BAC Information

Click to search

BAC

Clone NameB6Ng01-346K03
Chromosome12 (Build37)
Map Location 81,868,994 - 82,028,091
singlet/doubletdoublet
Overlap gene4933426M11Rik
Upstream geneRad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
Downstream geneSfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346K03.bB6Ng01-346K03.g
ACCGA128475GA128476
length1,124606
definitionB6Ng01-346K03.b B6Ng01-346K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,868,994 - 81,870,126)(82,027,486 - 82,028,091)
sequence
gaattccacatgtgtgctgtgcttgcacctgcacctacatacatgttcac
acgtatcaaacacaccacatgcagttaaaaaaaaaaacaaaacacctaca
tcatagagctgtcagcaaggacacctggagggaacattactatgaatcca
gtgttgttgttggctgcaggtgatctcgctggcctgcaagccccaggttt
ccttgtttccacttccttagctctgaatttatcaccacacccagcttgta
aactatgggttctgaggaccaaactcaggtccttaatgcttaccacggca
agcactttactgatttaccccccatccttacttagccgaagaccagtcat
gtggaagtagagccacactcacgattccattgtaacacccagactttcga
aacgctctgacttcagtcatacacaaaggcataggggtctagggatttag
taaatatgaatgttacataatactaaatatgaactcaatagaacgttagt
aaagtggaaaaaaatgacttctggctaccttgagccgctcagatttgagt
gtctcctgggtgccaaccactgggacagcagtggcagagcccattaccat
ggagactgaagtgggagaatgtactataaatcaaccatactgctcagtga
gcatctaatcaggtaagctctgggcaggcctgagtcgaggctgtggcagt
gaggacagaggggaacatctaaagtagatgtgagaggttggggatatagc
tcagtggtagagaacttgcctactgtgtatgaggtcctggatccagtctt
cagtaatgaaaacaaaaaagcatatatgagagacaacacacacggttggt
aagtgactctgggggcgcttaaaactccccaggtttctggactatacatc
ggagactgagttggggtggagaggaggtagggccatttatcagattggaa
atgaagatgaaaggcaaagtcggtgagttccactttcagtgtgctgagtg
gcatacctatcaagtccacttagggataattgtatcagagtctacaacag
ttgaaatcccagtttgtcttgtctgatcttaactcaaggaatattcctta
agcctctcgaatagccattgatca
gaattccagactatccagggtaagaccttgtctaaaaaaagatgagacat
tgaagttctctaaaatggattcattacattcctttagaaccagaactcaa
ctcgggaggcagaggcaggtggatctctgaatttgaggccagcctggtcc
acagagtgagttccaggacagccagggctatacagagaaaccctgcctca
aaaacaaacaaacaaacaaacaaacaaacaaacaacaaaaatagagcaag
aactgttgaagcacttgatgccctagtgggttatctcaaagatgagacaa
tcataaaaccgctttggctaggcctctggaacactgcctatctcttgcca
cgtcatgctctgtgctaccgcaggactttccaccaagaaagaatattatc
agacagagccctttgacccagggcctgaaccatgaacctagtgaatctct
tgtctttgtaagttgcctagcttttgttgttgctattagcaacagaaaat
ggacaaggacctgtgcttacagtcccgtgaaattagtgtttttttttttt
ttttggttttgttttgttttttttgtttttttttttggtttttcgagaca
gggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81868994_81870126
seq2: B6Ng01-346K03.b_47_1170

seq1  GAATTCCACATGTGTGCTGTGCTTGCACCTGCACCTACATACATGTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATGTGTGCTGTGCTTGCACCTGCACCTACATACATGTTCAC  50

seq1  ACGTATCAAACACACCACATGCAGTTAAAAAAAAAAACAAAACACCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATCAAACACACCACATGCAGTTAAAAAAAAAAACAAAACACCTACA  100

seq1  TCATAGAGCTGTCAGCAAGGACACCTGGAGGGAACATTACTATGAATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGCTGTCAGCAAGGACACCTGGAGGGAACATTACTATGAATCCA  150

seq1  GTGTTGTTGTTGGCTGCAGGTGATCTCGCTGGCCTGCAAGCCCCAGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTTGTTGGCTGCAGGTGATCTCGCTGGCCTGCAAGCCCCAGGTTT  200

seq1  CCTTGTTTCCACTTCCTTAGCTCTGAATTTATCACCACACCCAGCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTCCACTTCCTTAGCTCTGAATTTATCACCACACCCAGCTTGTA  250

seq1  AACTATGGGTTCTGAGGACCAAACTCAGGTCCTTAATGCTTACCACGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGGTTCTGAGGACCAAACTCAGGTCCTTAATGCTTACCACGGCA  300

seq1  AGCACTTTACTGATTTACCCCCCATCCTTACTTAGCCGAAGACCAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTACTGATTTACCCCCCATCCTTACTTAGCCGAAGACCAGTCAT  350

seq1  GTGGAAGTAGAGCCACACTCACGATTCCATTGTAACACCCAGACTTTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTAGAGCCACACTCACGATTCCATTGTAACACCCAGACTTTCGA  400

seq1  AACGCTCTGACTTCAGTCATACACAAAGGCATAGGGGTCTAGGGATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTCTGACTTCAGTCATACACAAAGGCATAGGGGTCTAGGGATTTAG  450

seq1  TAAATATGAATGTTACATAATACTAAATATGAACTCAATAGAACGTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGAATGTTACATAATACTAAATATGAACTCAATAGAACGTTAGT  500

