Query= MSMg01no052_k16.b1 MSMg01no052_k16.b1 CHROMAT_FILE:
MSMg01no052_k16.b1 PHD_FILE: MSMg01no052_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:21 2005
(674 letters)
>mm_chr12_96313152_96314225
Length = 1074
Score = 1212 bits (627), Expect = 0.0
Identities = 658/677 (97%), Gaps = 15/677 (2%)
Strand = Plus / Minus
Query: 5 gaattctttcctatttattttcctcttcagtttataaaatgatatcactttgttgataat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 855 gaattctttcctatttattttcctcttcagtttataaaatgatatcactttgttgattct 796
Query: 65 tgccttgttcatttgagggaaaatactatgacttttctctccttattcttttcttcctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgccttgttcatttgagggaaaatactatgacttttctctccttattcttttcttcctct 736
Query: 125 ccctcaatctctcttccattaaattcatttgtaaaaagcacttagtgctattctagg--- 181
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctctcaatctctcttccattaaattcatttgtaaaaagcacttagtgctattctaggctt 676
Query: 182 ----cttatggttacttattatgatacatatgttcactggcaataatacactcatttaat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ataacttatggttacttattatgatacatatgttcactggcaataatacactcatttaat 616
Query: 238 tttctgattcttctaaaatgggaaaattttgagcatgcttctctggttttgaaaagtgtt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttctgattcttctaaaatgggaaaattttgagcatgcttctctggttttgaaaagtgtt 556
Query: 298 tacatttatatggggaaatatattgggttcaaagtcaaaatgttatacaatcaatatttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tacatttatatggggaaatatattgggttcaaagtcaaaatgttatacaatcaatatttg 496
Query: 358 tataagaaacatttcctgcattgtttcttggtgttgtatatacatggaagacaaattatt 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tataagaaacatttactgcattgtttcttggtgttgtatatacatggaagacaaattatt 436
Query: 418 ccaaagtacccattcttctgactctttccactcagtggatgaaagtgacatgcaaaataa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccaaagtacccattcttctgactctttccactcagtggatgaaagtgacatgca------ 382
Query: 478 ataaataaataaataaataaataagaggtgtttcaaaccaaaagttttgatcttcaccat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 --aaataaataaataaataaataagaggtgtttcaaaccaaaagttttgatcttcaccat 324
Query: 538 ctcctggaggttcatatggtaaataaaggctttgttttaagagtggtgctattgtggtcc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctcctggaggttcatatggtaaataaaggctttgttttaagagtggtgctattgtggtcc 264
Query: 598 agtggtgtaagggtattgggcttttctatgtctaacttgtcccaaaataatgatacggag 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtggtgtaagggtattgggcttttctatgtctaacttgtcccaaaataatgatacggag 204
Query: 658 aactattgtatttaata 674
|||||||||||||||||
Sbjct: 203 aactattgtatttaata 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_k16.g1 MSMg01no052_k16.g1 CHROMAT_FILE:
MSMg01no052_k16.g1 PHD_FILE: MSMg01no052_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:21 2005
(557 letters)
>mm_chr12_96188677_96189633
Length = 957
Score = 1007 bits (521), Expect = 0.0
Identities = 554/575 (96%), Gaps = 20/575 (3%)
Strand = Plus / Plus
Query: 1 atttaaacaaatagatgaaaagttaaggacgtagcagaatgaaaatgaagaacagataaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 185 atttaaacaaatagatgaaaagttaaggacgtagcagaatgaaaatgaagaagagataaa 244
Query: 61 ggttttaaaaattatgagaacaatttttaagaaaaataggttatactgagtagagataaa 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggttttaaaa-ttatgagaacaatttttaagaaaaataggttatactgagtagagataaa 303
Query: 121 caaaaatcaataaataatattaacttactatgttaaacaataagtgataagttaatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caaaaatcaataaataatattaacttactatgttaaacaataagtgataagttaatgaaa 363
Query: 181 aaaatatcaattactgattcacagttgcaaaatcttaacaagaacatgacaattttcaca 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaa-tatcaattactgattcacagttgcaaaatcttaacaagaacatgacaattttcaca 422
Query: 241 ttaaattgccataacgtt--atatatatatatatatatatatatatatata--------- 289
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 423 ttaaattgccataacgttcaatatatatatatatatatatatatatatatatatatatat 482
Query: 290 ------att-atgtttaaaagcctgttacatgtttcaaaactttttagttccttgtttac 342
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atatatatttatgtttaaaagcctgttacatgtttcaaaactttttagttccttgtttac 542
Query: 343 aacttgtataggaggatagccagacattttacagtgcatctcactatcactatagcatgc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aacttgtataggaggatagccagacattttacagtgcatctcactatcactatagcatgc 602
Query: 403 actatatttcatgttattctttattttcataatattaagaaattcagagaaatctctagt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 actatatttcatgttattctttattttcataatattaagaaattcagagaaatctctagt 662
Query: 463 ttgtctaacatttaagaactagtctaattaatgttatcaagtggagactttagaagtctg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttgtctaacatttaagaactagtctaattaatgttatcaagtggagactttagaagtctg 722
Query: 523 tatttgatagtctattgatgtctactgcccttgcc 557
|||||||||||||||||||||||||||||||||||
Sbjct: 723 tatttgatagtctattgatgtctactgcccttgcc 757
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 475 tatatatatatatatatatatatatatatata 444
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 477 tatatatatatatatatatatatatatatata 446
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 479 tatatatatatatatatatatatatatatata 448
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 481 tatatatatatatatatatatatatatatata 450
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 483 tatatatatatatatatatatatatatatata 452
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 485 tatatatatatatatatatatatatatatata 454
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 487 tatatatatatatatatatatatatatatata 456
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatata 289
||||||||||||||||||||||||||||||||
Sbjct: 489 tatatatatatatatatatatatatatatata 458
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 258 tatatatatatatatatatatatatatatat 288
|||||||||||||||||||||||||||||||
Sbjct: 473 tatatatatatatatatatatatatatatat 443
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 259 atatatatatatatatatatatatatatata 289
|||||||||||||||||||||||||||||||
Sbjct: 490 atatatatatatatatatatatatatatata 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 11
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
