BAC Information

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BAC

Clone NameB6Ng01-342F14
Chromosome12 (Build37)
Map Location 35,582,054 - 35,617,693
singlet/doubletdoublet
Overlap genenone
Upstream geneFerd3l, Twist1, Hdac9, 4921508M14Rik
Downstream genePrps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342F14.bB6Ng01-342F14.g
ACCGA125462GA125463
length1,117300
definitionB6Ng01-342F14.b B6Ng01-342F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,582,054 - 35,583,177)(35,617,395 - 35,617,693)
sequence
gaattctctctcccttacgggtttttattgagatgataatctacagatac
cgtatttctgatactgatttctgaatatgtgtttaaaaggaattagtgct
ctggagcagacattccacgtttcctatttgtgcttcaggcatagcagaca
aaggctggggtggctcacacctgtaatgtaagcacagaggggagtggcta
caagttcaagctcatcacaggtcacttagtgagtccgaggccaaccagga
caaggcactgcatcaagcaaaacacaacacaaatgcctgaacagaggaaa
gatgaagataaagtcctcaccaaagagcaggcatgaatgtcagcatccag
cacccttgtcacacgtcacatctccacgtttgctctccggccatttctga
ataaagtttgctcattgacacagaagaagccagaatctccacagggagaa
tcatatattaaaaaaaacaaacaaacaaactacagccttttcagtggatt
gcttactgatggaatttcagtctcagatgcatatggagtctgatggccct
gcaccagggccttgaagttaatattgcttatttttctaaaacaaaaacaa
aaacaaaaaagcctactgctccggggatatttactgcacttaccctgata
ggaaatgaggagcagaatctgagactccatcctgcaccctgaaacccaac
actggcaaggttgcttcaactgccgcatgactcggtcccatttcctctca
cttcatcccttctgttgctcacatgtagtgtttgttcactgggtttgggt
ttgactaactcctaaaatctataagcagaaagcatttatatttttatgtc
actgcctacttaacaaaaatgcttaataaagataacgagttcacactgtg
cagatcagcagtctaggcaaaaccagctcactcttcctgtggcttctgtc
ggagagcaagtgctacctctgtccttccatcaagttatgtcagggagggt
cattagctctggagtgagctacaagatgtgtgtaattgcccagttcctta
aatgcatcgctacatttcaaagtgtgtaaatgctgccttctgtataagaa
gaagaatgctgccttct

ttcagggcactaaggttctgagttcattctctaatgagacactggttggg
gagattccctcactccattttcctctgcccagaggcaaccagttttctgc
acttcaggttcctttgatgaagacctctgtttgtcagcagccatagcatc
tgtagcaggttttcctcctccccctcctcttcctcctccttcccatcctc
ctccccctccttctcaccttcctccttctctccttccttctcccctcctc
ttcctcctcctcctcctgctcctcttgcttttcctcctcctcctcctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35582054_35583177
seq2: B6Ng01-342F14.b_45_1161

seq1  GAATTCTCTCTCCCTTACGGGTTTTTATTGAGATGATAATCTACAGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCCTTACGGGTTTTTATTGAGATGATAATCTACAGATAC  50

seq1  CGTATTTCTGATACTGATTTCTGAATATGTGTTTAAAAGGAATTAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTCTGATACTGATTTCTGAATATGTGTTTAAAAGGAATTAGTGCT  100

seq1  CTGGAGCAGACATTCCACGTTTCCTATTTGTGCTTCAGGCATAGCAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGACATTCCACGTTTCCTATTTGTGCTTCAGGCATAGCAGACA  150

seq1  AAGGCTGGGGTGGCTCACACCTGTAATGTAAGCACAGAGGGGAGTGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGGTGGCTCACACCTGTAATGTAAGCACAGAGGGGAGTGGCTA  200

seq1  CAAGTTCAAGCTCATCACAGGTCACTTAGTGAGTCCGAGGCCAACCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAAGCTCATCACAGGTCACTTAGTGAGTCCGAGGCCAACCAGGA  250

seq1  CAAGGCACTGCATCAAGCAAAACACAACACAAATGCCTGAACAGAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACTGCATCAAGCAAAACACAACACAAATGCCTGAACAGAGGAAA  300

seq1  GATGAAGATAAAGTCCTCACCAAAGAGCAGGCATGAATGTCAGCATCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGATAAAGTCCTCACCAAAGAGCAGGCATGAATGTCAGCATCCAG  350

seq1  CACCCTTGTCACACGTCACATCTCCACGTTTGCTCTCCGGCCATTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGTCACACGTCACATCTCCACGTTTGCTCTCCGGCCATTTCTGA  400

seq1  ATAAAGTTTGCTCATTGACACAGAAGAAGCCAGAATCTCCACAGGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTGCTCATTGACACAGAAGAAGCCAGAATCTCCACAGGGAGAA  450

