Query= MSMg01no047_b07.b1 MSMg01no047_b07.b1 CHROMAT_FILE:
MSMg01no047_b07.b1 PHD_FILE: MSMg01no047_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:22 2005
(603 letters)
>mm_chr12_80686289_80687291
Length = 1003
Score = 1046 bits (541), Expect = 0.0
Identities = 553/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 5 gaattcacatttgaatcattgttgtacaagaaccatatatactctgaggatgggagacag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattcacatttgaatcattgttgtacaagaaccatatatactctgaggatgggagacag 498
Query: 65 cgaagaactgaaatataaagaagtcatagtcacttgaccccatgaaaactgagagtctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cgaagaactgaaatataaagaagtcatagtcacttgaccccatgaaaactgagagtctct 438
Query: 125 gtggttctgaaagattgtgatttctctatgttatgaggataactttggctcttctttcac 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgattctgaaagattgtgatttctctatgttatgaggataactttggctcttctttcac 378
Query: 185 ttgctaattctctgttttgaagggaaaaaaattaactaatgaagactggagaagctgcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgctaattctctgttttgaagggaaaaaaattaactaatgaagactggagaagctgcca 318
Query: 245 catgatatagagccttgctaagcagtctaaagacacaggtactgggactgccaaggccag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 catgatatagagccttgctaagcagtctaaagacacaggtactgggactgccaaggccag 258
Query: 305 taggcagccagagaaaagtccatgacctttctaatgacaacagtctctcccaattgagag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taggcagccagagaaaagtccatgacctttctaatgacaacagtctctcccaattgagag 198
Query: 365 tgaagaactcagaatcggaaagttcagggcctaattctggttttcctagtcaccactgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgaagaactcagaatcggaaagttcagggcctaattctggttttcctagtcaccactgta 138
Query: 425 -ggatattgagcaaagtcgcattttgagtaacagcttccctgtggcaaaatggggataat 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 137 ttgatattgagcaaagtcgcattttgagtaacagcttccctgtggcaaaatggagataat 78
Query: 484 agtacctaactgatggaacaagtacaagaattcaatgtcctatcgaaggtggacatatta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 agtacctaactgatggaacaagtacaagaattcaatgtcctatcgaaggtggacatatta 18
Query: 544 actggtagtattacagc 560
|||||||||||||||||
Sbjct: 17 actggtagtattacagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_b07.g1 MSMg01no047_b07.g1 CHROMAT_FILE:
MSMg01no047_b07.g1 PHD_FILE: MSMg01no047_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:22 2005
(513 letters)
>mm_chr12_80642993_80643905
Length = 913
Score = 977 bits (505), Expect = 0.0
Identities = 511/513 (99%)
Strand = Plus / Plus
Query: 1 aaatggatgtacactcttacatatttatctaagagtctaattcagagaaggatagtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatggatgtacactcttacatatttatctaagagtctaattcagagaaggatagtgtta 260
Query: 61 gttctcatttgcatggtaaactaggggtgactggagccatttgtaattaatacattttta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctcatttgcatggtaaactaggggtgactggagccatttgtaattaatacatttttt 320
Query: 121 aaaatcttttgccactgaagactctgtgatgacgaactaggattacactgttgtactcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatcttttgccactgaagactctgtgatgacgaactaggattacactgttgtactcca 380
Query: 181 caaaaagatgattgtcatcttgttattcggccttggggattccctggctctagaacccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaagatgattgtcatcttgttattcggccttggggattccctggctctagaacccaa 440
Query: 241 gatttattttccctaatatcagtctttgagtgtagtgacacctaactgggactttacctt 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttattttccctaatatcagtctttgagtgtagtgacacctaactgggactttacctt 500
Query: 301 tatgctgaatattttgcctagaaaatcctaatcagtatttcagagatgacaagatcaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgctgaatattttgcctagaaaatcctaatcagtatttcagagatgacaagatcaggg 560
Query: 361 tgattcttagatctaagtaccttccgtgggatgagagtcacatgagataggagtagtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgattcttagatctaagtaccttccgtgggatgagagtcacatgagataggagtagtttt 620
Query: 421 gttttgtattgatccataggcataagtagtgtttgctcttcagtagaagggactcggata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttgtattgatccataggcataagtagtgtttgctcttcagtagaagggactcggata 680
Query: 481 ggactcagctttctcatcatatggaagagcagt 513
|||||||||||||||||||||||||||||||||
Sbjct: 681 ggactcagctttctcatcatatggaagagcagt 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
