BAC Information

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BAC

Clone NameB6Ng01-350A02
Chromosome12 (Build37)
Map Location 28,022,596 - 28,023,736
singlet/doubletsinglet
Overlap geneSox11
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneLOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350A02.bB6Ng01-350A02.g
ACCGA130818GA130819
length1,117770
definitionB6Ng01-350A02.b B6Ng01-350A02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaagtgaagaacaaatgttcatttcttacactgttctagtatc
aagatgattgtggtttcaattcccagagaaaaaaagtagaccttgccttt
tgatttttttttctctcaaaacaactaagtcagatcctgactgctaagag
catgcatatttaaatcacttcccctccattaacattaaaaagaaccatcc
aggcccaaaagagctgcaatgattttttttttctagctaaaggctaatca
ttctacaaataatttgcccagtgaccgtagtcattcataacatgtatttg
caaagcacactttaagcacactgcctttcattcgtattatctttttaata
aggatgcatatcgagaatgtagaaactggaaattatttccacagcttaaa
gaataagagaacgctggttcaggtgtttttgtttttttgtttcttcaaag
atggaaatctcgccaaaaaaaaatgcactcgagtctgtgaactaggtaca
ggagcagggtacccaaccggctagactgctatgcacacaacgcccacgcc
cacgttaccattttaagatactgtcaatgctcagttaaaaataagactta
cttaggaggaaaaaaaatgcagctaaccttttattgaagcctggccagta
gctggaataccttgtgtattagacattcaatagagttcactgggaatggt
cttcacaatgcattcgtcgaaaccgctttaaatattgttaaaagcgcatt
caagcgcctttcctgagttctaactgggatttaaaaaataaaaataaaaa
agaaaggaagaaagatttcttttttttcctgatctcaaccaagaaactgt
ctcttctttttcctaccaagaaactcggccacataaatttaaaatacaaa
ttgcagctatgcttcattctgaagccagatcctcacttcttttctattta
tttaaagttccttcttcacatggaaaacgccgacgggaaacgggaacaca
tgcaaatgtaagactcaagaccctcagatgctttctaggctcagatctgt
cccagtaacgctgggtgatatcccgggcttaaagtcccgcggtggctcaa
agccagggcgctgtggg

gaattctatgctaaaaccatttggccttatttttcttttcttttcttttt
ttctctccatttcttttctttcttttactttttttctttttttccctttt
ttccttttttttttttcccctttgggaggcttttaataactgctcccatt
tccttggggatctgtttaattgtttatatgatcttgatttaaatttggta
aatgatatcttttgagaaaattgtccatttcttttagattttacaattat
gtggagtacaggtttttgaaggatgacctaatgattcttggctgtcgtag
gtatctgtggtgatgtctcccttttcatttcaaatcttgttaatttggac
actgtctctttatcttttagttagtttggataagcgtttgtctatcatgt
tgatttttcttcaagagccaaccctttgtttcattgattctttgtttcca
ttttgttgatttcagtgagtttgattatttgctgctatctattcctcttg
ttttttcttttcttcttttttattttgtttttcctttttttttctagctc
tttcgggtatactattaatttcctagtatgtgatctctccagtttcgtta
tgaaggcactcagtgctacgaacttttctcagtgccactttcatgtgtcc
cataaattttctgtatgctgtgccttcattttccttgaattctaggaagt
ctttcatttctttatttcttcctttgatccaaaggtcatttattagagag
ctgttcaatttccaccagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28022596_28023736
seq2: B6Ng01-350A02.b_46_1162

seq1  GAATTCTGAAGTGAAGAACAAATGTTCATTTCTTACACTGTTCTAGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGTGAAGAACAAATGTTCATTTCTTACACTGTTCTAGTATC  50

seq1  AAGATGATTGTGGTTTCAATTCCCAGAGAAAAAAAGTAGACCTTGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATTGTGGTTTCAATTCCCAGAGAAAAAAAGTAGACCTTGCCTTT  100

seq1  TGATTTTTTTTTCTCTCAAAACAACTAAGTCAGATCCTGACTGCTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTTTCTCTCAAAACAACTAAGTCAGATCCTGACTGCTAAGAG  150

seq1  CATGCATATTTAAATCACTTCCCCTCCATTAACATTAAAAAGAACCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATATTTAAATCACTTCCCCTCCATTAACATTAAAAAGAACCATCC  200

seq1  AGGCCCAAAAGAGCTGCAATGATTTTTTTTTTCTAGCTAAAGGCTAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAAAGAGCTGCAATGATTTTTTTTTTCTAGCTAAAGGCTAATCA  250

