BAC Information

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BAC

Clone NameMSMg01-046J09
Chromosome12 (Build37)
Map Location 97,251,505 - 97,251,877
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039603, LOC667688, Flrt2
Downstream gene1700019M22Rik, LOC100039664, EG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046J09.T7 (MSMg01no046_j09.b1)MSMg01-046J09.TJ (MSMg01no046_j09.g1)
ACCAG276926AG276927
length663744
length of high quality
(start - end)
379 (17 - 395)309 (130 - 438)
definitionCHROMAT_FILE: MSMg01no046_j09.b1 PHD_FILE: MSMg01no046_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:46 2005CHROMAT_FILE: MSMg01no046_j09.g1 PHD_FILE: MSMg01no046_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TACCTATTTCAGAGAATCCGCGGAATTCTCAATATGTATGAATGATAATT
TCCTGCTATAGCAAAATGGATAGTGGTCTACACTTAATGACTAGAGAAAA
GGAGAAAACTAAGATATAACCAATTTGCATTAATAATAACAAAAATCATT
ATTTATTTAATGATATGTTCTGATATTGTACTAATCTGATGAATTTCTCC
TTGCATATTTATAGTAATACAATAAATAAATGCTCTCTAGTATCTTGACA
CATATATTTAACTAGTAGAAATATAATAAAAATCTTTAAGTTGTTTTTAT
TCAGATATTGTGTGTTGTTTTCTTGTGACATCCTTCCATTCGTAAATGAG
GAAAGTGATCATATTTAGGAAAAATCTACAAGAACACCCTTCCTATTATA
AGGACAGCATCATTTTAGCTCAAATAAAGGCAAATCTAGCCATTGGCATC
ATCTTGGTATATAACTTCTGTTCCATATGTATACTAAAATAATAATAAAA
GTAATATTTTTCTCTCATATTTATATTTCTTTGGGGGGTAAAAGAAGTAC
ATTTGCTAAAGATTTGTCAAGTATTTTTTCTAATAGTAAGGGCAAACCAA
ACTAGTAATATTATTTTCTATATTCAAATATGTCCTTAAAGAATCAGATG
ATTAGTTTATTCT
TCTTTCTTTCCTTTCTTTTTTTTCCTTCCCCCNTNTCTTCTNTACCTAAT
TCCCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGATCAACAGAGTC
AACTAACCTGGACCTTTGGCAGCTTTCAGAGACTGAGACAGTAAGCAAAG
AGCAAACATGGGATGGACCAAGCCTTCCTTCACCACCCCCTCCCCTCGCC
AAAAACCCCCAAACAAACAAACAAAAAACCAATGACACTAGTCACCATAG
GAGACTATACAACTAACCATGCAGAGGAAAATTGACTTGCCATGCACCAG
AGTGGGAAGATGGGGAGGAGGGAAGGCCAACCCTCTCAAAAGAGAGGGGG
AAAGTTCAGGACAGGGACTCTGTGAGCAGGGAAACTGGGATGGGGGCAGA
GTGCTTGCGATGTAACTAAACAACTAAAATTTTTTTAAAAGAAAGAAATA
GTACATAGAATATGTGTCAGTACGCTATTATAATAGAGCCATTTGCTCTT
TACCCTTTCTTCCCTTTTACAACTTGCGGTCATAAACAAATTTTCCGCTA
AACCACAGCGCTAAGATTAAAAAATCCCAATAAATCCAAGCTATATTACT
GCTATCGTAAAAATATCTGTGCCGTTTTGAATGATCATGCCCCTCACACC
TAGAGAATCCATTAAAGGTATTACAGTATGCGCGGTTTCGCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_j09.b1 MSMg01no046_j09.b1 CHROMAT_FILE:
MSMg01no046_j09.b1 PHD_FILE: MSMg01no046_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:46 2005
         (379 letters)



>mm_chr12_97251299_97252077
          Length = 779

 Score =  714 bits (369), Expect = 0.0
 Identities = 372/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctcaatatgtatgaatgataatttcctgctatagcaaaatggatagtggtctaca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcaatatgtatgaatgataatttcctgctatagcaaaatggatagtggtctaca 266

                                                                       
Query: 67  cttaatgactagagaaaaggagaaaactaagatataaccaatttgcattaataataacaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttaatgactagagaaaaggagaaaactaagatataaccaatttgcattaataataacaa 326

                                                                       
Query: 127 aaatcattatttatttaatgatatgttctgatattgtactaatctgatgaatttctcctt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaatcattatttatttaatgatatgttctgatattgtactaatctgatgaatttctcctt 386

                                                                       
Query: 187 gcatatttatagtaatacaataaataaatgctctctagtatcttgacacatatatttaac 246
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 gcatatttatagtaatacaataaataaatgctctctactatcttgacacatatatttaac 446

                                                                       
Query: 247 tagtagaaatataataaaaatctttaagttgtttttattcagatattgtgtgttgttttc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tagtagaaatataataaaaatctttaagttgtttttattcagatattgtgtgttgttttc 506

                                                                       
Query: 307 ttgtgacatccttccattcgtaaatgaggaaagtgatcatatttaggaaaaatctacaag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttgtgacatccttccattcgtaaatgaggaaagtgatcatatttaggaaaaatctacaag 566

                        
Query: 367 aacacccttccta 379
           |||||||||||||
Sbjct: 567 aacacccttccta 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)