Query= MSMg01no046_e01.b1 MSMg01no046_e01.b1 CHROMAT_FILE:
MSMg01no046_e01.b1 PHD_FILE: MSMg01no046_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:23 2005
(515 letters)
>mm_chr12_90530561_90531475
Length = 915
Score = 886 bits (458), Expect = 0.0
Identities = 498/516 (96%), Gaps = 9/516 (1%)
Strand = Plus / Plus
Query: 5 gaattctccaactttc-tttttattaatgtggctctcccttcctctttccctttccccct 63
|||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 196 gaattctccaactttctttttttttaatgtggctctccctttctctttccctttccccct 255
Query: 64 ttgtcattccatacattccttacttccttcagtcattccttcccacctattactttcagc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgtcattccatacattccttacttccttcagtcattccttcccacctattactttcagc 315
Query: 124 aggtcgctgtgttgtctatgctggtctcagtatccagttgattctctctcctccaccttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aggtcgctgtgttgtctatgctggtctcagtatccagttgattctctctcctccaccttc 375
Query: 184 caagaactgagactcatcatctccttttgccttctcctacttccatctccacaatcagga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caagaactgagactcatcatctccttttgccttctcctacttccatctccacaatcagga 435
Query: 244 attgtttgtttgtttcattttcataagtgctgtagaatat--------atcaagacacaa 295
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 436 attgtttgtttgtttcattttcataagttctgtagaatatgccattgcatcaagacacaa 495
Query: 296 ccctaatttgaaaactaagctattttatactaatcctttattatacttctactagctgat 355
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 ccctaatttgaaaactaatctattttatactaatccttcattatacttctactagctgat 555
Query: 356 tgctctgaaacatgaagttcacccttctgacacaagcatcttctcttagagtgagggttg 415
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 556 tgctctgaaacttgaagttcacccttctgacacaagcatcttctcttaaagtgagggttg 615
Query: 416 cctctctccttaatgatcttctctgcctcctcagcttttccttcctatgctgatgtgtct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cctctctccttaatgatcttctctgcctcctcagcttttccttcctatgctgatgtgtct 675
Query: 476 ccccatccctcatgacgtcatccaaaggttttactc 511
||||||||||||||| ||||||||||||||||||||
Sbjct: 676 ccccatccctcatgatgtcatccaaaggttttactc 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_e01.g1 MSMg01no046_e01.g1 CHROMAT_FILE:
MSMg01no046_e01.g1 PHD_FILE: MSMg01no046_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:23 2005
(438 letters)
>mm_chr12_90666063_90666900
Length = 838
Score = 590 bits (305), Expect = e-173
Identities = 322/329 (97%), Gaps = 3/329 (0%)
Strand = Plus / Minus
Query: 113 ggaatccattgtgcaacatggtgactagagtcatttgttttatttgttggatcttgctga 172
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 838 ggaatccattgtgcaacatggtgactagaatcatttgttttatttgttggatcttgctga 779
Query: 173 gaataga---tttttcaatgttctaatcacaaagaagtacatgaaataatgactatttta 229
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gaatagattttttttcaatgttctaatcacaaagaagtacatgaaataatgactatttta 719
Query: 230 aatcactttattcaaatgatccattaggtggaaatatttcaaaacatcattaatattcag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aatcactttattcaaatgatccattaggtggaaatatttcaaaacatcattaatattcag 659
Query: 290 gcatatatatttagaaatataaaatgtgactttcaagctactttctgttgttctggactt 349
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 658 gcatatatatttagaaatataaaatgtgactttcaagctactttctgttattctggactt 599
Query: 350 aacagcaataaattagtttgaattattaaagaaaacttttctttttttcattgtaaacca 409
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 598 aagagcaataaattagtttgaattattaaagaaaactttcctttttttcattgtaaacca 539
Query: 410 gatacaggtcaataactgagaaatgcatt 438
|||||||||||||||||||||||||||||
Sbjct: 538 gatacaggtcaataactgagaaatgcatt 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