seq1  TTCTACAAATAATTTGCCCAGTGACCGTAGTCATTCATAACATGTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAAATAATTTGCCCAGTGACCGTAGTCATTCATAACATGTATTTG  300

seq1  CAAAGCACACTTTAAGCACACTGCCTTTCATTCGTATTATCTTTTTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACACTTTAAGCACACTGCCTTTCATTCGTATTATCTTTTTAATA  350

seq1  AGGATGCATATCGAGAATGTAGAAACTGGAAATTATTTCCACAGCTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCATATCGAGAATGTAGAAACTGGAAATTATTTCCACAGCTTAAA  400

seq1  GAATAAGAGAACGCTGGTTCAGGTGTTTTTGTTTTTTTGTTTCTTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAGAACGCTGGTTCAGGTGTTTTTGTTTTTTTGTTTCTTCAAAG  450

seq1  ATGGAAATCTCGCCAAAAAAAAATGCACTCGAGTCTGTGAACTAGGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCTCGCCAAAAAAAAATGCACTCGAGTCTGTGAACTAGGTACA  500

seq1  GGAGCAGGGTACCCAACCGGCTAGACTGCTATGCACACAACGCCCACGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGTACCCAACCGGCTAGACTGCTATGCACACAACGCCCACGCC  550

seq1  CACGTTACCATTTTAAGATACTGTCAATGCTCAGTTAAAAATAAGACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTACCATTTTAAGATACTGTCAATGCTCAGTTAAAAATAAGACTTA  600

seq1  CTTAGGAGGAAAAAAAATGCAGCTAACCTTTTATTGAAGCCTGGCCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGGAAAAAAAATGCAGCTAACCTTTTATTGAAGCCTGGCCAGTA  650

seq1  GCTGGAATACCTTGTGTATTAGACATTCAATAGAGTTCACTGGGAATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATACCTTGTGTATTAGACATTCAATAGAGTTCACTGGGAATGGT  700

seq1  CTTCACAATGCATTCGTCGAAACCGCTTTAAATATTGTTAAAAGCGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAATGCATTCGTCGAAACCGCTTTAAATATTGTTAAAAGCGCATT  750

seq1  CAAGCGCCTTTCCTGAGTTCTAACTGGGATTTAAAAAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||      |||||| |||||
seq2  CAAGCGCCTTTCCTGAGTTCTAACTGGGATTT------AAAAAATAAAAA  794

seq1  AAAAAAAGAAAGAAAGAAAAGATTTC-TTTTTTTCCTGATCTCCAACCAA  849
       ||||||||||| ||| ||||||||| ||||||||||||||| |||||||
seq2  TAAAAAAGAAAGGAAG-AAAGATTTCTTTTTTTTCCTGATCT-CAACCAA  842

seq1  G-AACTGTCTCTTC-TTTTCCTACCAAGAAACTCGGCCACATAATTTTAA  897
      | |||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  GAAACTGTCTCTTCTTTTTCCTACCAAGAAACTCGGCCACATAAATTTAA  892

seq1  AATACAAATTGCAGCTATGCTTCCATTCTGAAGCCAGATCCTCACTCCTT  947
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  AATACAAATTGCAGCTATGCTT-CATTCTGAAGCCAGATCCTCACTTCTT  941

seq1  TTCTAATTTATTTAAAAGTTCCTTCCTCACCATGGAAAACGCCCGACGGG  997
      |||| |||||||| ||||||||||| ||| ||||||||||| ||||||||
seq2  TTCT-ATTTATTT-AAAGTTCCTTCTTCA-CATGGAAAACG-CCGACGGG  987

seq1  AAACGGGAACACATGCAAATGTTAAGAACTCAAGACACTCAGAATGCCTT  1047
      ||||||||||||||||||||| |||| ||||||||| ||||| ||||  |
seq2  AAACGGGAACACATGCAAATG-TAAG-ACTCAAGACCCTCAG-ATGC--T  1032

seq1  TTCCTTAGGCTTCAGAATCTGTCCCCAGTAAACCGCT-GGTGAAATTATT  1096
      |||  ||||| |||| |||||| ||||||||  |||| |||||   ||| 
seq2  TTC--TAGGC-TCAG-ATCTGT-CCCAGTAA--CGCTGGGTGA---TATC  1072

seq1  CGCGGCTTAAAGGTCCCCGCGTGGCTCACAG-CAGGGCGCTGTGGG  1141
      |  |||||||| |||||   |||||||| || ||||||||||||||
seq2  CCGGGCTTAAA-GTCCCGCGGTGGCTCAAAGCCAGGGCGCTGTGGG  1117


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