BAC Information

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BAC

Clone NameB6Ng01-348K23
Chromosome12 (Build37)
Map Location 27,110,656 - 27,259,582
singlet/doubletdoublet
Overlap geneRsad2, Tyki, LOC668731, 1700020D12Rik
Upstream geneLOC100042973, LOC100042974, LOC668726, Rnf144
Downstream geneSox11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348K23.bB6Ng01-348K23.g
ACCGA129906GA129907
length7911,136
definitionB6Ng01-348K23.b B6Ng01-348K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,258,793 - 27,259,582)(27,110,656 - 27,111,801)
sequence
gaattcacctacagcatcctgcttctgccacctgagtgctaggattaaag
gcatgtgccaccataccgggcactggatagcccacttacatgaactgatc
atgtagtggctagagtgtatcgattttgaagattgatttaaaagttattt
gcagctcagatcccactgcctacccactaattagcaaatgagatgggtat
tttgccaaaggcttatcatatgatggccagaggtggttaagtctcctgag
atcctgtcctccttcaaagattatcagccatattggcctgtgaatgtgga
gagaggaaaccactactgaccctcaatgttcctcgtatgttcctaggtat
gaaataaattgagttgaattttatgttaacacatgggggaaaggaagaca
tgtccaaaacatggtatgttttaatagtgttaatgacaatttttgtataa
tttggggaagacatgagtgtagaaaagatgagaaaattaaataaaagcaa
tgattgtcctgcacacactacaattaagaatggattgatgctattggatg
gatcacagggcccccaatggaggagctagagaaaatacccaaggagctaa
agggatctgcaatcctataggtggaacaacattatgaactaaccagtact
ccagagctcttgactctagctgcatatgtatcaaaagatgacctagtcgg
ccatcactggaaagagaggcttgcaaactttatatgtcccagtacagggg
aacactagggccaaaaagtgggagtgggtgggtaggggggg
gaattctctacagacacatctgatggaggtaatttttgtttagttgaggt
tccttctccttgggtgaccttagattgtgtcaaactgacaaaccaccaaa
gagctcagtgactttctcttgggtcaatttggtatagagagggtactggt
tcttctcatgttgatgtatcctgggtctcgttttagagttcctcaggaga
tagtctatggagtcacgggtgcatttacactaagccagccacactccata
tggtcttcctgcccaagcttctaggactcttacagaatgcaccaacacag
ccattgttgcttttaagagtaaggtaatgaccttctcgtgctcaaactcc
tgttttagtgtgatagacccaggcagcctgaacactgagcaaggtgcagc
cacacaagcaccactcttgtgcccacatcataaaaggcaagcttagtttg
gttttgtacagaaccctggaggcatggtgtagagcagccatcctttatac
agtgtcctcaggtgctggggccatgatcaccatctctccaggagttccag
gcacactttataaaaaagattctgacctggggttctttcagatgtctgtt
gactctttttatacttccaagtaaaaagtccaagactgcgaagtagaaag
aggaagtcttaggacaggcagcagtaattaaagacacatttggtaaagtt
tcctggtgtgaaaccagcaggtcagagggtaaatcactgatacctcaaat
gaaaataaaataaaagccgggcagtggtggcacacgcctttaatcccagc
acttgggaggcagaggcaggcaagtttctgagtttaaggccagcctggtc
tacagagtgagtttcatgacagccaaggctatacagagaactctgtcttc
aaaataaataaataaataataaataaataaataaataaataaatatataa
atatgaggaggaaagaagaaaatagaaataataataataataataatttt
taatttgagagggaaagaaagaaaaaagaagaaaaagcttccaagtaaga
aggatggattgtcattagtgaaattccctcagaaatgaccaaccaacatt
ggttaatttctccccactgctaccaatggaaatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27258793_27259582
seq2: B6Ng01-348K23.b_45_834 (reverse)

seq1  CCCCCCTACCCACCCACTCCCACTTTTTGGCCCTAGTGTTCCCCTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTACCCACCCACTCCCACTTTTTGGCCCTAGTGTTCCCCTGTACT  50

