Query= MSMg01no057_k12.b1 MSMg01no057_k12.b1 CHROMAT_FILE:
MSMg01no057_k12.b1 PHD_FILE: MSMg01no057_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:40 2005
(547 letters)
>mm_chr12_62752470_62753416
Length = 947
Score = 957 bits (495), Expect = 0.0
Identities = 531/543 (97%)
Strand = Plus / Plus
Query: 5 gaattccaatgataccgctcctattactcttcactcattttgtgatgtggctttgaatga 64
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatgatacagcttctattactcttcactcattttgtgatgtggctttgaatga 264
Query: 65 tgcaactcccctcaagccacccatatccatgtaaattacttcactaaactcatatggtat 124
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 265 tgcaactcccctcaagccacccagatccttgtaaattacttcactaaactcatatggtat 324
Query: 125 cagataaaaacaaatactaattgcattttcaaatccaaatctgacttctgatattaacat 184
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagctaaaaacaaatattaattgcattttcaaatccaaatctgacttctgatattaacat 384
Query: 185 tactttcatcctttagtcaaaaaattcagtcaaaccataatatgatatattacctgtcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactttcatcctttagtcaaaaaattcagtcaaaccataatatgatatattacctgtcat 444
Query: 245 cagtttatacaatattgttctatgaaatacagagaatatcttagtgagaaattttttcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 cagtttatacaatattgttctatgaaatacagagaatatcttagtgagaccttttttcaa 504
Query: 305 tttcagcatttcttatctttgttaaatagtgcttaagcatactttgattctgaaattaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttcagcatttcttatctttgttaaatagtgcttaagcatactttgattctgaaattaat 564
Query: 365 acacaggacatgggatttattaagttgaaggtagtctttgtaatttatgcactacagttt 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acacaggatatgggatttattaagttgaaggtagtctttgtaatttatgcactacagttt 624
Query: 425 tagttctagagaatagaccaaaattgcaactcccctagctgggcatggtgacacacttct 484
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 625 tagttctagagaatagaccaaaattacaactcccctagctgggcatggtggcacacttct 684
Query: 485 ttaatcccagcactcaggaggcagaggcaggtggatttcccgagttcgaggccagcctgt 544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 ttaatcccagcactcaggaggcagaggcaggtggatttcccaagttcgaggccagcctgt 744
Query: 545 tct 547
|||
Sbjct: 745 tct 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_k12.g1 MSMg01no057_k12.g1 CHROMAT_FILE:
MSMg01no057_k12.g1 PHD_FILE: MSMg01no057_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:40 2005
(544 letters)
>mm_chr12_62824401_62825344
Length = 944
Score = 677 bits (350), Expect = 0.0
Identities = 353/354 (99%), Gaps = 1/354 (0%)
Strand = Plus / Minus
Query: 192 aatg-aaaaatctcaataaccaattagaaaatgttcaggaaaaagacttatcagtagaac 250
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 aatgaaaaaatctcaataaccaattagaaaatgttcaggaaaaagacttatcagtagaac 885
Query: 251 tgatcaaacataaaaaggtagataattaatgcataaaataaaatgaaggcattagattaa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tgatcaaacataaaaaggtagataattaatgcataaaataaaatgaaggcattagattaa 825
Query: 311 tcaaaaatatgaagaaaagtcatcaaatgaatttgcaggttggtatttttattttttatt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tcaaaaatatgaagaaaagtcatcaaatgaatttgcaggttggtatttttattttttatt 765
Query: 371 aaatgtaagttaaaatttttctaacacttgctggtttacactcagctttattcccatcag 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aaatgtaagttaaaatttttctaacacttgctggtttacactcagctttattcccatcag 705
Query: 431 tggaatctgactttgcttcattaacagtcaggattacatgaagaaattgggctctaattc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tggaatctgactttgcttcattaacagtcaggattacatgaagaaattgggctctaattc 645
Query: 491 tcaagaaaattttcttatgacaacataagccttttgctttcttagtgatgtcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcaagaaaattttcttatgacaacataagccttttgctttcttagtgatgtcca 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
