BAC Information

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BAC

Clone NameMSMg01-047D02
Chromosome12 (Build37)
Map Location 83,549,461 - 83,549,990
singlet/doubletsinglet
Overlap geneSipa1l1
Upstream gene1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
Downstream geneLOC432675, EG666911, Rgs6, Dpf3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047D02.T7 (MSMg01no047_d02.b1)MSMg01-047D02.TJ (MSMg01no047_d02.g1)
ACCAG277367AG277368
length687679
length of high quality
(start - end)
526 (45 - 570)285 (58 - 342)
definitionCHROMAT_FILE: MSMg01no047_d02.b1 PHD_FILE: MSMg01no047_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:30 2005CHROMAT_FILE: MSMg01no047_d02.g1 PHD_FILE: MSMg01no047_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACCTTGAACTTTGACTTTTGAAGAATCCTTTTTACTCCATCTGGC
TCTGCAAAGAGTCCTCTGTGCTTTCCCTACCGAAGACTTAGCTTTCTACT
CCGTGAGTCTTCAGGTCACATGGCATAACTAGAACTTCCCAGGAAGCTGT
TGGCAGGTCACAGGGGATGGGGGAAACCTGACAGGTCCTCAGCCTTGGGT
TCTGGGGATGGCAACACCCAGCTGTGTGATCCTCAAAGACCACCACACAC
ACTTGGTGTTCTGCTAGCACGGTATGCTTAGCATTTTAACAGAGCTGCTT
CCCCGTCCTAATGGAAGTTGAGACGGTAAGCTCAGGCTTTGAAACATGGA
GTCTCCTCAACATTTACACATTTAGACTAGCTGAGGTATGAGCACTGTAT
GTTGCTGCAATGGCCTGCTTAGATCCTGTATTACCTATATACACATGCAA
CTCAACACACACACACACTGGTAGTTCTCCTATGGAAACCCTAGAAGAGA
CCTTGAGACCCCGCGCACCGTGTGACTGTGTGACTGCTAACATGCCTCCT
GTGCTACCAAAGGTCATTTTCACACATTACTGCTAACTCTTTTGTCCTCT
TTACCAGAGGAAGCTGCTGATTGGCCATCACTCCAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGTCTCCTCCTGACTGCCTTCTGATTAAGATGTAGAATTCTC
AGCTCCTCCAGCATCATGTCTGCCTGCAAGCTGGCATGGCAATAATGGAC
TAAACCTCTGAAACTTTAAGCCATCCAAAATTAAATGTTTGCCTTTATAA
ATGACGCCTTCGGTCATGGCATCTCTTCACAGCATAAAAACTCTATGACA
GAAGTTTGTATCAGGAACTGACTTATTGCTATGATAGGCCTGACCACGTT
ATTGCTTGTAAGAATGCGAATTTTGGAACTTTGGATTTGGAAATTATTGT
AACGCTTTCACACCCGCGCGCTTAATGGGCCATCCTACTTGGTATATTGG
AAGACATTGATCCTGAAAGTGATTTGAATTCAAGAGGTTTCATAGCAGAA
TAATTTTATCATGCCGCCTATTCTTGTGATATTTTGGTAAAGAATGAAGC
TGCCTTTTGCCCTTGTCTAAAGAGCTTGCCTGACGCTAAAGTAAAGAGCA
TTCAGACTAATTGCTTTGATGAAGGAAATCTCTAATAAACCCTAGCAAAG
AACGTCATGATGTTCAATCTTGTCCAGATTCCTTTGACCTGACCTTTCCA
GATCTGATTTCAAAAATATTCCCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_d02.b1 MSMg01no047_d02.b1 CHROMAT_FILE:
MSMg01no047_d02.b1 PHD_FILE: MSMg01no047_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:30 2005
         (526 letters)



>mm_chr12_83549263_83550190
          Length = 928

 Score =  864 bits (447), Expect = 0.0
 Identities = 507/533 (95%), Gaps = 13/533 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaccttgaactttgacttttgaagaatcctttttactccatctggctctgcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 199 ggaattccaccttgaactttgacttttgaagaatcctttttactccat---gctctgcaa 255

                                                                       
Query: 64  agagtcctctgtgctttccctaccgaagacttagctttctactccgtgagtcttcaggtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agagtcctctgtgctttccctaccgaagacttagctttctactccgtgagtcttcaggtc 315

                                                                       
Query: 124 acatggcataactagaacttccc-aggaagctgttggcaggtcacag-------gggatg 175
           ||||||| ||||||||||||||| |||||||||||||||||||||||       ||||||
Sbjct: 316 acatggcgtaactagaacttccccaggaagctgttggcaggtcacagccataaggggatg 375

                                                                       
Query: 176 ggggaaacctgacaggtcctcagccttgggttctggggatggcaacacccagctgtgtga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 376 ggggaaacctgacaggtcctcagccttgggttctggggatggcaacacccagctctgtga 435

                                                                       
Query: 236 tcctcaaagaccaccacacacacttggtgttctgctagcacggtatgcttagcattttaa 295
           |||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 436 tcctcaaagaccactacacacacttggtgttctgctagcaaggcatgcttagcattttaa 495

                                                                       
Query: 296 cagagctgcttccccgtcctaatggaagttgagacggtaagctcaggctttgaaacatgg 355
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 496 cagagctgcttccccgtcctaatggaagttgagacggtaagcttaggctttgaaacatgg 555

                                                                       
Query: 356 agtctcctcaacatttacacatttagactagctgaggtatgagcactgtatgttgctgca 415
           ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 556 agtctcctcaacatttaaacattaagactagctgaggtatgagcattgtatgttgctgca 615

                                                                       
Query: 416 atggcctgcttagatcctgtattacctatatacacatgcaactcaacacacacacacac- 474
           ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| 
Sbjct: 616 atggcctgcttagatcctgtattagttatatacacatgcaacgcaacacacacacacaca 675

                                                                
Query: 475 -tggtagttctcctatggaaaccctagaagagaccttgagaccccgcgcaccg 526
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 676 ctggtagttctcctatggaaaccctagaagagaccttgagaccccgagcaccg 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 928
Length adjustment: 10
Effective length of query: 516
Effective length of database: 918
Effective search space:   473688
Effective search space used:   473688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)