BAC Information

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BAC

Clone NameB6Ng01-344J14
Chromosome12 (Build37)
Map Location 41,455,342 - 41,564,751
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344J14.bB6Ng01-344J14.g
ACCGA127043GA127044
length1,1351,186
definitionB6Ng01-344J14.b B6Ng01-344J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,455,342 - 41,456,485)(41,563,558 - 41,564,751)
sequence
gaattcactgaagtatgaacgggcccatctgagattctttgacctgcttc
cagaaaatgttggaatgcctgtatacgcttccccacagtgacctcagaaa
tgctctttcctttccacacgcttgacattgctcagtgctctgatgtcctt
cgtttgcctctactttaaagctggcaggttcctctgccccatgccttccc
tatcttggcagttcttactggccttattgatctctatatcccttggtcct
ttggagactaaggaagctttggccatgagatcctctccttgaggctatct
aaattctcccccaagacaggtagaggccaagtttgtttcttctagttctt
gaaaggcctgttggactctgaatccacctgtcagtttcagaaaggaactg
gaagagtcagggctatgtgcttgttcataagctgtagtagaaaatggact
gggagggcactcttaaatccaaaggctcactagatgagcctttggtacat
tggccttgttgtcacagtacactgacaatgtgtgttcctaagaattgagt
taccttaaacaatcaagaaggccttcattgctggagtccattgctcgact
gagtgtctgtgttcagctgtctaagcatgagtcaagcaggttcctacctg
tctggaaatcccactcttatagaaggtagcagaaaaggttacagcagata
tctgttggctgcttacaccattcttagtactggaaatgcagttgggtcat
gttcatctctaccctctttggattttacagtcaaccttggacgtagaaac
ctttaggtaaaaaacaagtgcttctgtgaggtaggaacatgtgggaggca
tggtaatccctcctggacaacaccatctagttggagaactaaacaatgag
caggagctctggggagtagaggagatactgaaaatacttttaagtaaatg
ccatcctaaactagagaggctagtctcggtgaggggactgggtagcagtg
catgtaggagtcagcttttaccagtagagcactgttcctgagagggctgg
actctatgaagcattacctttcctttctgttgaaaaggtgaatatgctga
tcttttggaatgagacccacccaaaaaagatcaca

gaattccaaatgtgtttagatgctgagaaatagatggaaaatatagtcat
cagcctatttgtagaaatgtctgaacaaatggccatctaaaggaggtgat
gaggcaaagggcactctcttatttcaactgtgtggcagaagtaccaagga
cagggttgagggtgccacactgaccagtcctgtcaggaaaggatgagttc
caaatggacagattacactaagtaagtcctgagaaaaccacttggactgc
tgataacgtcattgttactttgcaatccatctgctccaggcatcacggtg
taggaatatagacagctctgctaggaagcagggcaggacacacaaggtta
tgaaacactccacaatgaagtttctaatagtaaaaccagcgttcccgctt
gcttcccgtgcagatactgccatctgacggacgcagtgagaattgccacg
ttttattcctccaagttactgctttgatttaatggggtggaaatatttta
aacattatttttttttctctatttcttttatatttgctgggtagttttct
ttagtaaagttggtaaaaataacagcacatccctagtttctcctggtgaa
gatcaatgcttgacttacaacattaaagctaattccatgctttaaaataa
ttttggctaggccctcactaattttcatctccctttgggaagttttaatg
ttaatctatcagtgtaccaaaatggtaatacagcctagttcttaatgggg
gcaattaaagtgcactttactgggacatttcattagtgagtcttgattca
ttagcctgcgagactgctatttttgaggcctgaccctgagaggcaaacgg
gtgactttgcaagtccctgcacccacagtggaggaagcgacatttaatct
gctcttcctggtctgtgtgttgctaattggcttcttagctctatgcatgc
atttggtgtgtgcatctatttgtgtgtgcttgaccttgaggcggccccac
tccattatgcgtctgatcgcaatgcttgcatggcatttaatggtacagag
cctgtgtgagtgaccaccacaacagttgagctggctgatattgagctttg
tgaagagaacatgatggggtctgtggaatcaatctgaaggagtagctact
tcatgggtgaactagtgcttaattggcaactttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41455342_41456485
seq2: B6Ng01-344J14.b_46_1180

seq1  GAATTCACTGAAGTATGAACGGGCCCATCTGAGATTCTTTGACCTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGTATGAACGGGCCCATCTGAGATTCTTTGACCTGCTTC  50

seq1  CAGAAAATGTTGGAATGCCTGTATACGCTTCCCCACAGTGACCTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTTGGAATGCCTGTATACGCTTCCCCACAGTGACCTCAGAAA  100

seq1  TGCTCTTTCCTTTCCACACGCTTGACATTGCTCAGTGCTCTGATGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTCCTTTCCACACGCTTGACATTGCTCAGTGCTCTGATGTCCTT  150

seq1  CGTTTGCCTCTACTTTAAAGCTGGCAGGTTCCTCTGCCCCATGCCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGCCTCTACTTTAAAGCTGGCAGGTTCCTCTGCCCCATGCCTTCCC  200

