BAC Information

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BAC

Clone NameMSMg01-047N14
Chromosome12 (Build37)
Map Location 96,687,052 - 96,687,290
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047N14.T7 (MSMg01no047_n14.b1)MSMg01-047N14.TJ (MSMg01no047_n14.g1)
ACCAG277775AG277776
length829688
length of high quality
(start - end)
148 (113 - 260)240 (110 - 349)
definitionCHROMAT_FILE: MSMg01no047_n14.b1 PHD_FILE: MSMg01no047_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:15 2005CHROMAT_FILE: MSMg01no047_n14.g1 PHD_FILE: MSMg01no047_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCCTCCCCCCCTTTTTTTTCTTTTTTTTCCGCTCCCTTGTTCTCCC
TCCTTTTCCTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCATTTACTCTTCATGAATCAGAAAGAAAAGA
AAGGAAAAGAACTAAAATATTTTACACAGGAAATATGCACAGGCAAACAC
ACACTCATAAACACATGCACACACACACACACACACACACACACACACAC
TGACCTGACCTGATCTAACCCACTTTCTCATCAACTCTACAATGTACTCA
TGCATACTTACATACATACTCATACATCTACACATTTATGTATAGGCAAA
CAGACATATACTTACATACACATGGTGTATGGCCCAAAGCTCCTCCCTGC
CACACTTTATTCTTTCGATCTGGCCTTCTTTTACCTTACCTATACAAAAG
CCCATTTGAAAACCACCTCATACACTAAACGTTACACCCCTGGTGAGTCA
CAGACTATGTTGATATTAACGCCAAAGACGTAGTTTAAGCTCATAGCTTA
CAATCACATTTTCCCCCGTAAACTCTGTACATTGCTCTTCTCCTAATCAA
AGCGCCACATCTGAGGCTTTCTTCTTATGGCACACTGTCCTATATTAGTA
TCGCACCCCCCCTTGTATCCTCTTACTATGGCCCCACTATTTCCTTTTCC
CAATCTCTTCCCCTTTTTTATCTCGTCTTATTATCCCCACCTCTTAATTC
CCTTACCACTAATGTTCTACTTCTCTTCTATCTATACTCAATTTTCTTAC
CTACTCGCACCGTTCGTTCTCTATACCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACAGAAATAAAGCAACATTCTCAAGGCCTATCATAGAGTGAA
GATATTACACTTAGGACCCATCAATCCTAGAGCCTATTCCTTAAAGCATA
ACTGAACTAAATTGTGAAAGTGGAAATAGAATTGTGACAAAGAAGTAAAA
GTCAAATGGAGAATGTCAAATAGATATGATTAATTTTTCTATTGTCTGAA
AAACGGGAGGGATTTGCTCATATTTCAGTGCTGAAGAGTTATAAACATAG
GAAACAAAATTGTGGAGTTGTCACTGAAGTATGCTGAGAGACGGTGTGTT
GTCTACTTGAATATTCTAATATTTTTATTTCTTTATTTTTCTGAAACAAG
GATTCCCTTGTTTCACATGTGATCATGGCTTGACCTCACTTCAATCTTAC
TGTTTCAGTCTGACCCATCAAAAGAGAAATAAATTTTTCATTTCTCTTTT
TCCTCTTCCTCTTCCTCCCTCTCCCTCTCCTCCCCCTCCCTCTCCCTCTC
CCTCTCCTCCTCCTCCTGCTTCTCTGCTTCTTCTGCTTCTTCTTCCCCTT
CTCCTTCCTCCTTCTTCTTCTTCCTCCTTCTCCTAGACATCCTCATCCTT
TCTCCTATAACTCCCTTCTGAAGAAGCCTCCTGCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_n14.g1 MSMg01no047_n14.g1 CHROMAT_FILE:
MSMg01no047_n14.g1 PHD_FILE: MSMg01no047_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:15 2005
         (240 letters)



>mm_chr12_96686852_96687491
          Length = 640

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaggacccatcaatcctagagcctattccttaaagcataactgaactaaattgtgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 cttaggacccatcaatcctagagcctattccttaaagcataactgaactaaattgtgtaa 380

                                                                       
Query: 61  gtggaaatagaattgtgacaaagaagtaaaagtcaaatggagaatgtcaaatagatatga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 gtggaaatagaattgtgacaaagaagtaaaagtcaaatggagagtgtcaaatagatatga 320

                                                                       
Query: 121 ttaatttttctattgtctgaaaaacgggagggatttgctcatatttcagtgctgaagagt 180
           | ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 319 tcaatttttctattgtctgaaaaacaggagggatttgcttatatttcagtgctgaagagt 260

                                                                      
Query: 181 tataaacataggaaacaaaattgtggagttgtcactgaagtatgctgagagacggtgtg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tataaacataggaaacaaaattgtggagttgtcactgaagtatgctgagagacggtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)