BAC Information

Click to search

BAC

Clone NameMSMg01-059A03
Chromosome12 (Build37)
Map Location 31,337,683 - 31,338,285
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18
Downstream geneLOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059A03.T7 (MSMg01no059_a03.b1)MSMg01-059A03.TJ (MSMg01no059_a03.g1)
ACCAG285788AG285789
length725985
length of high quality
(start - end)
606 (45 - 650)---
definitionCHROMAT_FILE: MSMg01no059_a03.b1 PHD_FILE: MSMg01no059_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:24 2005CHROMAT_FILE: MSMg01no059_a03.g1 PHD_FILE: MSMg01no059_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTATACCACATACAAATATCTTTCTGGTCTTATTTCCCCTAC
TGACATTCCTAAACCTTGTTTTAATTGCTACTCTCTCTTTTAAGTAAACT
CTCACTATTAAGGGAAAAAGACTTTTGTCTTGCATATAAAATGATGTTTA
CTCTGAGAAAAATCAACCTATTATTGAGGCTCTTTCTTCCTGGTGTGAGT
GATGTTTGATTGTGCTACAGCTTCCTAATTATGAAATGGACTCTGCTTTG
GCTGAAAAGCATTGACTCCTCACTCGGCCCAACAAGGTAACTAAGGGCAG
GATAAAAGCCTCGGCTTTCTGCCTTTGTGTGTCTCTGAGACTTCGAATCA
GACACCTCTGCAACACTACAGGTAGGCACGTTCATTGTTCCAGGACTGTC
TGTCTACAGTCAGACAGCGATTCTCTAACATTCAGGTGCCATGGGTTCCA
GGTACAGCAAAGTCTCTCACATCACTCCACAAGTGACATTAATCCAAACA
GCCTAAGTCACCTCTTAGGAACCAGATTGTCCCCAAGGACATAAACATTT
CTCAGAAGACAGACATGGTGTGAAACCAGAGTTTGGTTGCTGGCTTATAT
AGACTTCGGGGTACCCCAGTGCTTCCTTTCTGTTCTCAGATGCTGTCGTT
TATAACCAGACGCGATGCGGCTGAA
CCCTACTCTTATCCCACCTCTTTCCTCCCACCCCTTCCTTTCTTCCCCAC
CTCCCCTCACCTCCCCCCCCCCCCTCCCTTCCTCCCTCCTCTTTTCCCCC
CTTCTCTTCCTTTCTCTTATTTCTCTTTTTTCCCTCCTACCCTATACCAC
CCCACCCTGTCCCCCTTCTTTCCTCCTCGCCTCCCCCCTCTCTCCTTCCT
TTTCCCTTCCCTCCTTCCCCTTTCTACTCTCCCCTCTCCTCCCCTTTTTT
CTTCTTTTTCTTCCCTCTCTCACCCTCTTTCTCCCTCTCCTTTCCCTCCT
TTTCTACCACTTCTTCTTTTCTTTTCCTTTTTTTTCTTACCTTTCTCCTC
CCACCCCTCTCTTCTTTTTCTTCCAATCTTATATTCTTCCTTTGACTTTT
CTCCTCTCTTCTTCCCTTTCCTTTTATTTTCTTCCTATTTATTCTCCTAA
TCCCTTTTCTGTTCCCCCGGCAACCCCCACCTTCTTATTTTTNNNNNNNN
TNCNNNNNNNNTCTTTCNTTTCCCCTCTTTTTTTTCTTCTTTTAAACTTT
CCCTTTTCTTTTACNAATCTNCNCNTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTCAGATGGGCGTCNNNNNNTATGCTGTCTTTCTTGTGTTCCCT
CTTCCCGAATCCCCTTATNNCCNNNNACCTTCGTGGTGTTTTTGNATAAT
CCGGTTTCTTTTTTATTCCCCANACGCAAATTTCTGTTCCTTATAAANAA
AATGGGCCTAAGTGNNCTAAGAGTNGNNGATNAGNAGAACATGCGAGAAC
GGGGAATCGGANACAGTTAGAAAANGGCCGTTGGGCCGNNNAATTGGNGN
NGGGGTGGNCCNNCCTTTAATAGAGAAAANCNGGGNAAGGGGNGTGCCCN
NGGNNNNNNAATNNCNGAGCCCGTTCGAAAANGCGNTNCGGAAAGNANAN
ACGTCNCNCNACNNNTAANNNNNTNCNAGCNTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_a03.b1 MSMg01no059_a03.b1 CHROMAT_FILE:
MSMg01no059_a03.b1 PHD_FILE: MSMg01no059_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:24 2005
         (606 letters)



>mm_chr12_31337479_31338485
          Length = 1007

 Score = 1011 bits (523), Expect = 0.0
 Identities = 584/605 (96%), Gaps = 5/605 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttatac-cacatacaaatatctttctggtcttatttcccctactgacatt 63
           ||||||||||||| ||  ||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 807 gaattctttgttagacatacatacaaatatcgttctggtcttattttccctactgacatt 748

                                                                       
Query: 64  cctaaaccttgttttaattgctactctctcttttaagtaaactctcactattaaggg--a 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 747 cctaaaccttgttttaattgctactctctcttttaagtaaactctcactattaagggaaa 688

                                                                       
Query: 122 aaaagacttttgtcttgcatataaaatgatgtttactctgagaaaaatcaacctattatt 181
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaaaaacttttgtcttgcatataaaatgatgtttactctgagaaaaatcaacctattatt 628

                                                                       
Query: 182 gaggctctttcttcctggtgtgagtgatgtttgattgtgctacagcttcctaattatgaa 241
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 627 gaggctctttcttcctggtgtgagtgatgtttgatagtcctacagcttcctaattatgaa 568

                                                                       
Query: 242 atggactctgctttggctgaaaagcattgactcctcactcggcccaacaaggtaactaag 301
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 567 atggactctgctttggctgaaaagca-tggctcctcactcggcccaacaaggtaattaag 509

                                                                       
Query: 302 ggcaggataaaagcctcggctttctgcctttgtgtgtctctgagacttcgaatcagacac 361
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggcaggataaaagcctgggccttctgcctttgtgtgtctctgagacttcgaatcagacac 449

                                                                       
Query: 362 ctctgcaacactacaggtaggcacgttcattgttccaggactgtctgtctacagtcagac 421
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 448 ctctgcaacactacaggtaggcacgtccattgttccaggactgtctgtctacagtcagac 389

                                                                       
Query: 422 agcgattctctaacattcaggtgccatgggttccaggtacagcaaagtctctcacatcac 481
           ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 388 agcgattctcttacattcaggtgccatgggttccaggtacagcaaagcctctcagatcac 329

                                                                       
Query: 482 tccacaagtgacattaatccaaacagcctaagtcacctcttaggaaccagattgtcccca 541
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tccacc-gtgacattaatccaaacagcctaagtcacctcttaggaaccagattgtcccca 270

                                                                       
Query: 542 aggacataaacatttctcagaagacagacatggtgtgaaaccagagtttggttgctggct 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aggacataaacatttctcagaagacagacatggtgtgaaaccagagtttggttgctggct 210

                
Query: 602 tatat 606
           |||||
Sbjct: 209 tatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space:   594212
Effective search space used:   594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)