BAC Information

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BAC

Clone NameB6Ng01-344E07
Chromosome12 (Build37)
Map Location 25,585,743 - 25,652,568
singlet/doubletdoublet
Overlap geneMboat2
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719
Downstream geneEG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344E07.bB6Ng01-344E07.g
ACCGA126804GA126805
length1,1751,141
definitionB6Ng01-344E07.b B6Ng01-344E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,651,376 - 25,652,568)(25,585,743 - 25,586,885)
sequence
gaattcactgtgtgcacttgtgtacatatgtgtacacacacacacacaca
cacacacacacacacacacagggataacaaccctgggctagagcatgtct
agctttatcttgctcagccctcaggacctactccctgctagcctaataag
ccatatatcgctctgaaagttatgacaaggattcaagcataaataaaaca
tacttaaacagtaagagagatatagtgtagaggaattttagtccatcaag
gctgctctggctgaaatacagacacacccttagtacatacctttaatccc
aaacaacaaaggtcaaactagttggtagaaggatgcaactatgtttgaaa
gtggcttctagccaggtgtggtggcgcacacctttaatcccagcacttgg
gaggcagaggcaggtggctttctgagtttgaggccagcctggtctacaaa
gtgagttctaggacagccagggctatatagagaaaccctgtctcgaaaaa
ccaaaaaaaaaaaaaaaaaaaaaaaagaaagaaggaaagaaagtgacttc
taattgaagggcagacaaagtggtgagtcagagaaagatttgacagaatg
agtcagagataggatacacccccactctcacgagaagagacaggaagaag
tggcagaagatcgctgggcagagagagaggcagcacttttactaggaggg
ttttacagagacaggttgaaaagagaacaagccagagaatgagaagaagc
cagaagattagaacagattgccagagttagtttgaggccaagcagaacaa
ttcagtcaaaggccaagagagaagccagatccaatgagtcagcttggaga
ggagtttgagccagaagagctaaattgagcccggcagccacagttcagaa
gaataagaaagggtgagcttattcagtagtaagtctcagaggctgaaaat
attccaggcctggataagattgtacagaagctagaagcttccaggactag
gcccaggttagcagactgagacagtagccttggagatgacatacatcagg
caataaagttacatttacatataaagtagaatatctaccattaggaaatg
cagtacttcatgactttaaaactaagctgaatcttgctcagcacagcaga
tgactagcacaaacatataggctag
gaattcactcagtcttaatgtaaaatacattatgaagaaagaaccatgca
ctgtcctatccagttaaataggtaaggaaaaggtatatcagaaaaatctc
aaatgcgggaaaccaggcctgtggtgtaattctagcactggggaaactgg
ggcaggagggtggttagtttgaggctagtaaatttgagaccatcttggct
atatagtaagaccctgtctcaccaaatacatccatccatacgtgcccgcg
cgcgttcatacacacatacacacacacagcaacagagattaaatgaaaat
atcatagtaccaaatggcaaaagaagtccataaggaggaatagagaagac
ctgggacatagctaaattagtgggcaaatgtcagtgacatcagacatgat
aaatctcacccagtgagattggtgaggcttcaactgtattctattcaatt
caatagaatacaattaattatatttctatatacgataatgttccaaaatg
aaagcataaaaatggtttcatgcacatagaatctaaaagaataaataaaa
atagttaataaatttaacactcacttgcaaactactagcaaactcccttt
agagcactggttctcaaccttcctaaagctgtgaccctttaatacagttc
ctcttgttgtgttgacccgaatcataaattactttgttgctgattcataa
ttataatttcctactgttatgacttgtagtataaatatctgtgttttctg
atggccttttggagatctcaactcataggttgagtaccactcctttacaa
agagtaaagattaaatacagtcttccatatttgtgagttgggagactctg
tgttgttaaaactgtatattgtgaagttggcagctggctattcttctcag
ttgatccagtgatgtgtaggtttagtacagtcctcagtgcagttactaac
aaagactcttgtcaagagtttctgggtatgtggcaaataagacccagcct
aactatttgaaaaggacaccagaccaggatctgcacatcgcagtttctcc
acttactctgatgtaggatcaggacacttggtggttttggtgtgagacag
catgcacattcattagaaaagattggaaagtataaactaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25651376_25652568
seq2: B6Ng01-344E07.b_47_1221 (reverse)

seq1  CTAGACTATATGTTTGTGCTAGTTCAATCTGCTTGTTGCTGGAGCCAAGT  50
      |||| ||||||||||||||||||   |||||||   |||| ||| |||| 
seq2  CTAGCCTATATGTTTGTGCTAGT--CATCTGCT--GTGCT-GAG-CAAGA  44

seq1  ATCAGCTTTAGTTTTTAAAGTCATGAAGTACTGCATTTTCTTAATTGGTA  100
       ||||| |||| |||||||||||||||||||||||||| ||  | |||| 
seq2  TTCAGC-TTAG-TTTTAAAGTCATGAAGTACTGCATTTCCT--AATGGT-  89

