BAC Information

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BAC

Clone NameB6Ng01-347N20
Chromosome12 (Build37)12 (Build37)
Map Location 58,066,485 - 58,066,52273,527,846 - 73,528,982
singlet/doubletsingletsinglet
Overlap geneSlc25a21
Upstream geneLOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347N20.bB6Ng01-347N20.g
ACCGA129338GA129339
length4631,126
definitionB6Ng01-347N20.b B6Ng01-347N20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,066,485 - 58,066,522)(73,527,846 - 73,528,982)
sequence
agagactgttgcagcatgcacagggcctggcttagggctaagccaaatag
agagagtagatacaagtctccattcctaaccaagaagctatctccaattg
acaactgctaataaggaggaaagtgattttctccagtagagtctcactgg
gtatgcaaactgcacttaagggcaggccccatgcccagcaggagatagcc
aacccacattggattcagtggcattttaggagggtttctgtctcataatg
ctttttggaggcactttttaaaatagggcttttgcttatagactatggtt
tccaatttgtgtttttatggaaccttgctatgtgcaaacatgtgcacctc
tgcatctgtgtgtgtttctcctgcttcttcttaggctcttctttttctgt
ttgttttacttgtctgttttctaatgagagagagaaagaaaggctgtgga
tgtgggtgggtgg
gaattccacctgggaacaggtgggggcagcagtgagctgcatgagcagga
aagcaggtgactgcacttaagacccaagggggcgaacttcaggctggatc
taagcatgatgaagcagtggtatgcagaagcccggaagaccagagcaaat
gcaggattaagacacacataagcagaaccggaggtgagtatgagaattaa
agccaaacggtcacaaggtgtaagaccaccaagcagagccaggccaaggc
ctggatagtgtattcaggtcctgcagagaaaccctgctctctgcttgagt
tcaatgatgaagaaacactccaaagtgatggcttgggctgaaggcatagg
cctatccttaaaacataatctgcacaatggaatggggacttcattcacaa
ttaataggcccagctaaggtaaaggggagtgtttcccccttcttcagccc
ccttttatcctttctcttataacaaagtgggtttttttttccttttctgt
aggtcatctcacctgaggtgaccaacttcttgtctggtctggaactggga
gtttctctggcacttggcactctgttttaaaggtggacaaattccaggtg
acataagatgagctagtcactctaccccacgtgaagatggttctcagctg
gagcaagccagttggatggatgttttgaacagccaatggccctcgtctca
ctgaagggagcacacctgtcagaagacagaatgaatccgaccccaggtga
acagtcccatccagctgtgctccaggccagtgctataggaaacttgctgt
ggtatgagttagaaatcccatttttttcataaaagttgaggttttatttc
tgtcatgtggaggtcccaactggaaaggagtagaagaaaaaaaaaatatt
ctggttaattttgaggtccctggagatgactgagcatgggcagctagtct
aatataaaactagttttgagttacctgatctgtcacccttacaagttgca
cactcagcatcagagactatgagcttgagcaggtgacatgttaccatgac
ttctttcttctctgctgcttcactcggggtttcccagcgaaaatattcat
tgaacactgcatttcgtgtagctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58066485_58066522
seq2: B6Ng01-347N20.b_480_517 (reverse)

seq1  CCACCCACCCAAATCCACAGCCTTTCTTTCTCCCTCTC  38
      ||||||||||| |||||||||||||||||||| |||||
seq2  CCACCCACCCACATCCACAGCCTTTCTTTCTCTCTCTC  38

seq1: chr12_73527846_73528982
seq2: B6Ng01-347N20.g_65_1190 (reverse)

seq1  TGTAGCTCACACAGAATGCAGTGGTCATGGAATATTTTTCCCCCTTGGGA  50
      ||||||| ||||  ||||||||| |||  |||||||||   | ||  || 
seq2  TGTAGCT-ACACGAAATGCAGTGTTCAATGAATATTTT---CGCT--GGG  44

seq1  AAACACCGAGTGAAGCAAGCAGAG-AGAAAG-AGTCATGGTTACATGTCA  98
      |||| ||||||||||| ||||||| |||||| ||||||||| ||||||||
seq2  AAACCCCGAGTGAAGC-AGCAGAGAAGAAAGAAGTCATGGTAACATGTCA  93

seq1  CCTGCTCAAGCTCATAGTTCTCTTGATTGCTTGAGTTGTTGCAACTTTGT  148
      ||||||||||||||||| |||| ||| ||| |||||   ||||||||   
seq2  CCTGCTCAAGCTCATAG-TCTC-TGA-TGC-TGAGT--GTGCAACTTGTA  137

