Query= MSMg01no062_b12.b1 MSMg01no062_b12.b1 CHROMAT_FILE:
MSMg01no062_b12.b1 PHD_FILE: MSMg01no062_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:19 2005
(664 letters)
>mm_chr12_7522725_7523788
Length = 1064
Score = 1172 bits (606), Expect = 0.0
Identities = 651/679 (95%), Gaps = 23/679 (3%)
Strand = Plus / Minus
Query: 3 aaggagntacataatatggtaactgaaaagctaagaccattactaacagtcctggaggcc 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaggagttacataatatggtaactgaaaagctaagaccattactaacagtcctggaggcc 680
Query: 63 aggggttagaaaggagtctcaccgggcttatacaagctgtcagaagagtgtattctccca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aggggttagaaaggagtctcaccgggcttatacaagctgtcagaagagtgtattctccca 620
Query: 123 cttagaagctctagggagagcccattttctttcttttcctgactgttataggaagcctct 182
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 619 cttagaagctctagggagagcccattttcgttcttttcctgactgttataggaagcctct 560
Query: 183 gtt-----------cttaaggatagccatgtctcctcaagcctttctcacagcacctctc 231
||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttctacctctgcccttaaggacagccatgtctcctcaagcctttctcacagcacctctc 500
Query: 232 tcttctatttcctccacatttaatgatgacttgtttttt------attttgcccatagtc 285
|||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 499 tcttctatttcctccacatttaatgatgac-tg-----tgaggacattttgcccatagtc 446
Query: 286 ataactcagtgtaatatacctatgttatataggtcatctaaataaactgtcatatctaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataactcagtgtaatatacctatgttatataggtcatctaaataaactgtcatatctaag 386
Query: 346 tgcttgccactgaaacatgaggaggtgaattctaatcccgagactccacaaaaatagaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcttgccactgaaacatgaggaggtgaattctaatcccgagactccacaaaaatagaag 326
Query: 406 gtccagcatggtggtgacaaaaccctgaaacctcggctttatgaggggtaggagataaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtccagcatggtggtgacaaaaccctgaaacctcggctttatgaggggtaggagataaag 266
Query: 466 atggccccttgaagctcatttgccagtcatttttattgaatggatgaatgtctggttcag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggccccttgaagctcatttgccagtcatttttattgaatggatgaatgtctggttcag 206
Query: 526 tgaaagaatctttcttgaaaacaaacaaacataaaacaaagcagacacctggcagaggtg 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agaaagaatctttcttgaaaacaaacaaacataaaacaaagcagacacctggcagaggtg 146
Query: 586 gccatgccttttatcccagcacttgggaggcagaggcaggaggatttctgagtttgaggc 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 145 gccatgccttttatcccagcacttgggaggcagaggcaggaggatttctgagttcgaggc 86
Query: 646 cagcctggtctacagagtg 664
|||||||||||||||||||
Sbjct: 85 cagcctggtctacagagtg 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_b12.g1 MSMg01no062_b12.g1 CHROMAT_FILE:
MSMg01no062_b12.g1 PHD_FILE: MSMg01no062_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:19 2005
(753 letters)
>mm_chr12_7413370_7414519
Length = 1150
Score = 1319 bits (682), Expect = 0.0
Identities = 735/754 (97%), Gaps = 4/754 (0%)
Strand = Plus / Plus
Query: 1 gtggggctggagagaaggctcactggctaacagcctagcctaggcctcctgcagaagacc 60
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 200 gtggggctagagagaaggctcactggctaacagcctagcctaggtctcttgcagaagacc 259
Query: 61 tgaattcaggtcccaaaagctatgtcaa-tgactcacaactgcctgtactccaggctcag 119
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 260 tgaattcaggtcccaaaagctatgtcaaatgactcacaactgcctgtactccaggcccag 319
Query: 120 agaaatcagatttctctagtctctgtgagcatgtaagcacatgcacacaagcatgcatgc 179
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 320 agaaatcagatttctctagtctctgtgagcatgtaagcacacacacacaagcatgcatgc 379
Query: 180 accaacacacacacatgcatacacatgcacatgtgcacatgcacaggtatagatgcacac 239
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 380 accaacacacacacatgcatacacatgcacatgtacacatacacaggtatagatgcacac 439
Query: 240 atgcacagaagcacacaggaatacttatgtacacactcaaactcctacacacacacacat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgcacagaagcacacaggaatacttatgtacacactcaaactcctacacacacacacat 499
Query: 300 atacacacatcaatttaaaaaataaaataaatcatttttaaaaacttgctttaaaaaatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atacacacatcaatttaaaaaataaaataaatcatttttaaaaacttgctttaaaaaatg 559
Query: 360 aaattcaaaattcactctccctgaactgatttgtagttactaagaaagccacattgcata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaattcaaaattcactctccctgaactgatttgtagttactaagaaagccacattgcata 619
Query: 420 ttttctattaacgaaaatatctgtaatgtctttcatgtttgtatcaggcctgagtctcaa 479
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 ttttctatttacgaaaatatctgtaatgtctttcatgtttgtatcagggctgagtctcaa 679
Query: 480 gactgtgtttttgtctatccaggacaaatgactccgcaatctatttagcatctgaagatg 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 gactgtgtttttgtctatccaggacaaatgactccgcaatctattta---tctgaagatg 736
Query: 540 tagatagccacagataatcactttcaaacattcctcaaatatgtaattatccaccaatag 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 737 tagatagccacagataatcactttcaaacattcctcaattatgtaattatccaccaatag 796
Query: 600 ctacgcccataggtaaatggcatttgcctttttagagaccagagtagagtgagaaagtaa 659
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 797 ctaggcccataggtaaatggcatttgcctttctagagaccagagtagagtgagaaagtaa 856
Query: 660 acactaacagatataagtggtataaagtacaggactgtaggagtcaaagaagggggtgaa 719
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 857 acattaacagatataagtggtataaagtacaggaatgtaggagtcaaagaagggggtgaa 916
Query: 720 ataagcaaatgacagatcatttgtttgaaaggag 753
||||||||||||||||||||||||||||||||||
Sbjct: 917 ataagcaaatgacagatcatttgtttgaaaggag 950
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1150
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1140
Effective search space: 847020
Effective search space used: 847020
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
