NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCATAATTTATACTCCTCATTTTCAACTGCTATAGTCTTCATCAG
GCTACTGAATATTTAGTCATTTCTAACTTTGAATACTGTACTTTTCTATT
GTGTTATAGTCTATCGTTTTAGTTTCTCTAATTATAAATGTCTGCTTTTC
TATTCATCTCAACCATGTTTGGCTCTAGTCAGTCTACGGATCATGGTTTT
AATGGTTGCTTTAAAGTCTGATAAATTCTTAAATTTGGGTTATCTTAGCA
TCTTATTGCACTCTGGACAGTTTAGATGTTATGCTGCAGTGATTCTGAGT
CCTTTAAAATGTTCTAGAAAATGTTTTAGTGTTAGTAGATAATTACTCCA
TTTAAGTCTATTCAGACTCAAAGCCTCATTCTCCCCCCTCCCCAAGTTTC
AATATTAATTCCTTTTTAAAGGCATTGTTCAAGGACTTGGGAGATGTCTC
AGTGAGCAAGAGCAGGATCCGAGTTTGAATTTAAAAACAAAAAAATAAAA
CAGAAAACTGGCTATAACTGAGCAAGCTGTAACTCCAACCTTGTTGAGTA
GAGACAGATGTATTCTGGGAACTTGCCTGTTCTCTAACCATCCTAATCAC
TAGCTTATAGGGTAAGCTGCTGGTTCAGCAAGAGAGGTTGTTTCAAGAGA
TTGGCTCGTTCCTTTGTTT

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGGAAGGCAGGAGAAGCAGC
AAAGCACGACATTAACAACCCCCCACTCCCCCCACTCCCACCCCACACCC
CCACACCCCCACACCCCCACACTCCCACACCCTCAACCCACACCCCCCCC
GTGATCTGGAGCCTGGCTCTCTTGGGAACAGCCCATGAATCAAAGAAGTT
AAAATAAATATCAGAAGCCATGGTAGTGTACATTTTTAATACAAACATTC
GGGAGGCAGAGGCAGGAAGATGTCTGTGATTTCTTAGCCAGTCTGGTCTA
CAGAGTGAGTTTTGGGCCAGCCAGGACTACATAGTAAGGACTACAAAGTA
AAGGTGTAATATGAAACAGACTGTCCGACAGGCATCACCAGAAGCCAGCT
GGTTCAATGTTCTGAACTGATAAAAACGACAAAGATTTTAAATGTTTTAG
TATTTTATTTTTACATGCATGTCTGCATGTGCATACATATGTTTATAAGT
GCACCACATATATGCGGTGTCCATGAATGCCAGAAACAGTTACGATATCC
CCTTGCAAATGCCGTTATAGGCGCTCGTTGCTTATCTTGACGTCGTTTCT
TTACCAACGCTGCGCTTCTTTTCTTTTACATCCTCACTTGTTTTTACACT
TTCCTATCTGTCTTCACTTTCT

Query= MSMg01no059_c08.b1 MSMg01no059_c08.b1 CHROMAT_FILE:
MSMg01no059_c08.b1 PHD_FILE: MSMg01no059_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:35 2005
         (628 letters)



>mm_chr12_119487876_119488902
          Length = 1027

 Score = 1096 bits (567), Expect = 0.0
 Identities = 609/623 (97%), Gaps = 1/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcataatttatactcctcattttcaactgctatagtcttcatcaggctactgaata 65
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 206 gaattcataatttatactgctcattttcaattgctatagtcttcatcaggctactgaata 265

                                                                       
Query: 66  tttagtcatttctaactttgaatactgtacttttctattgtgttatagtctatcgtttta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttagtcatttctaactttgaatactgtacttttctattgtgttatagtctatcgtttta 325

                                                                       
Query: 126 gtttctctaattataaatgtctgcttttctattcatctcaaccatgtttggctctagtca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtttctctaattataaatgtctgcttttctattcatctcaaccatgtttggctctagtca 385

                                                                       
Query: 186 gtctacggatcatggttttaatggttgctttaaagtctgataaattcttaaatttgggtt 245
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 gtctacggatcatggttttaatggctgctttaaagtctgataaattcttaaatttgggtt 445

                                                                       
Query: 246 atcttagcatcttattgcactctggacagtttagatgttatgctgcagtgattctgagtc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcttagcatcttattgcactctggacagtttagatgttatgctgcagtgattctgagtc 505

                                                                       
Query: 306 ctttaaaatgttctagaaaatgttttagtgttagtagataattactccatttaagtctat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 506 ctttaaaatgttctagaaaatgttttagtgttagtagataattactccatttaagtccat 565

                                                                       
Query: 366 tcagactcaaagcctcattctcccccctccccaagtttcaatattaattcctttttaaag 425
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 566 tcagactcaaagcctcattcttccccctccccaagtttcaatattaattccttttaaaag 625

                                                                       
Query: 426 gcattgttcaaggacttgggagatgtctcagtgagcaagagcaggatccgagtttgaatt 485
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 626 gcattgttcaaggacttgggagatgtctcagtgagcaagagcaggatctgagtttgaatt 685

                                                                       
Query: 486 taaaaacaaaaaaataaaacagaaaactggctataactgagcaagctgtaactccaacct 545
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 686 taaaaacaaaaaa-taaaacagaaaactggctataactgtgcaagctgtaactccaacct 744

                                                                       
Query: 546 tgttgagtagagacagatgtattctgggaacttgcctgttctctaaccatcctaatcact 605
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 745 tgttgagtagagacagatgtatcctgggaacttgcctgttctctaaccatcctaatcatt 804

                                  
Query: 606 agcttatagggtaagctgctggt 628
           ||| || | ||||||||||||||
Sbjct: 805 agcctaaatggtaagctgctggt 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space:   628506
Effective search space used:   628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)