BAC Information

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BAC

Clone NameMSMg01-054P09
Chromosome12 (Build37)
Map Location 83,802,557 - 83,802,968
singlet/doubletsinglet
Overlap geneRgs6
Upstream geneLOC100041821, Map3k9, Pcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054P09.T7 (MSMg01no054_p09.b1)MSMg01-054P09.TJ (MSMg01no054_p09.g1)
ACCAG282759AG282760
length779713
length of high quality
(start - end)
271 (101 - 371)404 (122 - 525)
definitionCHROMAT_FILE: MSMg01no054_p09.b1 PHD_FILE: MSMg01no054_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:16 2005CHROMAT_FILE: MSMg01no054_p09.g1 PHD_FILE: MSMg01no054_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCTTTTTTTTTTTTTCTTCCCCTGCGNNNCCCCCCATTATACTGT
ATCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAT
CCGCGGAATTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGGGGTTATT
CGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGGTAGGTAAAGATCCTTTTTTATAGTACACAA
TGGGATTTTTATAAGTTCCACATAAGAAGGAAGTTTGGGTTTGGGGTGTA
GCTCAGTTGGTAACCTAGAATGTACAGAGCCCTAAATTCCGTCTCCAGCA
CCTCATAAACTGGGCATCAGAGCTTTTGCCTATAATCCTGCCAACTCTGG
AGACCAAGACAAGGGCACTAAACATTCAAGGTCATTCTTCTCTACAAAAG
TTCAAGACCAGCTTGTGTTATATGAGACCCTATCTCAATGAATGAATGAA
TCAATGAATGGCTCATGTCATTGCAGGAAAATAGATGCAACTGGAGATAA
TAATAAGCAGATCAAGCTGGTCTCTGAAAGATAACTAGCAAATATTTGCT
CTCACTTGTGATTCTAAGATCACATGCAGATACATAAGATCATATATGTA
TACATGACTTGGTAAGTACAAGTGAGACGGTCTGTAAAAGCAAAGTGGGA
TAGTTGGGAAGTGGACCAAAAGGAAGGAAATATATACCTCAGCCGGTATA
GGATATTGACAATTTTTTAAAAAAAATAN
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCGCGAAATTCTCAGGGTAGGCCCACAAAGGAGTGAAGA
TAAACCAGCTTGGCTGGCCCACTCAGCTTTTCAAGAGAAGCAGAGACCAA
GTGGGTGACACAGAGAGGGCCCTGGTCCAGGGCTCTGTGCCCATAGGCCA
TAGAGTAATCTGCATCACAGTTTATGAATAATGCAGCCTAATGTGGCCCA
GGCAGTGGGATCCAGGGACCACAATCTAAACAAATTCAGGTAATGTGAAG
CCAAGTCATATAGATATGGAATCCTGCTTAGAGTTAGAAGATTCGCTCAG
CTCTCAGCCATTCTCGAAGAACTGCAAAAGATTAAATACTTAGCCCAAGG
CTTCTCGGCACTCAGAAAACTATTGGAAGGTGATGGAGATTCAGAATGCC
CAGATCGGGGACAGTGATGCTGGAGAGAGCACACGTGTCCTTCCCTAATC
ACATCTGGTAGGAAGGACACTGAGAGAAGGTGGGTTAAGTCTACATAGAA
CTGGAGCACTATCGCTTTGCCAGGATGAGAAGAGGCAAAGGAGCTGAGTG
GCTGGACTTTTCCTTGAACCGGTAAGAGCCACCTTCCCCTTGTGTTTGAG
ACCAGTGTGTGAGCATCTCCTTCCACACTGCTATGCCCTTATCTCTGCGT
GTTAGGTTCAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_p09.g1 MSMg01no054_p09.g1 CHROMAT_FILE:
MSMg01no054_p09.g1 PHD_FILE: MSMg01no054_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:16 2005
         (404 letters)



>mm_chr12_83802365_83803168
          Length = 804

 Score =  723 bits (374), Expect = 0.0
 Identities = 399/412 (96%), Gaps = 8/412 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagcttttcaagagaagcagagaccaagtgggtgacacagagagggccctggtccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctcagcttttcaagagaagcagagaccaagtgggtgacacagagagggccctggtccagg 252

                                                                       
Query: 61  gctctgtgcccataggccatagagtaatctgcatcacagtttatgaataatgcagcctaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gctccgtgcccataggccatagagtaatctgcatcacagtttatgaataatgcagcctaa 312

                                                                       
Query: 121 tgtggcccaggcagtgggatccagggaccacaatctaaacaaattcaggtaatgtgaagc 180
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 313 tgtggcccaggcagtgggatccagggaccacaatctaaagaaattcaggtaatgcgaagc 372

                                                                       
Query: 181 caagtcatatagatatggaatcctgct--------tagagttagaagattcgctcagctc 232
           |||||||||||||||||||||||||||        |||||||||||||||||||||||||
Sbjct: 373 caagtcatatagatatggaatcctgctgttcactttagagttagaagattcgctcagctc 432

                                                                       
Query: 233 tcagccattctcgaagaactgcaaaagattaaatacttagcccaaggcttctcggcactc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcagccattctcgaagaactgcaaaagattaaatacttagcccaaggcttctcggcactc 492

                                                                       
Query: 293 agaaaactattggaaggtgatggagattcagaatgcccagatcggggacagtgatgctgg 352
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agaaaactaatggaaggtgatggagattcagaatgcccagatcggggacagtgatgctgg 552

                                                               
Query: 353 agagagcacacgtgtccttccctaatcacatctggtaggaaggacactgaga 404
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 553 agagagcacacgtgtccttccctaagcacatctggtaggaaggacactgaga 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)