seq1  AAAGTGGAAAAAAATGACTTCTGGCTACCTTGAGCCGCTCAGATTTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAAAAAATGACTTCTGGCTACCTTGAGCCGCTCAGATTTGAGT  550

seq1  GTCTCCTGGGTGCCAACCACTGGGACAGCAGTGGCAGAGCCCATTACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGGTGCCAACCACTGGGACAGCAGTGGCAGAGCCCATTACCAT  600

seq1  GGAGACTGAAGTGGGAGAATGTACTATAAATCAACCATACTGCTCAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGAAGTGGGAGAATGTACTATAAATCAACCATACTGCTCAGTGA  650

seq1  GCATCTAATCAGGTAAGCTCTGGGCAGGCCTGAGTCGAGGCTGTGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAATCAGGTAAGCTCTGGGCAGGCCTGAGTCGAGGCTGTGGCAGT  700

seq1  GAGGACAGAGGGGAACATCTAAAGTAGATGTGAGAGGTTGGGGATATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGGGGAACATCTAAAGTAGATGTGAGAGGTTGGGGATATAGC  750

seq1  TCAGTGGTAGAGAACTTGCCTACTGTGTATGAGGTCCTGGATCCAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTAGAGAACTTGCCTACTGTGTATGAGGTCCTGGATCCAGTCTT  800

seq1  CAGTAATGAAAACAAAAAAGCATATATGAGAGACAACACACACGGTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGAAAACAAAAAAGCATATATGAGAGACAACACACACGGTTGGT  850

seq1  AAGTGACTCTGGGGGCGCTTAAAACTCCCCAGGTTTCTGGACTATACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTCTGGGGGCGCTTAAAACTCCCCAGGTTTCTGGACTATACATC  900

seq1  GGAGACTGAGTTGGGGTGGAGAGGAGGTAGGGCCATTTATTCAGATTGGA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAGACTGAGTTGGGGTGGAGAGGAGGTAGGGCCATTTA-TCAGATTGGA  949

seq1  AATGAAGGATGAAAGGCAAGGTCGGTGAGTTCCACTTTCAGTGTGCTGAG  1000
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGAA-GATGAAAGGCAAAGTCGGTGAGTTCCACTTTCAGTGTGCTGAG  998

seq1  TGGCCATACCTATCAGGT-CACTTAAGGATAAATGTATCAGAGTCTACAA  1049
      ||| ||||||||||| || |||||| |||||| |||||||||||||||||
seq2  TGG-CATACCTATCAAGTCCACTTAGGGATAATTGTATCAGAGTCTACAA  1047

seq1  CCAAGTTGAAATCCCAGTTTGTCTATGTCTTGACTCTTTAACCTCAAGGA  1099
      |  ||||||||||||||||||||| |||| ||| ||||  | ||||||||
seq2  C--AGTTGAAATCCCAGTTTGTCT-TGTC-TGA-TCTT--AACTCAAGGA  1090

seq1  A-ATTCCTT-AGCCTCTCTGAATAGCCATTTGATCA  1133
      | ||||||| |||||||| ||||||||| |||||||
seq2  ATATTCCTTAAGCCTCTC-GAATAGCCA-TTGATCA  1124

seq1: chr12_82027486_82028091
seq2: B6Ng01-346K03.g_67_672 (reverse)

seq1  AAACCCTGTCTCGAAAAACCAAAAAAAAAAACAAAAAAAACAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCGAAAAACCAAAAAAAAAAACAAAAAAAACAAAACAAAA  50

seq1  CCAAAAAAAAAAAAAAAACACTAATTTCACGGGACTGTAAGCACAGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAAAAAACACTAATTTCACGGGACTGTAAGCACAGGTCC  100

seq1  TTGTCCATTTTCTGTTGCTAATAGCAACAACAAAAGCTAGGCAACTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATTTTCTGTTGCTAATAGCAACAACAAAAGCTAGGCAACTTACA  150

seq1  AAGACAAGAGATTCACTAGGTTCATGGTTCAGGCCCTGGGTCAAAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGAGATTCACTAGGTTCATGGTTCAGGCCCTGGGTCAAAGGGCT  200

seq1  CTGTCTGATAATATTCTTTCTTGGTGGAAAGTCCTGCGGTAGCACAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGATAATATTCTTTCTTGGTGGAAAGTCCTGCGGTAGCACAGAGC  250

seq1  ATGACGTGGCAAGAGATAGGCAGTGTTCCAGAGGCCTAGCCAAAGCGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTGGCAAGAGATAGGCAGTGTTCCAGAGGCCTAGCCAAAGCGGTT  300

seq1  TTATGATTGTCTCATCTTTGAGATAACCCACTAGGGCATCAAGTGCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTGTCTCATCTTTGAGATAACCCACTAGGGCATCAAGTGCTTCA  350

seq1  ACAGTTCTTGCTCTATTTTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTTGCTCTATTTTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTT  400

seq1  TGTTTTTGAGGCAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGAGGCAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCA  450

seq1  CTCTGTGGACCAGGCTGGCCTCAAATTCAGAGATCCACCTGCCTCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGACCAGGCTGGCCTCAAATTCAGAGATCCACCTGCCTCTGCCT  500

seq1  CCCGAGTTGAGTTCTGGTTCTAAAGGAATGTAATGAATCCATTTTAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTTGAGTTCTGGTTCTAAAGGAATGTAATGAATCCATTTTAGAGA  550

seq1  ACTTCAATGTCTCATCTTTTTTTAGACAAGGTCTTACCCTGGATAGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATGTCTCATCTTTTTTTAGACAAGGTCTTACCCTGGATAGTCTG  600

seq1  GAATTC  606
      ||||||
seq2  GAATTC  606