BAC Information

Click to search

BAC

Clone NameMSMg01-049M04
Chromosome12 (Build37)
Map Location 61,593,196 - 61,593,757
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049M04.T7 (MSMg01no049_m04.b1)MSMg01-049M04.TJ (MSMg01no049_m04.g1)
ACCAG279091AG279092
length1,2461,242
length of high quality
(start - end)		281 (42 - 322)737 (76 - 812)
definitionCHROMAT_FILE: MSMg01no049_m04.b1 PHD_FILE: MSMg01no049_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:06 2005CHROMAT_FILE: MSMg01no049_m04.g1 PHD_FILE: MSMg01no049_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTCTTTTTTAGTATTACCGTATTTATTATATTTATATATCCAATGCT
ATCCCAAAAGACCCCCCACCCTCCCACACCCATTTCACCACCACCCACTC
CCACCTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGGTCTGCA
TGACCAATGGGCCTCTCTTTCCACTGATGGCCGAACAGGCCATTTTCTGA
TACATATGCAGCTAGAGACAAGAGCTCTGGGGGTGGGGGGAGGGAGGTAC
TGGTTAGNTCNCNTTGTTGTTCCTCCTATNGGGTCGCCGATCCCCCCCCG
CTCCCTAGGTACTTCTTCCTGCTCCTCCCTTGGTCACCCTCTGATCCATC
CATTATCTTACTGTCAGCATCTATTTCTGTGTTTCCTAGGCCCTGATATA
CCCTCACAAGAGACAGCTATATCAGGGTTCTTTCAGCAAAATCTTGTAGT
GTATTCAATGTTGCCAGTGTTTGGAAGCTGATCACGCAATGCATACCTCA
TGTATGTAATTCCCTAGATGTACCATCCTTTTCTCTTATCCTCCAAACCC
TGACTCTGTAACTTCCTTCCATGACAACCCTTCATCCTATTCTCTATAAG
GATCAAATTTATCCTCAACTTGCCTATTGTTCTTCTTATTCTTCTTTTGC
TTACACATACGCAATCTTATATCTTCATTACTCTAAACTCCCAGGTCTAT
TTAATCTCTCTTCAGTTATCACTTTTATCTTTTACATACCTTTTATTAAA
TAAACAATCTTATTCCCCCCTATCGTCCTCTCCTTCATTCCTCTACTCTG
CCTTCTAATCTTCCCAAAACTTCTTTACTCTCTTTTTTCTTCTCTTTCCA
TTATTCTTATAATATATTATCCTCTCTCTCTTCTTTCAATCTTACATCAT
TATTAAATATCCATCTTCTCTTTTATCTATCTTCACCGTACTTTTTTATC
ATCTTTATTACTTCTCTTTATTATTCATTCATCATATATAATTCTTTCTA
CATATTATTCTTTTACTTTCATAATCCCATTAACACCATTTTCCATTAAG
TCCCTCATCATATTAAAACTATATCTATAATATATCTCTACACTTTTCTT
CTTAATTACAATAATCATACCCCACACATAATTCAATCTTTTTATATTTT
TCATTCAACTCAATATACTATCAATCTTTACTACATATTAAATATT

CCAGTTTTTTNNNNAAGATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTTAGTAGATGTGCTTTTCTT
TGGTTGTTTCCCTTTGAGTTGAAGAAAGACAAAAAATGCAGTCAGGTGGA
TAAAGTTGAGGGAGGATCTTGAAGGTCTTGGGAGAGGGGAAAGATTCAAG
ATACATTCTATGAAAACTGTAAAAGATGATACTAAATAAGTAAAATATGT
TAAATGTGAATAACTTGTGAAAATAGTGCTAGCCACCTGTAGAGTTGTAT
ATAAAGATCATGTGAAATTAAATTACTACAAAAATAAAGAAAATATGCTT
TTAAATATGTAACCAATAGAAATGATAGTGAAGGATTTTGTATTCTCCTT
GACTTGGTGCTTTATCAGCTGATTTAAGATACATAAGGAGGGCTGGTGAG
ATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTT
CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCTTAAGGAGATCTG
ACTCACTCTTCTGGAGCGTCTGAAGACAGCTACAATGTACTTCCACATAA
CAAATAAATAAATCTTTTAACAAAAAGATACATAAGGAAAAGGAATGAAA
ATATAAAGAAGTTAAAACATTCTCCCTGAAAGTAAGCTACCTATAAAGAT
ACCAAGCAGGGAAAATACATGTTTTTCACTCCAGAAGACCCAACAAGCAG
CTGAAAGAGTCAGATGCAGACATTTGCACCCAACCAATGGACAGAAACAG
CTACCCCTGTTGTTGAATTAGGGAAAGGCTGAAAGAAGCTGAGGAAAAGA
GCAATCCTGTAGGAGACCCCACAGTCTCAATTAATCTGAACCCCTGAGAT
CACGCAGCCTATACCCACTGATATGATTCCCCCAATAGCAGAGAACTGCC
TGGTTTGGTTTCATCAGAGAGAAGCAACTAACCCTTTAAGAGACTGAAGG
CCCCAGGGAATTTAAAGGCCAGTGTGGGGTGTAAAAGTGGGTAAATCTCC
ATTGTAAACATGCGTTTTTTTAAATCATTCTAGTTATTTCTTTACTTCCT
TAACTTTACTTATTATTTTTTTTTTTTAAGATTTTNATATTTTTATTTAT
AATATTATTTTTAAATTTTAAANTGTTAATTTTATTTGNTTAATATTTAT
GTAATTGAAAATTTTTTATATTTGTTATTAAATATTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_m04.g1 MSMg01no049_m04.g1 CHROMAT_FILE:
MSMg01no049_m04.g1 PHD_FILE: MSMg01no049_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:06 2005
         (737 letters)



>mm_chr12_61593194_61594330
          Length = 1137

 Score = 1027 bits (531), Expect = 0.0
 Identities = 555/563 (98%), Gaps = 1/563 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   tttagtagatgtgcttttctttggttgtttccctttgagttgaagaaagacaaaaaatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttagtagatgtgcttttctttggttgtttccctttgagttgaagaaagacaaaaaatgc 505

                                                                       
Query: 65  agtcaggtggataaagttgagggaggatcttgaaggtcttgggagaggggaaagattcaa 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 agtcaggtggataaagttgagggaggatcttgaaggtcttggaagaggggaaagattcaa 445

                                                                       
Query: 125 gatacattctatgaaaactgtaaaagatgatactaaataagtaaaatatgttaaatgtga 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 gatacattctatgaaaactgtaaaagatgatactaaatgagtaaaatatgttaaatgtga 385

                                                                       
Query: 185 ataacttgtgaaaatagtgctagccacctgtagagttgtatataaagatcatgtgaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataacttgtgaaaatagtgctagccacctgtagagttgtatataaagatcatgtgaaatt 325

                                                                       
Query: 245 aaattactacaaaaataaagaaaatatgcttttaaatatgtaaccaatagaaatgatagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattactacaaaaataaagaaaatatgcttttaaatatgtaaccaatagaaatgatagt 265

                                                                       
Query: 305 gaaggattttgtattctccttgacttggtgctttatcagctgatttaagatacataagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaggattttgtattctccttgacttggtgctttatcagctgatttaagatacataagga 205

                                                                       
Query: 365 gggctggtgagatggctcagtgggtaagagcacccgactgctcttccaaaggtccagagt 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aggctggtgagatggctcagtgggtaagagcacccgactgctcttccaaaggtccagagt 145

                                                                       
Query: 425 tcaaatcccagcaaccacatggtggctcacaaccatccttaaggagatctgactcactct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tcaaatcccagcaaccacatggtggctcacaaccatccttaaggagatctgactcactct 85

                                                                       
Query: 485 tctggagcgtctgaagacagctacaatgtacttccacataacaaataaataaatctttta 544
           |||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 84  tctgaagtgtctgaagacagctacaatgtacttccatataacaaataaataaatctttaa 25

                                  
Query: 545 acaaaaagatacataaggaaaag 567
           | |||||||||||||||||||||
Sbjct: 24  a-aaaaagatacataaggaaaag 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1137
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1127
Effective search space:   819329
Effective search space used:   819329
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |