BAC Information

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BAC

Clone NameMSMg01-059E06
Chromosome12 (Build37)
Map Location 85,663,828 - 85,664,389
singlet/doubletsinglet
Overlap geneZfp410
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1
Downstream gene9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059E06.T7 (MSMg01no059_e06.b1)MSMg01-059E06.TJ (MSMg01no059_e06.g1)
ACCAG285985AG285986
length713707
length of high quality
(start - end)
570 (51 - 620)560 (77 - 636)
definitionCHROMAT_FILE: MSMg01no059_e06.b1 PHD_FILE: MSMg01no059_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:43 2005CHROMAT_FILE: MSMg01no059_e06.g1 PHD_FILE: MSMg01no059_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGATCC
GCGGAATTCTTTCTTTCTTCGTTTTCTTTTTTCTTTTCTTTTCTTTTCTT
TTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTTCTTTTCTTTTCTTTTCTT
TTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCGAGACAGGGATTTTCTGT
GTGCTCTTAGCTGTCATGGAACTTGCTCTAGAGACCAAGCTGGCCTCAAA
TTCCAGAGATCCACCTACCTCTGCTTCCGGAGTGCAGGGAGTAAAGGCAT
GTGCCACCACTGCCAGCTAGAATTTCTTATAGTGATCCAATTATATGTAG
TTTACAAAAGACATAAATAGGTTAACAGTAAAGAATGAAATGAGACACTA
GTAATCAGAGAGGCAGAGACAGCCACATCTCTATGACTTCAAGGCCAGCC
TGGTCTACATAGTGAGTTTCAGGCTATCCAAGGCTGCATAGTGAGACTCT
AACTCAATCTCACTCCCCAACCCTCCAAGAAAAAAGACACTAATAAGAGG
TGCTGGAAAGATGGCTCAGTCTGTAAAGCTTTTGCCATAAGCATGAGGCC
CCGAGTTTAGATCTCCGGCATCCATAGAAGAAGCCAACCACAGCAGCATA
CACATCTGCTATCCCCAGGGTTAGGGAAATGTCGACAGGAGATTCCCTAG
GGCTGGCTGGCCT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCATCCCTGCGGCCTGGCTCC
CCAGCCTCCCTGCCAGTGTCAAGGATGTCCTCCTTTCAGTCACTGTCCTT
AGCCTCTTGAGGGCCTCTGACACCGATTTCCCTTGGGTCCCCATGACTCC
TCACTATGCTGATAGTCATCTACTTCAGCGTCTTCCCTCCTCCTCGGGCT
CCCTTGCCTGAGACATTCCTTCAAATGGCGTGTCACAGTGCTACAATGGC
TTTTCTGCCCCACTTTCACATACGTGTTCCTATGCTTAAACTACTTAGGT
CCTTGTGACTTCTCTGGCTGCCTTTTGATATGCTGACTCCATATCAACCG
GCTGTAACATCAGTTGCACTCTGCTCTCGGCACAGAGCAGTCTAACCTCT
TTCGTTAGGTCTTCTTTGTCCTATCTGTAGTGAACGCATTTTACCTGGTA
ACATTAGTCGGCTGCATTCTGAGGCCTCGGTCACTGGAAGGAGGGATAAG
CAAGTAATGTCTTTAGCTTCTGATTCTACTAGCCCTTGTCCCAGGGGGAT
GGAGGTATTCTGAACAAACTGAACCAGGAGCTGAGGAGGGGAAAACAGGC
AAAACTGAGAATCAGATGTTGCTAGGATTGAATCTCACCTTTAAATTTAT
CAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_e06.g1 MSMg01no059_e06.g1 CHROMAT_FILE:
MSMg01no059_e06.g1 PHD_FILE: MSMg01no059_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:44 2005
         (560 letters)



>mm_chr12_85663628_85664589
          Length = 962

 Score = 1067 bits (552), Expect = 0.0
 Identities = 559/562 (99%), Gaps = 2/562 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctccatccctgcggcctggctccccagcctccctgccagtgtcaaggatgtcctccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cctccatccctgcggcctggctccccagcctccctgccagtgtcaaggatgtcctccttt 703

                                                                       
Query: 61  cagtcactgtccttagcctcttgagggcctctgacacc--gatttcccttgggtccccat 118
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 702 cagtcactgtccttagcctcttgagggcctctgacaccctgatttcccttgggtccccat 643

                                                                       
Query: 119 gactcctcactatgctgatagtcatctacttcagcgtcttccctcctcctcgggctccct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gactcctcactatgctgatagtcatctacttcagcgtcttccctcctcctcgggctccct 583

                                                                       
Query: 179 tgcctgagacattccttcaaatggcgtgtcacagtgctacaatggcttttctgccccact 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgcctgagacattccttcaaatggcgtgtcacagtgctacaatggcttttctgccccact 523

                                                                       
Query: 239 ttcacatacgtgttcctatgcttaaactacttaggtccttgtgacttctctggctgcctt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttcacatacgtgttcctatgcttaaactacttaggtccttgtgacttctctggctgcctt 463

                                                                       
Query: 299 ttgatatgctgactccatatcaaccggctgtaacatcagttgcactctgctctcggcaca 358
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 462 ttgatatgctgactccatatcaaccagctgtaacatcagttgcactctgctctcggcaca 403

                                                                       
Query: 359 gagcagtctaacctctttcgttaggtcttctttgtcctatctgtagtgaacgcattttac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gagcagtctaacctctttcgttaggtcttctttgtcctatctgtagtgaacgcattttac 343

                                                                       
Query: 419 ctggtaacattagtcggctgcattctgaggcctcggtcactggaaggagggataagcaag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctggtaacattagtcggctgcattctgaggcctcggtcactggaaggagggataagcaag 283

                                                                       
Query: 479 taatgtctttagcttctgattctactagcccttgtcccagggggatggaggtattctgaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taatgtctttagcttctgattctactagcccttgtcccagggggatggaggtattctgaa 223

                                 
Query: 539 caaactgaaccaggagctgagg 560
           ||||||||||||||||||||||
Sbjct: 222 caaactgaaccaggagctgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 962
Length adjustment: 10
Effective length of query: 550
Effective length of database: 952
Effective search space:   523600
Effective search space used:   523600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)