seq1  GGGACATATAAAGTTTGCAAGCCTCTCTTTCCAGTGATGGCCGACTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATATAAAGTTTGCAAGCCTCTCTTTCCAGTGATGGCCGACTAGGT  100

seq1  CATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGAGTACTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGAGTACTGGTT  150

seq1  AGTTCATAATGTTGTTCCACCTATAGGATTGCAGATCCCTTTAGCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAATGTTGTTCCACCTATAGGATTGCAGATCCCTTTAGCTCCTT  200

seq1  GGGTATTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAG  250

seq1  CATCAATCCATTCTTAATTGTAGTGTGTGCAGGACAATCATTGCTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCCATTCTTAATTGTAGTGTGTGCAGGACAATCATTGCTTTTAT  300

seq1  TTAATTTTCTCATCTTTTCTACACTCATGTCTTCCCCAAATTATACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTCTCATCTTTTCTACACTCATGTCTTCCCCAAATTATACAAAA  350

seq1  ATTGTCATTAACACTATTAAAACATACCATGTTTTGGACATGTCTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATTAACACTATTAAAACATACCATGTTTTGGACATGTCTTCCTT  400

seq1  TCCCCCATGTGTTAACATAAAATTCAACTCAATTTATTTCATACCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATGTGTTAACATAAAATTCAACTCAATTTATTTCATACCTAGGA  450

seq1  ACATACGAGGAACATTGAGGGTCAGTAGTGGTTTCCTCTCTCCACATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGAGGAACATTGAGGGTCAGTAGTGGTTTCCTCTCTCCACATTCA  500

seq1  CAGGCCAATATGGCTGATAATCTTTGAAGGAGGACAGGATCTCAGGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAATATGGCTGATAATCTTTGAAGGAGGACAGGATCTCAGGAGAC  550

seq1  TTAACCACCTCTGGCCATCATATGATAAGCCTTTGGCAAAATACCCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACCTCTGGCCATCATATGATAAGCCTTTGGCAAAATACCCATCT  600

seq1  CATTTGCTAATTAGTGGGTAGGCAGTGGGATCTGAGCTGCAAATAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTAATTAGTGGGTAGGCAGTGGGATCTGAGCTGCAAATAACTTT  650

seq1  TAAATCAATCTTCAAAATCGATACACTCTAGCCACTACATGATCAGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAATCTTCAAAATCGATACACTCTAGCCACTACATGATCAGTTCA  700

seq1  TGTAAGTGGGCTATCCAGTGCCCGGTATGGTGGCACATGCCTTTAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTGGGCTATCCAGTGCCCGGTATGGTGGCACATGCCTTTAATCCT  750

seq1  AGCACTCAGGTGGCAGAAGCAGGATGCTGTAGGTGAATTC  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGGTGGCAGAAGCAGGATGCTGTAGGTGAATTC  790

seq1: chr12_27110656_27111801
seq2: B6Ng01-348K23.g_69_1204

seq1  GAATTCTCTACAGACACATCTGATGGAGGTAATTTTTGTTTAGTTGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAGACACATCTGATGGAGGTAATTTTTGTTTAGTTGAGGT  50

seq1  TCCTTCTCCTTGGGTGACCTTAGATTGTGTCAAACTGACAAACCACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTTGGGTGACCTTAGATTGTGTCAAACTGACAAACCACCAAA  100

seq1  GAGCTCAGTGACTTTCTCTTGGGTCAATTTGGTATAGAGAGGGTACTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTGACTTTCTCTTGGGTCAATTTGGTATAGAGAGGGTACTGGT  150

seq1  TCTTCTCATGTTGATGTATCCTGGGTCTCGTTTTAGAGTTCCTCAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATGTTGATGTATCCTGGGTCTCGTTTTAGAGTTCCTCAGGAGA  200

seq1  TAGTCTATGGAGTCACGGGTGCATTTACACTAAGCCAGCCACACTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATGGAGTCACGGGTGCATTTACACTAAGCCAGCCACACTCCATA  250