seq1  AGATATTCTACTTTATATTGTAAATGTAACTTTTATTTGCCTGATGTAAT  150
      ||||||||||||||||| |||||||||||||||   ||||||||||||  
seq2  AGATATTCTACTTTATA-TGTAAATGTAACTTT--ATTGCCTGATGTA--  134

seq1  TGTCATCTCCAAGGCTTACTGTCTCAGTCTGCTAACCTGGGCCTAGTCCT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTCATCTCCAAGGC-TACTGTCTCAGTCTGCTAACCTGGGCCTAGTCCT  183

seq1  GGAAGCTTCTAGCTTCTGTACAATCTTATCCAGGCCTGGAATATTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTCTAGCTTCTGTACAATCTTATCCAGGCCTGGAATATTTTCAG  233

seq1  CCTCTGAGACTTACTACTGAATAAGCTCACCCTTTCTTATTCTTTCTGAA  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTCTGAGACTTACTACTGAATAAGCTCACCCTTTCTTATTC-TTCTGAA  282

seq1  CTGTGGCTGCCGGGCTCAATTTAGCTCTTCTGGCTCAAACTCCTCTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGCCGGGCTCAATTTAGCTCTTCTGGCTCAAACTCCTCTCCAA  332

seq1  GCTGACTCATTGGATCTGGCTTCTCTCTTGGCCTTTGACTGAATTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCATTGGATCTGGCTTCTCTCTTGGCCTTTGACTGAATTGTTCT  382

seq1  GCTTGGCCTCAAACTAACTCTGGCAATCTGTTCTAATCTTCTGGCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCTCAAACTAACTCTGGCAATCTGTTCTAATCTTCTGGCTTCTT  432

seq1  CTCATTCTCTGGCTTGTTCTCTTTTCAACCTGTCTCTGTAAAACCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTCTGGCTTGTTCTCTTTTCAACCTGTCTCTGTAAAACCCTCCT  482

seq1  AGTAAAAGTGCTGCCTCTCTCTCTGCCCAGCGATCTTCTGCCACTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTGCTGCCTCTCTCTCTGCCCAGCGATCTTCTGCCACTTCTTC  532

seq1  CTGTCTCTTCTCGTGAGAGTGGGGGTGTATCCTATCTCTGACTCATTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTCTCGTGAGAGTGGGGGTGTATCCTATCTCTGACTCATTCTG  582

seq1  TCAAATCTTTCTCTGACTCACCACTTTGTCTGCCCTTCAATTAGAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTTTCTCTGACTCACCACTTTGTCTGCCCTTCAATTAGAAGTCA  632

seq1  CTTTCTTTCCTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCCTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCG  682

seq1  AGACAGGGTTTCTCTATATAGCCCTGGCTGTCCTAGAACTCACTTTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTATATAGCCCTGGCTGTCCTAGAACTCACTTTGTAG  732

seq1  ACCAGGCTGGCCTCAAACTCAGAAAGCCACCTGCCTCTGCCTCCCAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCAAACTCAGAAAGCCACCTGCCTCTGCCTCCCAAGTG  782

seq1  CTGGGATTAAAGGTGTGCGCCACCACACCTGGCTAGAAGCCACTTTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGCGCCACCACACCTGGCTAGAAGCCACTTTCAAA  832

seq1  CATAGTTGCATCCTTCTACCAACTAGTTTGACCTTTGTTGTTTGGGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTGCATCCTTCTACCAACTAGTTTGACCTTTGTTGTTTGGGATTA  882

seq1  AAGGTATGTACTAAGGGTGTGTCTGTATTTCAGCCAGAGCAGCCTTGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGTACTAAGGGTGTGTCTGTATTTCAGCCAGAGCAGCCTTGATG  932

seq1  GACTAAAATTCCTCTACACTATATCTCTCTTACTGTTTAAGTATGTTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAATTCCTCTACACTATATCTCTCTTACTGTTTAAGTATGTTTTA  982

seq1  TTTATGCTTGAATCCTTGTCATAACTTTCAGAGCGATATATGGCTTATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTGAATCCTTGTCATAACTTTCAGAGCGATATATGGCTTATTA  1032

seq1  GGCTAGCAGGGAGTAGGTCCTGAGGGCTGAGCAAGATAAAGCTAGACATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCAGGGAGTAGGTCCTGAGGGCTGAGCAAGATAAAGCTAGACATG  1082

seq1  CTCTAGCCCAGGGTTGTTATCCCTGTGTGTGTGTGTGTGTGTGTGTGTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCCAGGGTTGTTATCCCTGTGTGTGTGTGTGTGTGTGTGTGTGT  1132

seq1  GTGTGTGTGTACACATATGTACACAAGTGCACACAGTGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTACACATATGTACACAAGTGCACACAGTGAATTC  1175

seq1: chr12_25585743_25586885
seq2: B6Ng01-344E07.g_65_1205

seq1  GAATTCACTCAGTCTTAATGTAAAATACATTATGAAGAAAGAACCATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGTCTTAATGTAAAATACATTATGAAGAAAGAACCATGCA  50

seq1  CTGTCCTATCCAGTTAAATAGGTAAGGAAAAGGTATATCAGAAAAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATCCAGTTAAATAGGTAAGGAAAAGGTATATCAGAAAAATCTC  100

seq1  AAATGCGGGAAACCAGGCCTGTGGTGTAATTCTAGCACTGGGGAAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCGGGAAACCAGGCCTGTGGTGTAATTCTAGCACTGGGGAAACTGG  150

seq1  GGCAGGAGGGTGGTTAGTTTGAGGCTAGTAAATTTGAGACCATCTTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGGGTGGTTAGTTTGAGGCTAGTAAATTTGAGACCATCTTGGCT  200

seq1  ATATAGTAAGACCCTGTCTCACCAAATACATCCATCCATACGTGCCCGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTAAGACCCTGTCTCACCAAATACATCCATCCATACGTGCCCGCG  250

seq1  CGCGTTCATACACACATACACACACACAGCAACAGAGATTAAATGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCATACACACATACACACACACAGCAACAGAGATTAAATGAAAAT  300

seq1  ATCATAGTACCAAATGGCAAAAGAAGTCCATAAGGAGGAATAGAGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTACCAAATGGCAAAAGAAGTCCATAAGGAGGAATAGAGAAGAC  350

seq1  CTGGGACATAGCTAAATTAGTGGGCAAATGTCAGTGACATCAGACATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACATAGCTAAATTAGTGGGCAAATGTCAGTGACATCAGACATGAT  400

seq1  AAATCTCACCCAGTGAGATTGGTGAGGCTTCAACTGTATTCTATTCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACCCAGTGAGATTGGTGAGGCTTCAACTGTATTCTATTCAATT  450

seq1  CAATAGAATACAATTAATTATATTTCTATATACGATAATGTTCCAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAATACAATTAATTATATTTCTATATACGATAATGTTCCAAAATG  500

seq1  AAAGCATAAAAATGGTTTCATGCACATAGAATCTAAAAGAATAAATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAAAAATGGTTTCATGCACATAGAATCTAAAAGAATAAATAAAA  550

seq1  ATAGTTAATAAATTTAACACTCACTTGCAAACTACTAGCAAACTCCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAATAAATTTAACACTCACTTGCAAACTACTAGCAAACTCCCTTT  600

seq1  AGAGCACTGGTTCTCAACCTTCCTAAAGCTGTGACCCTTTAATACAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGGTTCTCAACCTTCCTAAAGCTGTGACCCTTTAATACAGTTC  650

seq1  CTCTTGTTGTGTTGACCCGAATCATAAATTACTTTGTTGCTGATTCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTGTGTTGACCCGAATCATAAATTACTTTGTTGCTGATTCATAA  700

seq1  TTATAATTTCCTACTGTTATGACTTGTAGTATAAATATCTGTGTTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTCCTACTGTTATGACTTGTAGTATAAATATCTGTGTTTTCTG  750

seq1  ATGGCCTTTTGGAGATCTCAACTCATAGGTTGAGTACCACTCCTTTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTTTGGAGATCTCAACTCATAGGTTGAGTACCACTCCTTTACAA  800

seq1  AGAGTAAAGATTAAATACAGTCTTCCATATTTGTGAGTTGGGAGACTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGATTAAATACAGTCTTCCATATTTGTGAGTTGGGAGACTCTG  850

seq1  TGTTGTTAAAACTGTATATTGTGAAGTTGGCAGCTGGCTATTCTTCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAAAACTGTATATTGTGAAGTTGGCAGCTGGCTATTCTTCTCAG  900

seq1  TTGATCCAGTGATGTGTAGGTTTAGTACAGTCCTCAGTGCAGTTACTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCAGTGATGTGTAGGTTTAGTACAGTCCTCAGTGCAGTTACTAAC  950

seq1  AAAGACTCTTGTCAAGAGTTTCTGGGTATGTGGCAAAATAAGGACCCAGC  1000
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  AAAGACTCTTGTCAAGAGTTTCTGGGTATGTGGC-AAATAA-GACCCAGC  998

seq1  CTAACTATTTGAAAAAGGACACCAGACCAAGGATCTGCACATCGCAGTTT  1050
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  CTAACTATTTG-AAAAGGACACCAGACC-AGGATCTGCACATCGCAGTTT  1046

seq1  CTCCACTTACTCTGATGTAGGAATCAGGACACTT-GTGGTTT--GTGTGA  1097
      ||||||||||||||||||||| |||||||||||| |||||||  ||||||
seq2  CTCCACTTACTCTGATGTAGG-ATCAGGACACTTGGTGGTTTTGGTGTGA  1095

seq1  GGACAGGCATGCACA-TCATTAGAAAAGAT--GAGAGTATAAAACTAAA  1143
       |||| ||||||||| ||||||||||||||  || ||||| ||||||||
seq2  -GACA-GCATGCACATTCATTAGAAAAGATTGGAAAGTAT-AAACTAAA  1141