BAC Information

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BAC

Clone NameMSMg01-055D19
Chromosome12 (Build37)
Map Location 15,855,604 - 15,856,245
singlet/doubletsinglet
Overlap geneEG432636
Upstream geneLOC668492, LOC100042426, LOC217409, Trib2, LOC100043268
Downstream geneLOC100043273, Lpin1, Ntsr2, Greb1, E2f6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055D19.T7 (MSMg01no055_d19.b1)MSMg01-055D19.TJ (MSMg01no055_d19.g1)
ACCAG282960AG282961
length6981,446
length of high quality
(start - end)
644 (44 - 687)---
definitionCHROMAT_FILE: MSMg01no055_d19.b1 PHD_FILE: MSMg01no055_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:36 2005CHROMAT_FILE: MSMg01no055_d19.g1 PHD_FILE: MSMg01no055_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCTTATCCCAAGCTAAAGAGACTGGTGGAATAATTTGTTCTTTAAT
GACATATAGTATTTTTTCATTTTGAGATTCATTCCTCCCTCCCCCAGTGC
AGAAACTTATGGGCTGTTCAGGGATGGAGGGTGTTGAGTCTATTCACTTT
TCAGAAAAGTGAGATTTTTCACTTTTTTTTTTCCCTTCTATGTCCTTTCT
AAGCATGTTTCCCTTACCAGTTGGAGTTCCCTGATCCATCAACAGTTTGG
CTTCCTTGCTCTTCCCTCTGTCCTGTGGCTATGTCTGCCGTCTGCTGACC
TCTGTGTCATCCTACCAGCATGGCTACTTACCTCCTCTCCTCTATTATCC
TCCTCTGGCCAGCAGCTGAAGCTTACATCTTGTATCTCCTAGGGCTTTTA
GACTATAATAAAATTGTTCTTGAATTTGAGTCCATTCTAACATTCTTTTA
CTAATTTATTAATAATAAAGTATTTATTTAAACAATTTAAATTCAATGAT
ATAATAAAATAATATTTTAATAATTTAATGTTTTATTAACAATAAATAAG
TTAATAATAAAAATGATAAAATAAGATGTCTTAAATAAAATAATTTATTA
ATAAACAATATTTATTTATTTATTTATAAGACTGAGAACTTAGGGAAA
TGACAATATTCCGTGTAATACACGTAACGGGGACATATCGACACCTTCAG
ACAACCACCGACACACAGAATAGATACAACATATCTTATCACTTTTACGC
AGTAACCGCGCCACGGCAATAGAATGCACCTAAATAGGACAATAGATACA
CCGGCGCAGACGTAGGCGCGCAACTTAATTCTATTATTTCGCGACCGCTG
CGTCGATTACCGCGCCCGCCGTATTGTACGGCCGACGTACGAGTAAAGAA
GACGGAACAGCACGCTATATTACCGATTACGGTACCGCGTATTTCGCCGA
ATGTAGATTCGCGATATAATAAANACGTACGGAGACGGATATGGTCAGGG
CGGGCGAGATCACTTACTTGAGAATGCCACTACTCGGACAACCCGTAACG
TACTCTATTCGTATTCGTGTTGTCATAGTCGTAGATCGCGCCGCGACGAC
TCACATCCACTATAATTCTGCGAGTAGTATACATAACATTCATGCGAATG
ATATAGACAATCACCTCNCCCGATAATACGCAATAACAATATCGTATCAA
ACCCGCGCCCGGACGGAAATAACCGCCCAGCATATATACACCACATCCGC
AAGCTATTCGTTGCTTGCGTCGGCGCCCAAGATAATCGAATATATTATTG
GCGCTTACCGTACAACATAAGTATTCAAAATTTTTACCGCCGCCGAACGC
AAATTAACCCCTCCACACAAATATATAGAGAATTACTATTCTCATTATAC
ATCGAACACTAGTGCGTGCCGCGAATATGGGATCGAGTTACGATCGAATA
TCCGTATTTTATATATTGTAGTCGTACGAGTCACATATATATTTTACCGT
ACAAAATGCTTACCTTCCGCGTATTCTAAGTAACTCCCGCGCGACGTCGT
ATGCCATATGTAACCGATACAGCACGACGCACGCTATAGACGCAGTTCAT
ATTTATCTGTGTACAAGACCACATACGATACTTTAGCAGTAACATATACG
CAGAGAACTGGACTGACGCGACGCGAACTACGGTGNGCGACAAAATTTCG
TCAAATCAACTCGGTAACAAACGACATATTGGTAATATCTTTAGTTTATA
TTGTGCGCCACCGCTTATTTCGTATAATGACGCCATATGCGTATCCGAGN
CGCGGCGTATAGGCGGAGAAACAAATTTACGCGCGCTAAGATTGAGGTGT
ACCACTATACGGGTTACGCTACTATGTTCGCCTGTCACCTGCTATAGTAT
TAATAACCGACTAATACATATCTGATTATCATCGCCGCNGTAGCTGTACA
TCGATCGAGAATTGTAGCCGAATGAGAGNTAATACGCGCCGCGCGATCTG
TGACGGATCATATATACGCAACATNCGGCCGCGCGCCGTCTATATATTGT
CTTCGCACCACGCGTACCACATTATATTACACCTGATGGCTCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_d19.b1 MSMg01no055_d19.b1 CHROMAT_FILE:
MSMg01no055_d19.b1 PHD_FILE: MSMg01no055_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:36 2005
         (644 letters)



