BAC Information

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BAC

Clone NameMSMg01-051D06
Chromosome12 (Build37)
Map Location 35,085,340 - 35,085,494
singlet/doubletsinglet
Overlap geneHdac9
Upstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051D06.T7 (MSMg01no051_d06.b1)MSMg01-051D06.TJ (MSMg01no051_d06.g1)
ACCAG280041AG280042
length1,185809
length of high quality
(start - end)
334 (32 - 365)154 (132 - 285)
definitionCHROMAT_FILE: MSMg01no051_d06.b1 PHD_FILE: MSMg01no051_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:34 2005CHROMAT_FILE: MSMg01no051_d06.g1 PHD_FILE: MSMg01no051_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGGCGCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATT
CTAATAGGAGAAATAAAACCTAGTAAAGAACTAAACAATTACCTTAAGAA
ACATCCGCACGTCAGGAATGGTGGTCCCCCCTGTAAATCTCTGCCTTTGA
GAAGCGAAGACAGGAGGACTGGCATGAGTTCAAGACTGCCAAGTAAAATT
GAACCTCAAAAATGGGGTGGCAGTGGGAGCTCAGCAGTTAAGAGCACTGG
CTGTTCTTCCAGAGGACCCGGATTCAATTCCTAGCACCCACATGGCAGCT
CACAGCTGCTTGTAACTCTAGTGTCACAGAGCTTCTAATGTCCTCTTCTA
AACTCTATGCAGCAGAGTGCCAGGCATGTACATTTAAAGGCAAAATATTT
TTTTCTATTATATGCCATATATCATATCTTTTATATAATAAAGATGCCAT
CTTTTTTTCTCCCCCCCAGAAATAATAAATACTCTCACCAAAAAAGAGTG
TCTCTTTCTATTTTTCTTTATATTCTGGTCAAATTAATCCTCTCTACTTC
CCAATACTATCCATATCTGAAAGAGTGACATGTCCCACTCTCTGCCTGTC
CATTAAGAGAATGTATCATAATAGTTCCTATATGTTATTTGCTTATGTCC
TTTGTATATTTGTTTAGTTTCTTTCTTTCATTTTTTTTTATCTTCTTTTT
TGCCATATATATTGTTCATCTATTGTTTATTGTCTATTTTTTCTTCTTTT
CTCTCATCTCTACTATTCTTCTTATCTTTTTTTTTTTTTCTCCCTTTCTT
TTTCTTCTTTTTTTTTCTCTTTTTTTTCTTTTTTTTCCTTTTTTTTTTTA
TTTTTTTTTTTTCTTTTTTTTTCCTTCTTTTTCTTTTCTTTTCTTTTCTT
TCTTTTTCTTTTTATTCCTTTTTTGCTTTTTTATTTCTTTTTCTTTTTTT
CTTTTTTTTTATTTTCTTTTCTCTTTTTTTCTTCTCTCTTCTTTTTCATT
TTATTCTTTTCTTCTTTTTTTTTATTTTTCTTTTTTTTCCTTTATTTTCT
TTCCATTTCTTCTCTTTCATATTTTTCTATTTTTCTCCTTTTTTTTCTTT
TTTTTTTCTTTTTTTTTTTTCCCTTTTATTTATTTTCTTCTTTTTTTCAT
TTCTACTTCCTTCTATTTTAATTTTTTTTCTTTTC
NNNNNNNNNNNNNNNNNNNNNNGGGGNNNGGGGGGGGGGGNNNNTTTTTT
TTGTTNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTCTGTGTGGACATCT
TTAGCAAGGAGTGAAGACAACATGTGGGATTTGATTACAGTTCAGGCGGG
AGGACAAAGAGTGTGGTTTGAGAGTTGCTAAGTTTCTAAATGTATCCATT
CACTGCTCAGCTAATAATTAATAATAATAATAATAATCCAGTAAGAAGTG
TTGGCGAAAACAAAATGTTTAAATGGAATGTTATTACTCTTCTGGCTCTT
TGTGACCCATTCTATTTTTGAGATTGTCTTATTTTTAATCTTGTACGTGC
CTATATGCTCTGTATATCTTGTCTACCTGCTTCTCTTCTATTTTTTTTTG
GCTATCTTTTTATTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCGCCTCTT
TTTTTTTTCTTATAAACCATATTAGGTATTATCTTTAACTTATCTCCTTC
TATCTTTCCGTTCTTTTTTATCTTTTACTTAATACGTCCTTTTTATCTCT
TCTTTTCTCCTCTCTTTCCCTTTTCCCTTTTTTATCCCCCCCTCCCCTTT
CCCGTCTCCCCTTCTACTTCGCTGCTCTCCCCCCTTTCTCATCTCTTGTT
GTCTCTCTGCTTCTTCGCTTCCTGTCATTTCTCCCCTTTTCTTCTTTTCC
TTCTATCCCTTTTCCTATCTCTCACCTTTTCTTTTTTCCCCTCTTTTTCT
TTCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_d06.g1 MSMg01no051_d06.g1 CHROMAT_FILE:
MSMg01no051_d06.g1 PHD_FILE: MSMg01no051_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:34 2005
         (154 letters)



>mm_chr12_35085164_35085718
          Length = 555

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtctgtgtggacatctttagc-aaggagtgaagacaacatgtgggatttgattacag 59
           ||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 331 aatgtctgtctgggcatctttagcaaaggagtgaagacaacatgtgggatttgattacag 272

                                                                       
Query: 60  ttcaggcgggaggacaaagagtgtggtttgagagttgctaagtttctaaatgtatccatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttcaggcgggaggacaaagagtgtggtttgagagttgctaagtttctaaatgtatccatt 212

                                              
Query: 120 cactgctcagctaataattaataataataataata 154
           |||||||||||||||||||||||||||||||||||
Sbjct: 211 cactgctcagctaataattaataataataataata 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 555
Length adjustment: 8
Effective length of query: 146
Effective length of database: 547
Effective search space:    79862
Effective search space used:    79862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)