seq1  TATCTTGGCAGTTCTTACTGGCCTTATTGATCTCTATATCCCTTGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGCAGTTCTTACTGGCCTTATTGATCTCTATATCCCTTGGTCCT  250

seq1  TTGGAGACTAAGGAAGCTTTGGCCATGAGATCCTCTCCTTGAGGCTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACTAAGGAAGCTTTGGCCATGAGATCCTCTCCTTGAGGCTATCT  300

seq1  AAATTCTCCCCCAAGACAGGTAGAGGCCAAGTTTGTTTCTTCTAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCCCCAAGACAGGTAGAGGCCAAGTTTGTTTCTTCTAGTTCTT  350

seq1  GAAAGGCCTGTTGGACTCTGAATCCACCTGTCAGTTTCAGAAAGGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCTGTTGGACTCTGAATCCACCTGTCAGTTTCAGAAAGGAACTG  400

seq1  GAAGAGTCAGGGCTATGTGCTTGTTCATAAGCTGTAGTAGAAAATGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCAGGGCTATGTGCTTGTTCATAAGCTGTAGTAGAAAATGGACT  450

seq1  GGGAGGGCACTCTTAAATCCAAAGGCTCACTAGATGAGCCTTTGGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCACTCTTAAATCCAAAGGCTCACTAGATGAGCCTTTGGTACAT  500

seq1  TGGCCTTGTTGTCACAGTACACTGACAATGTGTGTTCCTAAGAATTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTTGTCACAGTACACTGACAATGTGTGTTCCTAAGAATTGAGT  550

seq1  TACCTTAAACAATCAAGAAGGCCTTCATTGCTGGAGTCCATTGCTCGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAAACAATCAAGAAGGCCTTCATTGCTGGAGTCCATTGCTCGACT  600

seq1  GAGTGTCTGTGTTCAGCTGTCTAAGCATGAGTCAAGCAGGTTCCTACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGTGTTCAGCTGTCTAAGCATGAGTCAAGCAGGTTCCTACCTG  650

seq1  TCTGGAAATCCCACTCTTATAGAAGGTAGCAGAAAAGGTTACAGCAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATCCCACTCTTATAGAAGGTAGCAGAAAAGGTTACAGCAGATA  700

seq1  TCTGTTGGCTGCTTACACCATTCTTAGTACTGGAAATGCAGTTGGGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGCTGCTTACACCATTCTTAGTACTGGAAATGCAGTTGGGTCAT  750

seq1  GTTCATCTCTACCCTCTTTGGATTTTACAGTCAACCTTGGACGTAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTCTACCCTCTTTGGATTTTACAGTCAACCTTGGACGTAGAAAC  800

seq1  CTTTAGGTAAAAAACAAGTGCTTCTGTGAGGTAGGAACATGTGGGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTAAAAAACAAGTGCTTCTGTGAGGTAGGAACATGTGGGAGGCA  850

seq1  TGGTAATCCCTCCTGGACAACACCATCTAGTTGGAGAACTAAACAATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATCCCTCCTGGACAACACCATCTAGTTGGAGAACTAAACAATGAG  900

seq1  CAGGAGCTCTGGGGAGTAGAGGAGATACTGAAAATACTTTTAAGTAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTCTGGGGAGTAGAGGAGATACTGAAAATACTTTTAAGTAAATG  950

seq1  CCATCCTAAACTAGAGAGGCTAGTCTCGGTGAGGGGACTGGGTAGCAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTAAACTAGAGAGGCTAGTCTCGGTGAGGGGACTGGGTAGCAGTG  1000

seq1  CATGTAGGAAGTCAGCTTTTACCAGTAGAGCACTGTTCCTGAGAGGGGCT  1050
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  CATGTAGG-AGTCAGCTTTTACCAGTAGAGCACTGTTCCTGAGA-GGGCT  1048

seq1  GGACTCTATGAAAAGCAATTAACCTTCCTTTTCTGTTTGAAAAGGTG-AT  1099
      ||||||||||  |||||  | ||||| | |||||| ||||||||||| ||
seq2  GGACTCTATG--AAGCA--TTACCTTTCCTTTCTG-TTGAAAAGGTGAAT  1093

seq1  ATGCTTGATCTTTTGAAATGGAGAACCCACCCAGACAAGATCACA  1144
      |||| |||||||||| ||| ||| ||||||||| | |||||||||
seq2  ATGC-TGATCTTTTGGAAT-GAG-ACCCACCCAAAAAAGATCACA  1135


seq1: chr12_41563558_41564751
seq2: B6Ng01-344J14.g_66_1251 (reverse)

seq1  AGCAAAGTTGCCAATTAAGCCACTAGTTCACACAATGAAAGTAGCTACTC  50
      ||||||||||||||||||| ||||||||||| | ||| ||||||||||||
seq2  AGCAAAGTTGCCAATTAAG-CACTAGTTCAC-CCATG-AAGTAGCTACTC  47

