BAC Information

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BAC

Clone NameMSMg01-052F06
Chromosome12 (Build37)
Map Location 58,924,055 - 58,924,481
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052F06.T7 (MSMg01no052_f06.b1)MSMg01-052F06.TJ (MSMg01no052_f06.g1)
ACCAG280844AG280845
length699697
length of high quality
(start - end)
482 (40 - 521)288 (64 - 351)
definitionCHROMAT_FILE: MSMg01no052_f06.b1 PHD_FILE: MSMg01no052_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:55 2005CHROMAT_FILE: MSMg01no052_f06.g1 PHD_FILE: MSMg01no052_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGGACCGCGGAATTCCC
TGTATTCCCATATGGTACCTCTTTAACTCACGCTGAGTTTGTCTTTTGAA
CACCAAAAAGAAGGAAAGAAATTTTTAATCCATTTACCATTATTATCACA
TCATACAGTAAAGTGGGTAACCCATAAATAATTGTGAGTGATTTCTCACA
ATTCTAGAGCCAGGGATGTTTGTGATAGAGACCCTGCCTGGGTGTTCGTT
GTGTGTGCTGAGGGCCTGGTCTATACTTCCAAGGCAGCACCTTGAACCCT
GAGGCCCGACTCCAACTGTCCCTTTTCTAAAGCTGAGTCCTCAAGGCCTA
AACAGCTCATAAAACCCCTGCCTCTCCTTAGCTGTGCGCCTCGGAGTAAG
CTCTCTGGTGGATTTTGGAAAGAGCATGAACATTCCAACTCTCGCACATA
TCTTACAAGTTTTGGTTACTCTGTGTCCCACACCATCACCTCTTTCTGTG
ATATTTTCATGCTTTCCCAGACTTGGGCACATCTGTCTTCTTTCCTTTGA
CTTTAATTAATCTAACATTTAAGCTGACACTCTTTTCTATACTCCTCTAT
GAACCTCTTAAATTAAGGTTTTATTACCGAGCCTTTCCAGTGGAAGATTT
TTTTTTTCATTTCCAGTCGTTTTTTACGTTTCCTCAAATCCCCCAGTAG
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAAACCGAATGGCTGAGAAGCACCTGAA
AAAATGTCCAGCATCCTTATTCATCAGGAAAATGCAAATCAAAACAACCC
TGAGTTTCCATCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCCGGC
CGGGTGTGGTGGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCA
GGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGG
ACAGCCAGGGTTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAA
AAAATATATATACCACCCTTCCGGTAACAGTAGATGCTGTCAAGGATGTG
GAGAAAGAGGAATACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAA
CCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATATTACT
ACTGGAGGATGCCATAATACCTCTCCTGGGCATATATCCATAAGATGTTC
CAACTGGTAAGAAAGATACATGTCCCACTATGTTCATAGTAGCCCTTATT
TATAATAGCCCGAAACTGGAAAGAACCCATATGCCCCTCAACAGAGGATT
GGCTACAAACAATGCGGTACATTTACACAAAGGAGTACTACTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_f06.b1 MSMg01no052_f06.b1 CHROMAT_FILE:
MSMg01no052_f06.b1 PHD_FILE: MSMg01no052_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:55 2005
         (482 letters)



>mm_chr12_58923600_58924481
          Length = 882

 Score =  803 bits (415), Expect = 0.0
 Identities = 424/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 56  tttgaacaccaaaaagaaggaaagaaatttttaatccatttaccattattatcacatcat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tttgaacaccaaaaagaaggaaagaaatttttaatccatttaccattattatcacatcat 823

                                                                       
Query: 116 acagtaaagtgggtaacccataaataattgtgagtgatttctcacaattctagagccagg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 acagtaaagtgggtaacccataaataattgtgagtgatttctcacaattctagagccagg 763

                                                                       
Query: 176 gatgtttgtgatagagaccctgcctgggtgttcgttgtgtgtgctgagggcctggtctat 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gatgtttgtgatagagaccctgcctgggtgttcgttgtgtgtgctgagggcctggtctat 703

                                                                       
Query: 236 acttccaaggcagcaccttgaaccctgaggcccgactccaactgtcccttttctaaagct 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acttccaaggcagcaccttgaaccctgaggcccgactccaactgtcccttttctaaagct 643

                                                                       
Query: 296 gagtcctcaaggcctaaacagctcataaaacccctgcctctccttagctgtgcgcctcgg 355
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gagtcctcaaggcctaagcagctcataaaacccctgcctctccttagctgtgcgcctcgg 583

                                                                       
Query: 356 agtaagctctctggtggattttggaaagagcatgaacattccaactctcgcacatatctt 415
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 582 agtaagctctctggtggattttggaaaaagcatgaacattccaactctcgcacatatctt 523

                                                                       
Query: 416 acaagttttggttactctgtgtcccacaccatcacctctttctgtgatattttcatgctt 475
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 522 acaagttttggttactctgtgtcccacactatcacctctttctgtgatattttcatgctt 463

                  
Query: 476 tcccaga 482
           |||||||
Sbjct: 462 tcccaga 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)