Query= MSMg01no048_m19.b1 MSMg01no048_m19.b1 CHROMAT_FILE:
MSMg01no048_m19.b1 PHD_FILE: MSMg01no048_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:08 2005
(746 letters)
>mm_chr12_32975208_32976353
Length = 1146
Score = 1274 bits (659), Expect = 0.0
Identities = 711/731 (97%), Gaps = 7/731 (0%)
Strand = Plus / Plus
Query: 20 gaatt-aagaacacaccaaggagaccatta---actgtgacctagttgtttttaccctga 75
||||| ||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct: 219 gaattcaagaacacaccaaggag---attatgcactgtgacttagttgtttttaccctga 275
Query: 76 gatgcagcatggttcaacatacatagcccaaaacttataatgcaggatataaatagactt 135
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 276 gatgcagaatggttcaacatacatagcccaaaacttataatgcaagatataaatagactt 335
Query: 136 gaggtaaaaacagaatcacatggtcatctctatcaatgctagtcagaccctcggcaacac 195
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 336 gaggtaaaaacagaatcacatggtcatttctatcaatgctagtcagacccttggcaacac 395
Query: 196 tcaacatcgctttatgataaaatcccagaacaagctaggaatagaaagaacatagttaaa 255
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcaacatcactttgtgataaaatcccagaacaagctaggaatagaaagaacatagttaaa 455
Query: 256 cacaacagaggttgtatatgaccaacccatagttaatctcataataaatgaggaacagct 315
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 456 cacaacagaggttgtatatgaccaacccatagttaatcttataataaatgaggaaaagct 515
Query: 316 cagagcacttgtcttatagtctgggtggagtgaaggatacacactccttccatccttatt 375
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cagagcacttttcttatagtctgggtggagtgaaggatacacactccttccatccttatt 575
Query: 376 gcatacagtacacaatggtttaaccagaggaataagacaagagaattatgtttgctataa 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcatacagtacacaatggtttaaccagaggaataagacaagagaattatgtttgctataa 635
Query: 436 ctattcgtctacaagactctgtgtgaatagaagtccttactacccttgaagcatacaccc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctattcgtctacaagactctgtgtgaatagaagtccttactacccttgaagcatacaccc 695
Query: 496 aggactaaaattgctgggtcacagaatggctctgtctatcttacatggattttgaatatg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aggactaaaattgctgggtcacagaatggctctgtctatcttacatggattttgaatatg 755
Query: 556 acagggaaactggttacctggagaataacgaacagggtgattgaatacagtggacaaaac 615
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 756 acagggaaactggttacctggagaataatgaacagggtgattgaatacagtggacaaaac 815
Query: 616 gctgtaaccatgggtctcctaaattctacagtgcacaccgctgagtaaggagtcaggagt 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gctgtaaccatgggtctcctaaattctacagtgcacaccgctgagtaaggagtcaggagt 875
Query: 676 gattaatccaaagactggtgaaatattcccgcacagaaataccagtttatcaggttcaca 735
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 876 gattaatccatagactggtgaaatattccctcacagaaataccagtttatcaggttcaca 935
Query: 736 ttgctagggtg 746
|||||||||||
Sbjct: 936 ttgctagggtg 946
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space: 836096
Effective search space used: 836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_m19.g1 MSMg01no048_m19.g1 CHROMAT_FILE:
MSMg01no048_m19.g1 PHD_FILE: MSMg01no048_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:08 2005
(721 letters)
>mm_chr12_33130184_33131303
Length = 1120
Score = 1174 bits (607), Expect = 0.0
Identities = 652/667 (97%), Gaps = 1/667 (0%)
Strand = Plus / Minus
Query: 1 aagcaagaacatgaatagaatgccctcccctgcccttattatctctgtggcaaaggaata 60
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct: 666 aagcaagaacatgaatagaatgccctcccctgtccaaattatctctgtgggaaaggaata 607
Query: 61 tttttaaaaggaatattctcagctcttttcacatggccaaagacaataaaatttaacagc 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 606 tttttaaaaggaatattctcagctcttttcacatggccaaaggcaataaaatttaacagc 547
Query: 121 acagatattccctcactgtacttgtatttgatgaagttaactgtaaacattacttcatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acagatattccctcactgtacttgtatttgatgaagttaactgtaaacattacttcatgt 487
Query: 181 tcagcttgtttaaataatgaaacaaataactgctttgtttgcactactcttgagctcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcagcttgtttaaataatgaaacaaataactgctttgtttgcactactcttgagctcaaa 427
Query: 241 agagtgctatgtttttcccccacacaggtgtttggaatatatacttcaactttaaagatt 300
||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||| |
Sbjct: 426 agagtgctatgtttttcccccacacaggtttttgaaatatatacttcaactctcaagact 367
Query: 301 tagcctcagtggccaaaggatggatcatatatataaagacttgaatacatgcatacacac 360
||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 366 tagcctcagtggccaaaggatggatca-acatataaagacttgaatatatgcatacacac 308
Query: 361 taaataaatgtaataaaaatgccaaagataatattaggatagaaaaataagaatgggagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taaataaatgtaataaaaatgccaaagataatattaggatagaaaaataagaatgggagt 248
Query: 421 cacctcatggcaaaggagaatgttttaagaagaaataaaatttctgcttaaataaaataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cacctcatggcaaaggagaatgttttaagaagaaataaaatttctgcttaaataaaataa 188
Query: 481 aaattatatgattttatagtgtgtgcaatagtaataataaagtgtcttcaaaacatcaaa 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aaattatatgactttatagtgtgtgcaatagtaataataaagtgtcttcaaaacatcaaa 128
Query: 541 catggtcatcctaaccttgacagcagaaggagggaatcttccagttaattctagcaccaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 catggtcatcctaaccttgacagcagaaggagggaatcttccagttaattctagcaccaa 68
Query: 601 ctatcagctaaatctttctagtaggtcaatagcttagtgcaaaaccacagtagaaaggat 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 67 ctatcagctaaatctttctagtaggtcaatagcttagtggaaaaccacagtagaaaggat 8
Query: 661 attgggt 667
|||||||
Sbjct: 7 attgggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1120
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1110
Effective search space: 789210
Effective search space used: 789210
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