seq1  C-TCAGATTGATTCCACAGACCCCATCCATTGTCTCCTTCACAAAGCTCA  99
      | |||||||||||||||||||||||| |||  ||| ||||||||||||||
seq2  CTTCAGATTGATTCCACAGACCCCAT-CATGTTCT-CTTCACAAAGCTCA  95

seq1  TATTCAGCCAGCTCAACTGTTGTTGGTGGTCACTCACACAGGCTCTTGTA  149
         ||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  ATATCAGCCAGCTCAACTGTTG-TGGTGGTCACTCACACAGGCTC-TGTA  143

seq1  CCATTAAATGCCATGCAAGCATTGCGATCAGACGCATAATGGAGTGGGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCATTAAATGCCATGCAAGCATTGCGATCAGACGCATAATGGAGTGGGG-  192

seq1  CCGCCTCAAGGTCAAGCACACACAAATAAGATGCACACACCAAATGCATG  249
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCGCCTCAAGGTCAAGCACACACAAAT-AGATGCACACACCAAATGCATG  241

seq1  CATAGAGCTAAGAAGCCAATTAGCAACACACAGACCAGGAAGAGCAGATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGCTAAGAAGCCAATTAGCAACACACAGACCAGGAAGAGCAGATT  291

seq1  AAATGTCGCTTCCTCCACTGTGGGTGCAGGGACTTGCAAAGTCACCCGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCGCTTCCTCCACTGTGGGTGCAGGGACTTGCAAAGTCACCCGTT  341

seq1  TGCCTCTCAGGGTCAGGCCTCAAAAATAGCAGTCTCGCAGGCTAATGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCAGGGTCAGGCCTCAAAAATAGCAGTCTCGCAGGCTAATGAAT  391

seq1  CAAGACTCACTAATGAAATGTCCCAGTAAAGTGCACTTTAATTGCCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTCACTAATGAAATGTCCCAGTAAAGTGCACTTTAATTGCCCCCA  441

seq1  TTAAGAACTAGGCTGTATTACCATTTTGGTACACTGATAGATTAACATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACTAGGCTGTATTACCATTTTGGTACACTGATAGATTAACATTA  491

seq1  AAACTTCCCAAAGGGAGATGAAAATTAGTGAGGGCCTAGCCAAAATTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCCAAAGGGAGATGAAAATTAGTGAGGGCCTAGCCAAAATTATT  541

seq1  TTAAAGCATGGAATTAGCTTTAATGTTGTAAGTCAAGCATTGATCTTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCATGGAATTAGCTTTAATGTTGTAAGTCAAGCATTGATCTTCAC  591

seq1  CAGGAGAAACTAGGGATGTGCTGTTATTTTTACCAACTTTACTAAAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAACTAGGGATGTGCTGTTATTTTTACCAACTTTACTAAAGAAA  641

seq1  ACTACCCAGCAAATATAAAAGAAATAGAGAAAAAAAAATAATGTTTAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCAGCAAATATAAAAGAAATAGAGAAAAAAAAATAATGTTTAAAA  691

seq1  TATTTCCACCCCATTAAATCAAAGCAGTAACTTGGAGGAATAAAACGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACCCCATTAAATCAAAGCAGTAACTTGGAGGAATAAAACGTGG  741

seq1  CAATTCTCACTGCGTCCGTCAGATGGCAGTATCTGCACGGGAAGCAAGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCACTGCGTCCGTCAGATGGCAGTATCTGCACGGGAAGCAAGCG  791

seq1  GGAACGCTGGTTTTACTATTAGAAACTTCATTGTGGAGTGTTTCATAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGCTGGTTTTACTATTAGAAACTTCATTGTGGAGTGTTTCATAACC  841

seq1  TTGTGTGTCCTGCCCTGCTTCCTAGCAGAGCTGTCTATATTCCTACACCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTCCTGCCCTGCTTCCTAGCAGAGCTGTCTATATTCCTACACCG  891

seq1  TGATGCCTGGAGCAGATGGATTGCAAAGTAACAATGACGTTATCAGCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTGGAGCAGATGGATTGCAAAGTAACAATGACGTTATCAGCAGT  941

seq1  CCAAGTGGTTTTCTCAGGACTTACTTAGTGTAATCTGTCCATTTGGAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGTTTTCTCAGGACTTACTTAGTGTAATCTGTCCATTTGGAACT  991

seq1  CATCCTTTCCTGACAGGACTGGTCAGTGTGGCACCCTCAACCCTGTCCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTCCTGACAGGACTGGTCAGTGTGGCACCCTCAACCCTGTCCTT  1041

seq1  GGTACTTCTGCCACACAGTTGAAATAAGAGAGTGCCCTTTGCCTCATCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTCTGCCACACAGTTGAAATAAGAGAGTGCCCTTTGCCTCATCAC  1091

seq1  CTCCTTTAGATGGCCATTTGTTCAGACATTTCTACAAATAGGCTGATGAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGATGGCCATTTGTTCAGACATTTCTACAAATAGGCTGATGAC  1141

seq1  TATATTTTCCATCTATTTCTCAGCATCTAAACACATTTGGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCCATCTATTTCTCAGCATCTAAACACATTTGGAATTC  1186


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