaaaattctgtatcaaagtagagactttgtacaacgctgaagaaac
agtaactatctgttgagtgaagaaatgagtgaatacaacttaggaaatgt
tattatttatttgaatatttttctacagtgggaataaattatcttgctat
acttcagatttttgatatatttcatatgcttttaacaaaacattgagtat
atccacatcaatgcagctaccatgactatctcaccagtaattttatgaca
gtttccattcaatatcatcctcatttgagttaattagtttttaatttctc
tcactacagtatagttttgttggaactaaaaaatgtctccttaataaaat
tatgcacttggtgttacttttgaaaggatttcttatttaaatgtcacatt
ttaacaattataacaatgcttctattgtcaaatatttagttatttttata
ctattgttattatacatcagagtttgttcttttattagtgtttgggcatc
attttgtttctgaatattctaagatagcttatgagtgttactatttgaag
gttttggtacacatatgttttcaaacctgatgagtaaaccacaggtggtt
aaggtacatttaagattatgtgtaatatcaccatttaataataaacatta
aacaacttaaccagagggcttgccaaatttgtattttcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_44391791_44392797
seq2: B6Ng01-341F05.b_236_1236

seq1  ACAAATAAACAAAAACTACATAATGTCAGACTCTAGAAGTTTGAATTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAACAAAAACTACATAATGTCAGACTCTAGAAGTTTGAATTAGC  50

seq1  CTGGGTACCTAATTCATGCTGAACCAAGTTTCACTGTTTTAGATTCGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACCTAATTCATGCTGAACCAAGTTTCACTGTTTTAGATTCGCTG  100

seq1  CCAGTTGCTATTCTTTCTTTAAAACAAACACATAAAAAAACAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCTATTCTTTCTTTAAAACAAACACATAAAAAAACAAAACAAAA  150

seq1  CAAAAACAAAAAACCCAAAAAAACTGGATATTTTATTTATTTACATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAAAACCCAAAAAAACTGGATATTTTATTTATTTACATTTCA  200

seq1  AATGCTATCCCATTTCCTGTCCCCTCGGAAGCCCCTTATTTCATTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATCCCATTTCCTGTCCCCTCGGAAGCCCCTTATTTCATTCCCCC  250

seq1  TTCCCCTGCTTCTATGAAGGTGCTTCCCTACCCACCCACTCCCGCCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGCTTCTATGAAGGTGCTTCCCTACCCACCCACTCCCGCCTCAC  300

seq1  TGCCCTGGCATTCCCCTGCAATGTTGCATTGAGTCTTCACAGGACCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGCATTCCCCTGCAATGTTGCATTGAGTCTTCACAGGACCAAGA  350

seq1  CCGGATCCTCCCATTGATGCCTAACAAGGCCATCCTCTGCTAAGTATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCCTCCCATTGATGCCTAACAAGGCCATCCTCTGCTAAGTATGTG  400

seq1  GCTTGAGCCATGGGTCACTCTGTGTGTACTCTTGGGTTGGTGGTTTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCCATGGGTCACTCTGTGTGTACTCTTGGGTTGGTGGTTTACTC  450

seq1  CCTGGGAGCTCTGGGATTCTGGTTGGTTGATATTGTTGTTCCTTTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGCTCTGGGATTCTGGTTGGTTGATATTGTTGTTCCTTTTATCT  500

seq1  GCTATTTGAGAAGGCACCCACATACATTGTCAGCATCATCACCATCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGAGAAGGCACCCACATACATTGTCAGCATCATCACCATCTTTC  550

seq1  CTTGAATCTTGAAAATCACTAATATTTGGAAAATGCTTTCTTCAGTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTTGAAAATCACTAATATTTGGAAAATGCTTTCTTCAGTGTAT  600

seq1  ACAGAGGTTTCCTAACAAGATTCATGGTCAAAATTTGGGCTCTCTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTTTCCTAACAAGATTCATGGTCAAAATTTGGGCTCTCTTTGTA  650

seq1  GTTATTTCAGCTGACACTCAAGGTATAATTATTGTCCATTCACAAGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCAGCTGACACTCAAGGTATAATTATTGTCCATTCACAAGTAAT  700

seq1  GCAACGTGATATCAGATAGCTTAGTCTAAATAGTTGAGGATTTTTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGTGATATCAGATAGCTTAGTCTAAATAGTTGAGGATTTTTTTTTC  750

seq1  AATTCCATCATAATTAAAATGAGCCTTGTCCTGCTCCAGACTGATTATGG  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTCCATCATAATT-AAATGAGCCTTGTCCTGCTCCAGACTGATTATGG  799

seq1  CTCTCTTCTAACTTATCACATTTTGTGGAACTC-TATATCCCCAACTTAT  849
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CTCTCTTCTAACTTATCACATTTTGT-GAACTCTTATATCCCCAACTTAT  848

seq1  TTGAAAAGGCAAGAATATGACAAATA-TTCT-CAACACATGACAAAGCTG  897
      ||||||| |||   |||||||||||| |||| ||||||||||||||||||
seq2  TTGAAAA-GCA--GATATGACAAATATTTCTCCAACACATGACAAAGCTG  895

seq1  -TTGAGCTTTTTTTATACTAAGTATATTAATTTTTC-TACAAAACATTAA  945
       |||||| |||||||||||||||| ||||||||||| |||||||||||||
seq2  TTTGAGC-TTTTTTATACTAAGTAAATTAATTTTTCTTACAAAACATTAA  944