>mm_chr12_15855400_15856445
          Length = 1046

 Score = 1149 bits (594), Expect = 0.0
 Identities = 630/642 (98%), Gaps = 2/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccttatcccaagctaaagagactggtggaataatttgttctttaatgacatat 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccttaagccaagctaaagagactggtggaataatttgttctttaatgacatat 264

                                                                       
Query: 65  agtattttttcattttgagattcattcctccctcccccagtgcagaaacttatgggctgt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtattttttcattctgagattcattcctccctcccccagtgcagaaacttatgggctgt 324

                                                                       
Query: 125 tcagggatggagggtgttgagtctattcacttttcagaaaagtgagatttttcactttt- 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 325 tcagggatggagggtgttgagtctattcacttttcagaaaagtgagacttttcacttttc 384

                                                                       
Query: 184 tttttt-cccttctatgtcctttctaagcatgtttcccttaccagttggagttccctgat 242
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 ttttttgcccttctatgtcctttctaagcatgcttcccttaccagttggagttccctgat 444

                                                                       
Query: 243 ccatcaacagtttggcttccttgctcttccctctgtcctgtggctatgtctgccgtctgc 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ccatcaacagtttggcttccttgctcttccctctgtcctgtggctatgcctgccgtctgc 504

                                                                       
Query: 303 tgacctctgtgtcatcctaccagcatggctacttacctcctctcctctattatcctcctc 362
           |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgacctctatgtcagcctaccaggatggctacttacctcctctcctctattatcctcctc 564

                                                                       
Query: 363 tggccagcagctgaagcttacatcttgtatctcctagggcttttagactataataaaatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggccagcagctgaagcttacatcttgtatctcctagggcttttagactataataaaatt 624

                                                                       
Query: 423 gttcttgaatttgagtccattctaacattcttttactaatttattaataataaagtattt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttcttgaatttgagtccattctaacattcttttactaatttattaataataaagtattt 684

                                                                       
Query: 483 atttaaacaatttaaattcaatgatataataaaataatattttaataatttaatgtttta 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atttaaacaatttaaattcaatgatataataaaataatattttaataatttaatgtttta 744

                                                                       
Query: 543 ttaacaataaataagttaataataaaaatgataaaataagatgtcttaaataaaataatt 602
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaacaataaataatttaataataaaaatgataaaataagatgtcttaaataaaataatt 804

                                                     
Query: 603 tattaataaacaatatttatttatttatttataagactgaga 644
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tattaataaacaatatttatttatttatttataagactgaga 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1046
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1036
Effective search space:   656824
Effective search space used:   656824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)