seq1  TCATATATTAAAAAAAACAAACAAACAAACTACAGCCTTTTCAGTGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTAAAAAAAACAAACAAACAAACTACAGCCTTTTCAGTGGATT  500

seq1  GCTTACTGATGGAATTTCAGTCTCAGATGCATATGGAGTCTGATGGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGATGGAATTTCAGTCTCAGATGCATATGGAGTCTGATGGCCCT  550

seq1  GCACCAGGGCCTTGAAGTTAATATTGCTTATTTTTCTAAAACAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGGCCTTGAAGTTAATATTGCTTATTTTTCTAAAACAAAAACAA  600

seq1  AAACAAAAAAGCCTACTGCTCCGGGGATATTTACTGCACTTACCCTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAGCCTACTGCTCCGGGGATATTTACTGCACTTACCCTGATA  650

seq1  GGAAATGAGGAGCAGAATCTGAGACTCCATCCTGCACCCTGAAACCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGGAGCAGAATCTGAGACTCCATCCTGCACCCTGAAACCCAAC  700

seq1  ACTGGCAAGGTTGCTTCAACTGCCGCATGACTCGGTCCCATTTCCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAAGGTTGCTTCAACTGCCGCATGACTCGGTCCCATTTCCTCTCA  750

seq1  CTTCATCCCTTCTGTTGCTCACATGTAGTGTTTGTTCACTGGGTTTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCCTTCTGTTGCTCACATGTAGTGTTTGTTCACTGGGTTTGGGT  800

seq1  TTGACTAACTCCTAAAATCTATAAGCAGAAAGCATTTATA-TTTTATGTC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGACTAACTCCTAAAATCTATAAGCAGAAAGCATTTATATTTTTATGTC  850

seq1  ACTGCCTACTTAACAAAAATGCTTAATAAAGATAACGAGTTCACACTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTACTTAACAAAAATGCTTAATAAAGATAACGAGTTCACACTGTG  900

seq1  CAGATCAGCAGTCTAGGCAAAACCAGCTCACTCTTCCTGTGGCTTCTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGCAGTCTAGGCAAAACCAGCTCACTCTTCCTGTGGCTTCTGTC  950

seq1  GGGAGAGCAAGTGCTACCTCTGTCCTTCCCATCAAGGTATGGTCAGGGAG  999
       |||||||||||||||||||||||||| |||||||| ||| |||||||| 
seq2  -GGAGAGCAAGTGCTACCTCTGTCCTT-CCATCAAGTTAT-GTCAGGGA-  996

seq1  GGGTCA-TAGCTCTGGAGTGAGGCTACAAGGATGTGTGTAAATTGCCCAG  1048
      |||||| |||||||||||||| ||||||| ||||||||| ||||||||||
seq2  GGGTCATTAGCTCTGGAGTGA-GCTACAA-GATGTGTGT-AATTGCCCAG  1043

seq1  TGCCTTAAATGCATCGCTACATTTCAAAAGTGTGAAAATGCTGCCTTCTG  1098
      | ||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TTCCTTAAATGCATCGCTACATTTC-AAAGTGTGTAAATGCTGCCTTCTG  1092

seq1  TATAAAGAAGAAGAATGCTGCCTTCT  1124
      ||| ||||||||||||||||||||||
seq2  TAT-AAGAAGAAGAATGCTGCCTTCT  1117


seq1: chr12_35617395_35617693
seq2: B6Ng01-342F14.g_76_374 (reverse)

seq1  GGAGGAGGAGGAGGAGGAAAAGCAAGAGGAGCAGGAGGAGGAGGAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAAAAGCAAGAGGAGCAGGAGGAGGAGGAGGAAG  50

seq1  AGGAGGGGAGAAGGAAGGAGAGAAGGAGGAAGGTGAGAAGGAGGGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGAGAAGGAAGGAGAGAAGGAGGAAGGTGAGAAGGAGGGGGAGG  100

seq1  AGGATGGGAAGGAGGAGGAAGAGGAGGGGGAGGAGGAAAACCTGCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGAAGGAGGAGGAAGAGGAGGGGGAGGAGGAAAACCTGCTACAG  150

seq1  ATGCTATGGCTGCTGACAAACAGAGGTCTTCATCAAAGGAACCTGAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGGCTGCTGACAAACAGAGGTCTTCATCAAAGGAACCTGAAGTG  200

seq1  CAGAAAACTGGTTGCCTCTGGGCAGAGGAAAATGGAGTGAGGGAATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACTGGTTGCCTCTGGGCAGAGGAAAATGGAGTGAGGGAATCTCC  250

seq1  CCAACCAGTGTCTCATTAGAGAATGAACTCAGAACCTTAGTGCCCTGAA  299
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGTGTCTCATTAGAGAATGAACTCAGAACCTTAGTGCCCTGAA  299


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