seq1  TAAATA-AGATAAAACCACATATATTCTAATGAAGCAAATATTATTAGCA  994
      |||||| |||| || |||||||||||   ||| ||||||| |||||||| 
seq2  TAAATAGAGAT-AACCCACATATATTTCTATG-AGCAAAT-TTATTAGC-  990

seq1  ATGTTAAAAATAA  1007
      ||||  |||||||
seq2  ATGT--AAAATAA  1001


seq1: chr12_44530190_44531274
seq2: B6Ng01-341F05.g_67_1157 (reverse)

seq1  GTTGGAAATACAAA-TTGGCAAGGCCCTCTGGGTAAG-TGTTTAATGTTT  48
      |||| ||||||||| ||||||| ||||||||| |||| ||||||||||||
seq2  GTTGAAAATACAAATTTGGCAA-GCCCTCTGGTTAAGTTGTTTAATGTTT  49

seq1  ATTATTAAAT-GTGATA-TACACATAATCTTAAATGTACCTTAACCACCT  96
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  ATTATTAAATGGTGATATTACACATAATCTTAAATGTACCTTAACCACCT  99

seq1  GT-GTTTACTCATCAGGTTTGAAAACATATGTGTACCAAAACC-TCAAAT  144
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGGTTTACTCATCAGGTTTGAAAACATATGTGTACCAAAACCTTCAAAT  149

seq1  AGTAACACTCATAAGCTATCTTAGAATATTCAGAAAC-AAATGATGCCCA  193
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTAACACTCATAAGCTATCTTAGAATATTCAGAAACAAAATGATGCCCA  199

seq1  AACACTAATAAAAGAACAAACTCTGATGTATAATAACAATAGTATAAAAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAATAAAAGAACAAACTCTGATGTATAATAACAATAGTATAAAAA  249

seq1  TAACTAAATATTTGACAATAGAAGCATTGTTATAATTGTTAAAATGTGAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAATATTTGACAATAGAAGCATTGTTATAATTGTTAAAATGTGAC  299

seq1  ATTTAAATAAGAAATCCTTTCAAAAGTAACACCAAGTGCATAATTTTATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAAGAAATCCTTTCAAAAGTAACACCAAGTGCATAATTTTATT  349

seq1  AAGGAGACATTTTTTAGTTCCAACAAAACTATACTGTAGTGAGAGAAATT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACATTTTTTAGTTCCAACAAAACTATACTGTAGTGAGAGAAATT  399

seq1  AAAAACTAATTAACTCAAATGAGGATGATATTGAATGGAAACTGTCATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAATTAACTCAAATGAGGATGATATTGAATGGAAACTGTCATAA  449

seq1  AATTACTGGTGAGATAGTCATGGTAGCTGCATTGATGTGGATATACTCAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGGTGAGATAGTCATGGTAGCTGCATTGATGTGGATATACTCAA  499

seq1  TGTTTTGTTAAAAGCATATGAAATATATCAAAAATCTGAAGTATAGCAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTAAAAGCATATGAAATATATCAAAAATCTGAAGTATAGCAAG  549

seq1  ATAATTTATTCCCACTGTAGAAAAATATTCAAATAAATAATAACATTTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATTCCCACTGTAGAAAAATATTCAAATAAATAATAACATTTCC  599

seq1  TAAGTTGTATTCACTCATTTCTTCACTCAACAGATAGTTACTGTTTCTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTATTCACTCATTTCTTCACTCAACAGATAGTTACTGTTTCTTC  649

seq1  AGCGTTGTACAAAGTCTCTACTTTGATACAGAATTTTTCAGTATGAGATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGTACAAAGTCTCTACTTTGATACAGAATTTTTCAGTATGAGATT  699

seq1  TTGCAGACTTCAGTTGCCACCTTCTAGTCCAGCCTGGACTCCCCTTCCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGACTTCAGTTGCCACCTTCTAGTCCAGCCTGGACTCCCCTTCCAG  749

seq1  GGAGGGGTACATCAACTCACCTACAAAACCATTGGCCCAAGACTTGTCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTACATCAACTCACCTACAAAACCATTGGCCCAAGACTTGTCCT  799

seq1  GCCTACAGTACACACCGGAATAAAGATGGAGCACAAGTTGAGGAAATGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGTACACACCGGAATAAAGATGGAGCACAAGTTGAGGAAATGGA  849

seq1  CAACCAATAAGTGCCCCAACTTGAGACCCATCCCATGGGATAAAGCTAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATAAGTGCCCCAACTTGAGACCCATCCCATGGGATAAAGCTAAT  899

seq1  CCAAGAATAGCTTTATATAAGCAGAAAGTAAAAAAATCCAATAGTTGTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATAGCTTTATATAAGCAGAAAGTAAAAAAATCCAATAGTTGTTC  949

seq1  AGTCAGTGAGGCTGGATATTTTAGCTTGTGTTCAATATATGCCTACATGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGAGGCTGGATATTTTAGCTTGTGTTCAATATATGCCTACATGA  999

seq1  AGAAGTACGCTCTTATGCCATTAGAATGGATTTAACTGACAACAGAAAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACGCTCTTATGCCATTAGAATGGATTTAACTGACAACAGAAAGT  1049

seq1  GTTGCACAGATTAAATGTGAATCTTCCCATATAAAAGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAGATTAAATGTGAATCTTCCCATATAAAAGAATTC  1091


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