BAC Information

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BAC

Clone NameMSMg01-059H07
Chromosome12 (Build37)
Map Location 113,082,513 - 113,082,798
singlet/doubletsinglet
Overlap genePpp1r13b
Upstream gene2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21
Downstream geneLOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H07.T7 (MSMg01no059_h07.b1)MSMg01-059H07.TJ (MSMg01no059_h07.g1)
ACCAG286129AG286130
length700711
length of high quality
(start - end)
290 (77 - 366)34 (154 - 187)
definitionCHROMAT_FILE: MSMg01no059_h07.b1 PHD_FILE: MSMg01no059_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:58 2005CHROMAT_FILE: MSMg01no059_h07.g1 PHD_FILE: MSMg01no059_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGAGGGGC
GGAATTCAATTTCCTTTCTTTTTTAAATATAAACTTAATTATGGTTTTTT
TATAGGGCACAGTAATAATTTGATGAATGTATATTACGTGTATTGCTTAA
TCAGGAAGTTCATAATTCTTTCTCCTTAAACTTAAAATTTTGATAAATTA
TGGTGATTTTTGCATATGTATGGCATTTGGTTTGTCTGTGAATAGCTCTG
GACCTTTCTGTTATGGGTGATGGATTTTGTGAGGTTGCTCCAGGGGCTAT
AATGAGTAGTCTGGTTTTGTTATTTTATTTAAATTTCATCCATGCATTAA
GATGACCATACTGTCAGGTATGTAGGCACATGCCTGTAATCCCAGCCCTT
GAGAGACTATGCAGTATTCTCATCTCAGCAGCCAGTCACTTAGGTCACAC
AGGTGCTTCTCTTGCTTGTCTGTGAACTCTGGTCTGTTTGTGTTTGTCTG
TTTGACGTTACAGCAAAGGTCAAAACCTTCACAATAAAGCTTTTATCTTG
CTCTCTGGGATCTGAAGTGCTTTGACCAATCTAGCTTTCAAATGAATGCT
CCTAAGGACTATTTCCCATTTACTGTAAGCATAGACACTGACTTGCCGAG
GAGTCATATCATGTATGTCAAAAACTGTTGGTGTCTTTGCACTCACCCAN

NACGATGTAGTGAGAGGCCTGGCGGACGCCTGGCTTCCTACTAAGCGTGA
CCTATATAAGTATTTCAGTAATTCGAGGAAAACGGAAATAGGGGAACACG
GTAGGGATTTGAACGACAGACAGAAGGTCCTCATGATCCAGCCTGGGTGG
ATGTCTAGGCCTATGAATTCTGTCTTAAACCATGAGAGCGAGTTGCGTAC
TCTGTCATTCTAGTCAACCCACCAGGTTAGCAACACTATTTCCTTATATC
CCCCCTTCTCCCCATCCTAATCAACTCCCTGGAACCAGTTTGGAAGTTAA
CTGCAGCTCTTCCCCACTCCCTTTTTTTTTCTTCGTCCCTATAGTTATTT
AACTTTCTATTTTTCTGCCCCACCCCCTACAAAACTTCCAAATCTTCATA
TTTGAATTTTTTTCTCCCCGCCCCATCCTGCCGATCGTTATTTTTTCGCA
CATTCGTCTCCCGGTACGTCTCCTCACCTCATCCTCACCTCTCTCTTCAC
CCTTCTGCCGTTTTATTTCTTTTCCCTGCCGTTTACTACTATATCTCTTC
ACTCCGTTCGTTGTTCCTGCCCCGTATATTCTTTCTCCCTTCTCCTTCGT
TTTCCCCTCTTCCTTCATTCCCCTCCCCTTATCCTTATTTTTTATTCCCT
ACGATCCATACCTTTTCCTTTATTTTTTATTTCAACCACATTTAACCTCA
TCTATCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h07.b1 MSMg01no059_h07.b1 CHROMAT_FILE:
MSMg01no059_h07.b1 PHD_FILE: MSMg01no059_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:58 2005
         (290 letters)



>mm_chr12_113082313_113083001
          Length = 689

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataaacttaattatggtttttttatagggcacagtaataatttgatgaatgtatatta 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atataaacttaattatgg-ttttttatagggcacagtaataatttgatgaatgtatatta 428

                                                                       
Query: 61  cgtgtattgcttaatcaggaagttcataattctttctccttaaacttaaaattttgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cgtgtattgcttaatcaggaagttcataattctttctccttaaacttaaaattttgataa 368

                                                                       
Query: 121 attatggtgatttttgcatatgtatggcatttggtttgtctgtgaatagctctggacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 attatggtgatttttgcatatgtatggcatttggtttgtctgtgaatagctctggacctt 308

                                                                       
Query: 181 tctgttatgggtgatggattttgtgaggttgctccaggggctataatgagtagtctggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tctgttatgggtgatggattttgtgaggttgctccaggggctataatgagtagtctggtt 248

                                                          
Query: 241 ttgttattttatttaaatttcatccatgcattaagatgaccatactg 287
           ||||||   ||  ||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgttaaactacgtaaatttcatccatgcattaagatgaccatactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)