seq1  TGGTCTTCCTGCCCAAGCTTCTAGGACTCTTACAGAATGCACCAACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTCCTGCCCAAGCTTCTAGGACTCTTACAGAATGCACCAACACAG  300

seq1  CCATTGTTGCTTTTAAGAGTAAGGTAATGACCTTCTCGTGCTCAAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTGCTTTTAAGAGTAAGGTAATGACCTTCTCGTGCTCAAACTCC  350

seq1  TGTTTTAGTGTGATAGACCCAGGCAGCCTGAACACTGAGCAAGGTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTGTGATAGACCCAGGCAGCCTGAACACTGAGCAAGGTGCAGC  400

seq1  CACACAAGCACCACTCTTGTGCCCACATCATAAAAGGCAAGCTTAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGCACCACTCTTGTGCCCACATCATAAAAGGCAAGCTTAGTTTG  450

seq1  GTTTTGTACAGAACCCTGGAGGCATGGTGTAGAGCAGCCATCCTTTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTACAGAACCCTGGAGGCATGGTGTAGAGCAGCCATCCTTTATAC  500

seq1  AGTGTCCTCAGGTGCTGGGGCCATGATCACCATCTCTCCAGGAGTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCAGGTGCTGGGGCCATGATCACCATCTCTCCAGGAGTTCCAG  550

seq1  GCACACTTTATAAAAAAGATTCTGACCTGGGGTTCTTTCAGATGTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTTATAAAAAAGATTCTGACCTGGGGTTCTTTCAGATGTCTGTT  600

seq1  GACTCTTTTTATACTTCCAAGTAAAAAGTCCAAGACTGCGAAGTAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTTTATACTTCCAAGTAAAAAGTCCAAGACTGCGAAGTAGAAAG  650

seq1  AGGAAGTCTTAGGACAGGCAGCAGTAATTAAAGACACATTTGGTAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCTTAGGACAGGCAGCAGTAATTAAAGACACATTTGGTAAAGTT  700

seq1  TCCTGGTGTGAAACCAGCAGGTCAGAGGGTAAATCACTGATACCTCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTGAAACCAGCAGGTCAGAGGGTAAATCACTGATACCTCAAAT  750

seq1  GAAAATAAAATAAAAGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATAAAAGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGC  800

seq1  ACTTGGGAGGCAGAGGCAGGCAAGTTTCTGAGTTTAAGGCCAGCCTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGCAAGTTTCTGAGTTTAAGGCCAGCCTGGTC  850

seq1  TACAGAGTGAGTTTCATGACAGCCAAGGCTATACAGAGAACTCTGTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TACAGAGTGAGTTTCATGACAGCCAAGGCTATACAGAGAACTCTGTCTTC  900

seq1  AAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATATATA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAATAAAT-AATAAATAAATAAATAAATAAATAAATATATA  949

seq1  AATATGAGAGGAAAAGAAAAGAAAAATAAGAAATAAATAAATAAATAAAT  1000
      ||||||||  | ||||  |||||||   |||||| |||||   |||||  
seq2  AATATGAGGAGGAAAG--AAGAAAA--TAGAAAT-AATAA--TAATAA--  990

seq1  AAATAAATATATAAATATGAGAGGAAAAGAAAAGAAAAAAAAGAAGAAAA  1050
       |||||   | | ||| ||||||| |||||||  ||||| ||||  ||||
seq2  TAATAA--TTTTTAATTTGAGAGGGAAAGAAAGAAAAAAGAAGA--AAAA  1036

seq1  GCTTCAAAGTAAGAA-GATGGA-TGTCA-TAGTGAAATTCCCTCAGAATA  1097
      ||||| ||||||||| |||||| ||||| |||||||||||||||||||  
seq2  GCTTCCAAGTAAGAAGGATGGATTGTCATTAGTGAAATTCCCTCAGAAAT  1086

seq1  AACAAACAAACATGGGTTTATTTCTCCCCACTGTTACCAAT-GAAATGCC  1146
       || ||| ||||| |||| |||||||||||||| ||||||| ||||||||
seq2  GACCAACCAACATTGGTTAATTTCTCCCCACTGCTACCAATGGAAATGCC  1136