BAC Information

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BAC

Clone NameB6Ng01-350E01
Chromosome12 (Build37)
Map Location 40,795,616 - 40,944,717
singlet/doubletdoublet
Overlap geneScin, Gm889, Ifrd1
Upstream geneLOC100043148, Arl4a, LOC100043606
Downstream geneEG629820, Zfp277, Dock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350E01.bB6Ng01-350E01.g
ACCGA130982GA130983
length1,2141,057
definitionB6Ng01-350E01.b B6Ng01-350E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,795,616 - 40,796,846)(40,943,670 - 40,944,717)
sequence
gaattcctctacggaatgcacaatgagttacttagtacatattcaggagc
atatatacttcataggatttcacatcaatgacaatattatttcatcctaa
ctaaatgataccagatgccatcaacacttgcaattaacagaagcatcctt
acacaactctaatgataagaaaaatgattttttattgaatgaagtcaatt
agaactatgaaagtggtgaccttgggcccacagcacacacctggttcctt
gccttcttgaattcttgaagctttgcacttgaggacatcagccacatact
ctgctcctttctcctcctcctggctagcaccttttcctatccagatgaag
ccattgtttcgtggcagttttaggacaaaagtgtcattagaatttaatga
atttgcatcaacgtcaacctagggtatgagggaaaacaatacaatgattc
aaatttactactgaggctgtggggagccatccagagccttctgcctggcc
ctaattcaaggcataggtgcaatagatgcctaaaacatgtgagtaagcat
gccttggtccatgacacatgttcagctgccctcggacaataaaacacggc
tttaaaatgtcactagtttggcagcatgtgttatcccaagccattaatcc
tagcactcaagagacagaagcagccagatctctgtgaatttaaagccaga
ctgggctacatagaaatttcagggcagcaaagactgcatggagagactgt
ctcaaaattaattaaaatagccaagcaattggtcaagaattgagggtttt
gtccaggagaccaggagatagttcactcttataattctaccacttggggg
ttgaaacagaagatagtaaaaagtccagtctatgttatacagatgactcc
atctcaaaaacaagactgctaaagtgacagccctcttaagagcacacact
ggtctctggaggacttgagttgggtcaccagcacctgcatcaggcagctg
taaatgctctaactccatagagctccaggagatcacaccctctgtagtcc
caaacatggcaggaaacatgctgcaacatagtagatcctccacatgaaca
taccctcacaaaatgggggggggggaacaaaccaccaatgaatgactgac
aagtgataaaataaattagaattactagggccagaacagtccaaccctga
tgtcctgaacaaag

gaattccatgccagctcaggctatccagggagacactgacttaaaacggg
agcaggggaagcattttaatttgcaccggcttttataacatatcagatat
aaaacttctgctattcttttgttaccttaaaacctgccccttttgaactt
ggcacttgcctttaaaatcaggctcctgaacaagaggctatttatttact
ggctactgcttactaaagctagttctcattgttgatgattggtacatttc
tgcagttgcttcataatgtaaatagttgaccttctgtagtacagacttga
tgaatcaacttattttaggaatgttacatatcttcttttgcaatttaatt
gtctctttacaaaaagtttgaccttagtacaagatcacttttaagtaaga
tttataatttccaagttatgaatttgctagccgggcgtggtggcgcacgc
ctttaatcccagcactcgtaaggcagaggcaggcagatttctgagttcga
ggccagcctggtctacagagtgagttccaggacagcaagggctatacaga
gaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaagaatttgcgtgtgt
gtgtgtgtgtgtatcaaagagaattcatttctttccttttcctaataggt
ggcccgcatcggactgttcaacctttcagtgatgaagatgcatccattga
aacaatgagccactgcagcggctatagcgatccttccagttttgcggagg
atggtaggagttttaaatgtatacctgtggcttgccgtacaaagatgacg
tgggagttcttgtatatgagctatagtgttcccttttcccaatctacttt
tttcccttgctttgttacaagtgttggtttctattctgtaggggccagaa
agttctttgatgaagaaaggtacttcaagaagacttagagtacaatgtgg
agggattatttgacctaacctttgaataaagaagtagagttgttaaagct
ttcattctgggtgattctaatcagttacttttattatggactttggtgca
tttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40795616_40796846
seq2: B6Ng01-350E01.b_47_1260

seq1  GAATTCCTCTACGGAATGCACAATGAGTTACTTAGTACATATTCAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTACGGAATGCACAATGAGTTACTTAGTACATATTCAGGAGC  50

seq1  ATATATACTTCATAGGATTTCACATCAATGACAATATTATTTCATCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTTCATAGGATTTCACATCAATGACAATATTATTTCATCCTAA  100

seq1  CTAAATGATACCAGATGCCATCAACACTTGCAATTAACAGAAGCATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGATACCAGATGCCATCAACACTTGCAATTAACAGAAGCATCCTT  150

seq1  ACACAACTCTAATGATAAGAAAAATGATTTTTTATTGAATGAAGTCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTCTAATGATAAGAAAAATGATTTTTTATTGAATGAAGTCAATT  200

