BAC Information

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BAC

Clone NameMSMg01-061E06
Chromosome12 (Build37)
Map Location 101,788,830 - 101,789,353
singlet/doubletsinglet
Overlap geneRps6ka5
Upstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
Downstream geneLOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061E06.T7 (MSMg01no061_e06.b1)MSMg01-061E06.TJ (MSMg01no061_e06.g1)
ACCAG287515AG287516
length735739
length of high quality
(start - end)
620 (35 - 654)569 (65 - 633)
definitionCHROMAT_FILE: MSMg01no061_e06.b1 PHD_FILE: MSMg01no061_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:11 2005CHROMAT_FILE: MSMg01no061_e06.g1 PHD_FILE: MSMg01no061_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
TAGCCCTGTACCCCATTTTTAATATGGTTATTTGAATTTCTGGAGTCTAA
CTTCTTGAGTTCTTTATATATATTGGATATTATTCCCCTATTGGATTTAG
GATTGGTAAAGATCTTTTCCCAATCTGTTAGTTGCCGTTTTGTCTTGTTG
ACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTT
GTTGATTCTTGGTCATACAGCACAAGCCATTGGTGTTCTGTTCAGGAATT
TTTCCCCTGTGCCCATATCTTCAAGGCTCTTCCCCACTTTCTCCTCTATA
AGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACTT
GAGCTTTGTACAAGGAGATAAGAATGGATCAATTCGCATTCTTCTACATG
ATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGTTGTCTTTTTTC
TACAGGATGGTTTTAGCTCCTTTGCCAAAGATCAAGTGACTGTAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGTCTGT
CACTGTACCAGTATCATGCAGTTTTTATCACAATTACTCTGTAATACAGC
TTAAGGTTGGGGAAGGTGATTCCACCAGAGGTTCTTTTATTGTTGATAAT
AGTTTTTTCTATCCTACATTTTTTTGTTATTCCAG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTTACTTTCCCTTGGATGGGTGCATAAGTGGCGA
ACGAGTCATCAGAAGAGAGATGTGAGGACAAATTAAAGTCAATAAGAAGA
AGAATGGTAAAATACAGTACCTATGACACAGTGCACCTTCTAAGACAGAC
TGCAATACTCATACTATTTTATAAAGTGCCATATTACATAAAACCAAGAG
ACATGTACCTTAATTCCTGCAATAACCATTAAAACAAACAGGCAGGAAAG
AGCAGTGTAAAATTAAAAACACACATAGCTCAGCATGCATCGCGGATGGG
TCCCAGGAGCAAAGCATGGGGCCTTAAGCTCTTAAATACTTATTTCACTT
TCTAGAAAACAATGAATAATAGCAGATTATCAGCATATGTGACCATACAA
TAAAAACAATAAGTTAAATTCTCTTTTAAGAAACAAGCCACACATAAAAT
TCATTATAGCATCTTTTTTGAAAACAGACCTTTCTCTCTGGTAAATCACT
ACCCAAAAGGTGCAAAGTCTCTTAAAAAATTTCCTTGTCCACCAGGCATG
GCAGAAGTCTTCAAGTCTTCTTGGCAGACATCTTGGTGAAAACACCTGGG
TGAAAATCTGTGACTTAGCTAACCAGTCACTAAAGTTACAGAAACCTTTG
CTGTTTCAAGAAGAATCTTGAGCTGGCATCATGTTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_e06.g1 MSMg01no061_e06.g1 CHROMAT_FILE:
MSMg01no061_e06.g1 PHD_FILE: MSMg01no061_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:11 2005
         (569 letters)



>mm_chr12_101788585_101789553
          Length = 969

 Score = 1013 bits (524), Expect = 0.0
 Identities = 524/524 (100%)
 Strand = Plus / Plus

                                                                       
Query: 46  cagaagagagatgtgaggacaaattaaagtcaataagaagaagaatggtaaaatacagta 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagaagagagatgtgaggacaaattaaagtcaataagaagaagaatggtaaaatacagta 305

                                                                       
Query: 106 cctatgacacagtgcaccttctaagacagactgcaatactcatactattttataaagtgc 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctatgacacagtgcaccttctaagacagactgcaatactcatactattttataaagtgc 365

                                                                       
Query: 166 catattacataaaaccaagagacatgtaccttaattcctgcaataaccattaaaacaaac 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 catattacataaaaccaagagacatgtaccttaattcctgcaataaccattaaaacaaac 425

                                                                       
Query: 226 aggcaggaaagagcagtgtaaaattaaaaacacacatagctcagcatgcatcgcggatgg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggcaggaaagagcagtgtaaaattaaaaacacacatagctcagcatgcatcgcggatgg 485

                                                                       
Query: 286 gtcccaggagcaaagcatggggccttaagctcttaaatacttatttcactttctagaaaa 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtcccaggagcaaagcatggggccttaagctcttaaatacttatttcactttctagaaaa 545

                                                                       
Query: 346 caatgaataatagcagattatcagcatatgtgaccatacaataaaaacaataagttaaat 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caatgaataatagcagattatcagcatatgtgaccatacaataaaaacaataagttaaat 605

                                                                       
Query: 406 tctcttttaagaaacaagccacacataaaattcattatagcatcttttttgaaaacagac 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctcttttaagaaacaagccacacataaaattcattatagcatcttttttgaaaacagac 665

                                                                       
Query: 466 ctttctctctggtaaatcactacccaaaaggtgcaaagtctcttaaaaaatttccttgtc 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctttctctctggtaaatcactacccaaaaggtgcaaagtctcttaaaaaatttccttgtc 725

                                                       
Query: 526 caccaggcatggcagaagtcttcaagtcttcttggcagacatct 569
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caccaggcatggcagaagtcttcaagtcttcttggcagacatct 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)