seq1  AGGGTGACAGATTCAGGTAACTTCAAAACTAGTTTTATATTAGACTAGCT  198
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AGGGTGACAGA-TCAGGTAAC-TCAAAACTAGTTTTATATTAGACTAGCT  185

seq1  GCCCATGCTCAGTCATCTCCAGGGACCTCAAAATTAACCAGATTA-TTTT  247
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  GCCCATGCTCAGTCATCTCCAGGGACCTCAAAATTAACCAGAATATTTTT  235

seq1  TTTTTCTTCTACTCCTTTCCAGTTGGGACCTCCACATGACAGAAATAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCTACTCCTTTCCAGTTGGGACCTCCACATGACAGAAATAAAA  285

seq1  CCTCAACTTTTATG-AAAAAATGGGATTTCTAACTCATACCACAGCAAGT  346
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCAACTTTTATGAAAAAAATGGGATTTCTAACTCATACCACAGCAAGT  335

seq1  TTCCTATAGCACTGGCCTGGAGCACAGCTGGATGGGACTGTTCACCTGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAGCACTGGCCTGGAGCACAGCTGGATGGGACTGTTCACCTGGG  385

seq1  GTCGGATTCATTCTGTCTTCTGACAGGTGTGCTCCCTTCAGTGAGACGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGATTCATTCTGTCTTCTGACAGGTGTGCTCCCTTCAGTGAGACGAG  435

seq1  GGCCATTGGCTGTTCAAAACATCCATCCAACTGGCTTGCTCCAGCTGAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGGCTGTTCAAAACATCCATCCAACTGGCTTGCTCCAGCTGAGA  485

seq1  ACCATCTTCACGTGGGGTAGAGTGACTAGCTCATCTTATGTCACCTGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTCACGTGGGGTAGAGTGACTAGCTCATCTTATGTCACCTGGAA  535

seq1  TTTGTCCACCTTTAAAACAGAGTGCCAAGTGCCAGAGAAACTCCCAGTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCACCTTTAAAACAGAGTGCCAAGTGCCAGAGAAACTCCCAGTTC  585

seq1  CAGACCAGACAAGAAGTTGGTCACCTCAGGTGAGATGACCTACAGAAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGACAAGAAGTTGGTCACCTCAGGTGAGATGACCTACAGAAAAG  635

seq1  GAAAAAAAAACCCACTTTGTTATAAGAGAAAGGATAAAAGGGGGCTGAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAACCCACTTTGTTATAAGAGAAAGGATAAAAGGGGGCTGAAG  685

seq1  AAGGGGGAAACACTCCCCTTTACCTTAGCTGGGCCTATTAATTGTGAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAACACTCCCCTTTACCTTAGCTGGGCCTATTAATTGTGAATG  735

seq1  AAGTCCCCATTCCATTGTGCAGATTATGTTTTAAGGATAGGCCTATGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCATTCCATTGTGCAGATTATGTTTTAAGGATAGGCCTATGCCT  785

seq1  TCAGCCCAAGCCATCACTTTGGAGTGTTTCTTCATCATTGAACTCAAGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCAAGCCATCACTTTGGAGTGTTTCTTCATCATTGAACTCAAGCA  835

seq1  GAGAGCAGGGTTTCTCTGCAGGACCTGAATACACTATCCAGGCCTTGGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGGTTTCTCTGCAGGACCTGAATACACTATCCAGGCCTTGGCC  885

seq1  TGGCTCTGCTTGGTGGTCTTACACCTTGTGACCGTTTGGCTTTAATTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGCTTGGTGGTCTTACACCTTGTGACCGTTTGGCTTTAATTCTC  935

seq1  ATACTCACCTCCGGTTCTGCTTATGTGTGTCTTAATCCTGCATTTGCTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCACCTCCGGTTCTGCTTATGTGTGTCTTAATCCTGCATTTGCTCT  985

seq1  GGTCTTCCGGGCTTCTGCATACCACTGCTTCATCATGCTTAGATCCAGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCGGGCTTCTGCATACCACTGCTTCATCATGCTTAGATCCAGCC  1035

seq1  TGAAGTTCGCCCCCTTGGGTCTTAAGTGCAGTCACCTGCTTTCCTGCTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCGCCCCCTTGGGTCTTAAGTGCAGTCACCTGCTTTCCTGCTCA  1085

seq1  TGCAGCTCACTGCTGCCCCCACCTGTTCCCAGGTGGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCACTGCTGCCCCCACCTGTTCCCAGGTGGAATTC  1126