seq1  AGAACTATGAAAGTGGTGACCTTGGGCCCACAGCACACACCTGGTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATGAAAGTGGTGACCTTGGGCCCACAGCACACACCTGGTTCCTT  250

seq1  GCCTTCTTGAATTCTTGAAGCTTTGCACTTGAGGACATCAGCCACATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTGAATTCTTGAAGCTTTGCACTTGAGGACATCAGCCACATACT  300

seq1  CTGCTCCTTTCTCCTCCTCCTGGCTAGCACCTTTTCCTATCCAGATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTTTCTCCTCCTCCTGGCTAGCACCTTTTCCTATCCAGATGAAG  350

seq1  CCATTGTTTCGTGGCAGTTTTAGGACAAAAGTGTCATTAGAATTTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTCGTGGCAGTTTTAGGACAAAAGTGTCATTAGAATTTAATGA  400

seq1  ATTTGCATCAACGTCAACCTAGGGTATGAGGGAAAACAATACAATGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATCAACGTCAACCTAGGGTATGAGGGAAAACAATACAATGATTC  450

seq1  AAATTTACTACTGAGGCTGTGGGGAGCCATCCAGAGCCTTCTGCCTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTACTGAGGCTGTGGGGAGCCATCCAGAGCCTTCTGCCTGGCC  500

seq1  CTAATTCAAGGCATAGGTGCAATAGATGCCTAAAACATGTGAGTAAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCAAGGCATAGGTGCAATAGATGCCTAAAACATGTGAGTAAGCAT  550

seq1  GCCTTGGTCCATGACACATGTTCAGCTGCCCTCGGACAATAAAACACGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCCATGACACATGTTCAGCTGCCCTCGGACAATAAAACACGGC  600

seq1  TTTAAAATGTCACTAGTTTGGCAGCATGTGTTATCCCAAGCCATTAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTCACTAGTTTGGCAGCATGTGTTATCCCAAGCCATTAATCC  650

seq1  TAGCACTCAAGAGACAGAAGCAGCCAGATCTCTGTGAATTTAAAGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCAAGAGACAGAAGCAGCCAGATCTCTGTGAATTTAAAGCCAGA  700

seq1  CTGGGCTACATAGAAATTTCAGGGCAGCAAAGACTGCATGGAGAGACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACATAGAAATTTCAGGGCAGCAAAGACTGCATGGAGAGACTGT  750

seq1  CTCAAAATTAATTAAAATAGCCAAGCAATTGGTCAAGAATTGAGGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTAATTAAAATAGCCAAGCAATTGGTCAAGAATTGAGGGTTTT  800

seq1  GTCCAGGAGACCAGGAGATAGTTCACTCTTATAATTCTACCACTTGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAGACCAGGAGATAGTTCACTCTTATAATTCTACCACTTGGGGG  850

seq1  TTGAAACAGAAGATAGTAAAAAGTCCAGTCTATGTTATACAGATGACTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAGAAGATAGTAAAAAGTCCAGTCTATGTTATACAGATGACTCC  900

seq1  ATCTCAAAAACAAGACTGCTAAAGTGACAGCCCTCTTAAGAGCACACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAAACAAGACTGCTAAAGTGACAGCCCTCTTAAGAGCACACACT  950

seq1  GGTCTTCTGGAGGACTTGAGTTGGGTCACCAGCACCTGCATCAGGCAGCT  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTC-TCTGGAGGACTTGAGTTGGGTCACCAGCACCTGCATCAGGCAGCT  999

seq1  GTAAATGCTCTAACTCCATAGAGCTCCAGGAGATCCAACACCCTCTTGTA  1050
      |||||||||||||||||||||||||||||||||||  |||||||| ||||
seq2  GTAAATGCTCTAACTCCATAGAGCTCCAGGAGATC--ACACCCTC-TGTA  1046

seq1  GTTCCCAAACATGGCAGGGAAACATGGCTGCCAACATAGTAGATCCT-CA  1099
      | |||||||||||||| |||||||| |||| |||||||||||||||| ||
seq2  G-TCCCAAACATGGCA-GGAAACAT-GCTG-CAACATAGTAGATCCTCCA  1092

seq1  CATGAACATACACTCACAAAAATGGGGGGGGGGAACAAAACCACCCAATT  1149
      ||||||||||| |||||||||  ||||||||||||| |||||| ||||| 
seq2  CATGAACATACCCTCACAAAATGGGGGGGGGGGAAC-AAACCA-CCAATG  1140

seq1  GATGACTTGACAAAGTGATAAAAATAATATTTAGAGATATTACATAGGCG  1199
       ||||| |||| |||||||||||  ||   |||||   ||||| ||||  
seq2  AATGAC-TGAC-AAGTGATAAAATAAA---TTAGA---ATTAC-TAGGGC  1181

seq1  CAAGACAAGCCACACCTGATG-CCTGAACAAAG  1231
      ||  |||  |||  ||||||| |||||||||||
seq2  CAGAACAGTCCAACCCTGATGTCCTGAACAAAG  1214


seq1: chr12_40943670_40944717
seq2: B6Ng01-350E01.g_64_1120 (reverse)

seq1  AGAGAAATGCA-CAAAGTCCATAAT-AAAGTAACTGATTAGAATCACCCA  48
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  AGAGAAATGCACCAAAGTCCATAATAAAAGTAACTGATTAGAATCACCCA  50

seq1  GAATGGAAAGCTTTTAACACCTCTTACCTCTT--ATCAAGGGTTAGGTCA  96
      |||| |||||| ||||||| ||| ||| ||||   |||| ||||||||||
seq2  GAAT-GAAAGC-TTTAACAACTC-TACTTCTTTATTCAAAGGTTAGGTCA  97

seq1  ATTAATCCCTTCAACTTGTACTCTAAGTCTTCTTG-AGTTCC-TTCCTCA  144
      | |||||||| ||  |||||||||||||||||||| ||| || ||| |||
seq2  AATAATCCCTCCACATTGTACTCTAAGTCTTCTTGAAGTACCTTTCTTCA  147

seq1  TC-AAGAAC-TTCTGG-CCCTACAGAATAGAAACCAACAC-TGTAACAAA  190
      || |||||| |||||| ||||||||||||||||||||||| |||||||||
seq2  TCAAAGAACTTTCTGGCCCCTACAGAATAGAAACCAACACTTGTAACAAA  197

seq1  GC-AGGGAAAAAAGTAGATTGGGAAAA-GGAACACTATAGCTCATATACA  238
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCAAGGGAAAAAAGTAGATTGGGAAAAGGGAACACTATAGCTCATATACA  247

seq1  AGAACTCCCACGTCATCTTTGTACGGCAAGCCACAGGTATACATTTAAAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCCACGTCATCTTTGTACGGCAAGCCACAGGTATACATTTAAAA  297

seq1  CTCCTACCATCCTCCGCAAAACTGGAAGGATCGCTATAGCCGCTGCAGTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCATCCTCCGCAAAACTGGAAGGATCGCTATAGCCGCTGCAGTG  347

seq1  GCTCATTGTTTCAATGGATGCATCTTCATCACTGAAAGGTTGAACAGTCC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGTTTCAATGGATGCATCTTCATCACTGAAAGGTTGAACAGTCC  397

seq1  GATGCGGGCCACCTATTAGGAAAAGGAAAGAAATGAATTCTCTTTGATAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGGGCCACCTATTAGGAAAAGGAAAGAAATGAATTCTCTTTGATAC  447

seq1  ACACACACACACACACGCAAATTCTTTTTTTTTTTTTTTTTTTTTTTGAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACGCAAATTCTTTTTTTTTTTTTTTTTTTTTTTGAG  497

seq1  ACAGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCACTCTGTAGAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCACTCTGTAGAC  547

seq1  CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTACGAGTGCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTACGAGTGCT  597

seq1  GGGATTAAAGGCGTGCGCCACCACGCCCGGCTAGCAAATTCATAACTTGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCGTGCGCCACCACGCCCGGCTAGCAAATTCATAACTTGG  647

seq1  AAATTATAAATCTTACTTAAAAGTGATCTTGTACTAAGGTCAAACTTTTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAAATCTTACTTAAAAGTGATCTTGTACTAAGGTCAAACTTTTT  697

seq1  GTAAAGAGACAATTAAATTGCAAAAGAAGATATGTAACATTCCTAAAATA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGACAATTAAATTGCAAAAGAAGATATGTAACATTCCTAAAATA  747

seq1  AGTTGATTCATCAAGTCTGTACTACAGAAGGTCAACTATTTACATTATGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCATCAAGTCTGTACTACAGAAGGTCAACTATTTACATTATGA  797

seq1  AGCAACTGCAGAAATGTACCAATCATCAACAATGAGAACTAGCTTTAGTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGCAGAAATGTACCAATCATCAACAATGAGAACTAGCTTTAGTA  847

seq1  AGCAGTAGCCAGTAAATAAATAGCCTCTTGTTCAGGAGCCTGATTTTAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGCCAGTAAATAAATAGCCTCTTGTTCAGGAGCCTGATTTTAAA  897

seq1  GGCAAGTGCCAAGTTCAAAAGGGGCAGGTTTTAAGGTAACAAAAGAATAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGCCAAGTTCAAAAGGGGCAGGTTTTAAGGTAACAAAAGAATAG  947

seq1  CAGAAGTTTTATATCTGATATGTTATAAAAGCCGGTGCAAATTAAAATGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTTATATCTGATATGTTATAAAAGCCGGTGCAAATTAAAATGC  997

seq1  TTCCCCTGCTCCCGTTTTAAGTCAGTGTCTCCCTGGATAGCCTGAGCTGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGCTCCCGTTTTAAGTCAGTGTCTCCCTGGATAGCCTGAGCTGG  1047

seq1  CATGGAATTC  1048
      ||||||||||
seq2  CATGGAATTC  1057


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